Wall clock time and date at job start Sat Apr 11 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47225 * 2 1 4 4 N 1.46500 * 109.47180 * 120.00518 * 2 1 3 5 5 C 1.35198 * 126.00265 * 275.00101 * 4 2 1 6 6 C 1.34571 * 107.61840 * 180.02562 * 5 4 2 7 7 C 1.40496 * 108.03646 * 359.90336 * 6 5 4 8 8 N 1.30123 * 108.22839 * 0.12497 * 7 6 5 9 9 C 1.50923 * 123.46490 * 180.28829 * 7 6 5 10 10 H 1.08996 * 109.75546 * 257.00038 * 9 7 6 11 11 N 1.46505 * 109.66549 * 136.36581 * 9 7 6 12 12 S 1.65598 * 120.00192 * 96.26247 * 11 9 7 13 13 O 1.42098 * 104.27364 * 181.07152 * 12 11 9 14 14 O 1.42092 * 104.27726 * 308.93259 * 12 11 9 15 15 C 1.81406 * 104.44597 * 65.00406 * 12 11 9 16 16 C 1.53001 * 109.46475 * 179.97438 * 15 12 11 17 17 C 1.50707 * 109.46493 * 179.97438 * 16 15 12 18 18 H 1.07996 * 119.99809 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99478 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00314 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99589 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47108 * 90.00187 * 21 19 17 23 23 H 1.48502 * 109.46933 * 210.00259 * 21 19 17 24 24 H 1.48504 * 109.47132 * 330.00220 * 21 19 17 25 25 C 1.53372 * 108.21958 * 16.70906 * 9 7 6 26 26 C 1.53025 * 109.69874 * 309.26711 * 25 9 7 27 27 C 1.50875 * 128.32856 * 179.90448 * 6 5 4 28 28 H 1.08995 * 109.47509 * 299.99869 * 1 2 3 29 29 H 1.09006 * 109.46918 * 59.99704 * 1 2 3 30 30 H 1.08999 * 109.47318 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47000 * 240.00584 * 2 1 3 32 32 H 1.09001 * 109.46655 * 60.00373 * 3 2 1 33 33 H 1.09000 * 109.47107 * 179.97438 * 3 2 1 34 34 H 1.08990 * 109.47398 * 300.00436 * 3 2 1 35 35 H 1.08000 * 126.19208 * 0.08943 * 5 4 2 36 36 H 0.97008 * 119.99331 * 276.26540 * 11 9 7 37 37 H 1.09003 * 109.46781 * 299.99620 * 15 12 11 38 38 H 1.08995 * 109.46866 * 59.99819 * 15 12 11 39 39 H 1.08996 * 109.47133 * 299.99233 * 16 15 12 40 40 H 1.09002 * 109.47265 * 60.00176 * 16 15 12 41 41 H 0.96999 * 119.99804 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.42674 * 189.21091 * 25 9 7 43 43 H 1.09002 * 109.42225 * 69.32328 * 25 9 7 44 44 H 1.09005 * 109.43072 * 191.82762 * 26 25 9 45 45 H 1.08993 * 109.43575 * 311.73189 * 26 25 9 46 46 H 1.09002 * 109.72223 * 76.84596 * 27 6 5 47 47 H 1.09000 * 109.72154 * 316.20006 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1934 -0.1378 2.4174 6 6 2.6545 -1.0997 3.2377 7 6 2.7653 -2.2877 2.4960 8 7 2.3864 -2.0424 1.2756 9 6 3.2464 -3.5928 3.0818 10 1 4.2773 -3.7750 2.7784 11 7 2.3921 -4.6875 2.6148 12 16 2.8511 -5.5969 1.3092 13 8 1.7884 -6.5244 1.1373 14 8 3.1573 -4.6392 0.3052 15 6 4.3564 -6.4480 1.8573 16 6 4.8837 -7.3315 0.7249 17 6 6.1346 -8.0381 1.1801 18 1 6.5151 -7.8738 2.1773 19 6 6.7926 -8.8951 0.3235 20 7 6.3289 -9.0955 -0.8907 21 14 8.3428 -9.7715 0.8879 22 1 7.9788 -11.0702 1.5093 23 1 9.2282 -10.0123 -0.2797 24 1 9.0536 -8.9287 1.8828 25 6 3.1673 -3.4905 4.6100 26 6 3.8613 -2.2095 5.0779 27 6 3.0089 -0.9915 4.7003 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6767 1.9562 0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8898 35 1 1.9975 0.8898 2.6862 36 1 1.5575 -4.8795 3.0704 37 1 5.1131 -5.7109 2.1261 38 1 4.1282 -7.0674 2.7247 39 1 4.1269 -8.0685 0.4566 40 1 5.1118 -6.7124 -0.1428 41 1 6.7921 -9.6982 -1.4934 42 1 3.6600 -4.3538 5.0572 43 1 2.1219 -3.4698 4.9183 44 1 3.9894 -2.2409 6.1600 45 1 4.8374 -2.1303 4.5994 46 1 2.0985 -0.9797 5.2995 47 1 3.5763 -0.0772 4.8746 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780409963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:30 Heat of formation + Delta-G solvation = -15.716128 kcal Electronic energy + Delta-G solvation = -28403.301468 eV Core-core repulsion = 24521.151573 eV Total energy + Delta-G solvation = -3882.149896 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.50892 -37.72995 -36.35848 -35.33451 -35.20995 -34.13422 -33.83068 -31.10101 -30.49546 -29.56833 -27.91769 -27.45820 -25.54431 -24.48223 -22.05455 -21.65198 -21.59177 -20.07055 -19.16549 -18.72377 -17.30845 -16.86627 -16.42293 -16.09918 -15.52803 -15.23995 -15.12528 -14.77492 -14.51438 -14.35832 -14.02028 -13.73064 -13.53613 -13.27272 -13.24366 -12.99584 -12.62179 -12.50377 -12.39446 -12.13965 -11.93266 -11.68279 -11.56779 -11.41787 -11.37536 -11.28335 -11.09881 -11.05045 -11.00645 -10.92144 -10.87450 -10.33517 -10.31958 -10.14139 -9.77667 -9.50431 -9.21278 -8.96980 -8.46078 -8.26280 -6.08042 -4.13359 0.92702 1.98734 2.45258 2.75008 3.28831 3.33136 3.34818 3.37761 4.19065 4.35224 4.43956 4.48782 4.59332 4.67053 4.75090 4.79451 4.79975 4.90727 5.02924 5.09832 5.12491 5.19544 5.27093 5.28736 5.33221 5.45132 5.52525 5.54471 5.63315 5.67020 5.75362 5.77079 5.77862 5.84042 5.87858 6.05348 6.07681 6.16593 6.25643 6.56320 6.69814 7.09958 7.18802 7.36650 7.43316 7.85037 7.90096 8.22790 8.90091 9.51018 11.03057 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.003018 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.257480 B = 9276.685130 C =10007.704614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.154 3.846 3 C -0.162 4.162 4 N -0.377 5.377 5 C 0.050 3.950 6 C -0.236 4.236 7 C 0.052 3.948 8 N -0.234 5.234 9 C 0.239 3.761 10 H 0.101 0.899 11 N -1.116 6.116 12 S 2.587 3.413 13 O -0.971 6.971 14 O -0.943 6.943 15 C -0.594 4.594 16 C 0.029 3.971 17 C -0.519 4.519 18 H 0.061 0.939 19 C 0.057 3.943 20 N -0.891 5.891 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.120 4.120 26 C -0.117 4.117 27 C -0.038 4.038 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.166 0.834 36 H 0.412 0.588 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.032 0.968 40 H 0.034 0.966 41 H 0.264 0.736 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.625 22.388 11.066 26.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.052 3.948 3 C -0.220 4.220 4 N -0.160 5.160 5 C -0.094 4.094 6 C -0.248 4.248 7 C -0.119 4.119 8 N -0.052 5.052 9 C 0.129 3.871 10 H 0.119 0.881 11 N -0.871 5.871 12 S 2.684 3.316 13 O -0.961 6.961 14 O -0.932 6.932 15 C -0.727 4.727 16 C -0.010 4.010 17 C -0.559 4.559 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.160 4.160 26 C -0.155 4.155 27 C -0.076 4.076 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.183 0.817 36 H 0.245 0.755 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.151 21.919 8.631 25.651 hybrid contribution 0.983 -0.246 1.595 1.890 sum -9.168 21.673 10.226 25.658 Atomic orbital electron populations 1.22230 0.93886 1.03404 1.02657 1.21218 0.94605 0.92542 0.86393 1.22174 1.02389 0.94142 1.03294 1.49050 1.51317 1.07539 1.08110 1.21817 1.02393 0.99289 0.85918 1.20008 1.13955 0.93096 0.97721 1.22709 1.01211 0.96494 0.91489 1.77554 1.17350 0.91660 1.18675 1.19089 0.93547 0.80712 0.93724 0.88119 1.55919 1.32728 1.45102 1.53323 1.05799 0.77364 0.74413 0.74042 1.93541 1.53342 1.64614 1.84649 1.93613 1.85620 1.59058 1.54944 1.30505 1.18020 1.12351 1.11825 1.18941 0.97731 0.93816 0.90521 1.21019 1.08975 1.26060 0.99805 0.92041 1.25072 0.97927 0.96651 0.94881 1.69959 1.40036 1.36594 1.06292 0.86480 0.82662 0.79930 0.78265 1.20488 1.21046 1.19747 1.21874 1.02360 0.98876 0.92858 1.21553 0.99318 0.93632 1.00978 1.19966 0.99150 0.98165 0.90330 0.92167 0.90632 0.91502 0.87746 0.91779 0.91447 0.90128 0.81697 0.75507 0.86511 0.86208 0.94934 0.94822 0.92578 0.90036 0.90774 0.91053 0.91251 0.91549 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.52 37.16 0.35 -1.01 16 2 C 0.15 1.52 3.93 -67.93 -0.27 1.26 16 3 C -0.16 -1.06 8.84 37.16 0.33 -0.74 16 4 N -0.38 -4.89 3.54 -54.99 -0.19 -5.08 16 5 C 0.05 0.54 10.55 -17.37 -0.18 0.35 16 6 C -0.24 -2.74 5.89 -104.98 -0.62 -3.36 16 7 C 0.05 0.76 6.70 -82.36 -0.55 0.21 16 8 N -0.23 -3.96 11.63 33.74 0.39 -3.57 16 9 C 0.24 3.13 2.92 -68.78 -0.20 2.93 16 10 H 0.10 1.31 7.18 -51.93 -0.37 0.93 16 11 N -1.12 -16.06 5.36 -5.62 -0.03 -16.09 16 12 S 2.59 49.62 5.38 -107.50 -0.58 49.04 16 13 O -0.97 -21.49 18.08 -57.54 -1.04 -22.53 16 14 O -0.94 -20.97 16.89 -57.54 -0.97 -21.94 16 15 C -0.59 -11.75 5.90 37.16 0.22 -11.53 16 16 C 0.03 0.76 4.98 -27.88 -0.14 0.62 16 17 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 18 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 21 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 C -0.12 -1.12 5.41 -26.53 -0.14 -1.26 16 26 C -0.12 -0.94 5.87 -26.52 -0.16 -1.09 16 27 C -0.04 -0.31 6.28 -27.60 -0.17 -0.49 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 0.34 7.16 -51.93 -0.37 -0.03 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.17 1.17 7.27 -52.49 -0.38 0.79 16 36 H 0.41 5.05 8.81 -34.48 -0.30 4.75 16 37 H 0.12 2.06 7.46 -51.92 -0.39 1.67 16 38 H 0.12 2.11 8.14 -51.93 -0.42 1.69 16 39 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 392.35 15.07 5.91 5.91 Total: -1.00 -38.38 392.35 -10.43 -48.81 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -7.70 Total: 2.70 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: -1.94 Total: -27.48 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.90 Total: -50.94 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -2.01 Total: -44.47 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 49.62 SS G_CDS: -0.58 Total: 49.04 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.38 -10.43 -48.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780409963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.094 kcal (2) G-P(sol) polarization free energy of solvation -38.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds