Wall clock time and date at job start Sat Apr 11 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47225 * 2 1 4 4 N 1.46500 * 109.47180 * 120.00518 * 2 1 3 5 5 C 1.35198 * 126.00265 * 275.00101 * 4 2 1 6 6 C 1.34571 * 107.61840 * 180.02562 * 5 4 2 7 7 C 1.40496 * 108.03646 * 359.90336 * 6 5 4 8 8 N 1.30123 * 108.22839 * 0.12497 * 7 6 5 9 9 C 1.50923 * 123.46490 * 180.28829 * 7 6 5 10 10 H 1.08996 * 109.75546 * 257.00038 * 9 7 6 11 11 N 1.46505 * 109.66549 * 136.36581 * 9 7 6 12 12 S 1.65598 * 120.00192 * 96.26247 * 11 9 7 13 13 O 1.42098 * 104.27364 * 181.07152 * 12 11 9 14 14 O 1.42092 * 104.27726 * 308.93259 * 12 11 9 15 15 C 1.81406 * 104.44597 * 65.00406 * 12 11 9 16 16 C 1.53001 * 109.46475 * 179.97438 * 15 12 11 17 17 C 1.50707 * 109.46493 * 179.97438 * 16 15 12 18 18 H 1.07996 * 119.99809 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99478 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00314 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99589 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47108 * 90.00187 * 21 19 17 23 23 H 1.48502 * 109.46933 * 210.00259 * 21 19 17 24 24 H 1.48504 * 109.47132 * 330.00220 * 21 19 17 25 25 C 1.53372 * 108.21958 * 16.70906 * 9 7 6 26 26 C 1.53025 * 109.69874 * 309.26711 * 25 9 7 27 27 C 1.50875 * 128.32856 * 179.90448 * 6 5 4 28 28 H 1.08995 * 109.47509 * 299.99869 * 1 2 3 29 29 H 1.09006 * 109.46918 * 59.99704 * 1 2 3 30 30 H 1.08999 * 109.47318 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47000 * 240.00584 * 2 1 3 32 32 H 1.09001 * 109.46655 * 60.00373 * 3 2 1 33 33 H 1.09000 * 109.47107 * 179.97438 * 3 2 1 34 34 H 1.08990 * 109.47398 * 300.00436 * 3 2 1 35 35 H 1.08000 * 126.19208 * 0.08943 * 5 4 2 36 36 H 0.97008 * 119.99331 * 276.26540 * 11 9 7 37 37 H 1.09003 * 109.46781 * 299.99620 * 15 12 11 38 38 H 1.08995 * 109.46866 * 59.99819 * 15 12 11 39 39 H 1.08996 * 109.47133 * 299.99233 * 16 15 12 40 40 H 1.09002 * 109.47265 * 60.00176 * 16 15 12 41 41 H 0.96999 * 119.99804 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.42674 * 189.21091 * 25 9 7 43 43 H 1.09002 * 109.42225 * 69.32328 * 25 9 7 44 44 H 1.09005 * 109.43072 * 191.82762 * 26 25 9 45 45 H 1.08993 * 109.43575 * 311.73189 * 26 25 9 46 46 H 1.09002 * 109.72223 * 76.84596 * 27 6 5 47 47 H 1.09000 * 109.72154 * 316.20006 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1934 -0.1378 2.4174 6 6 2.6545 -1.0997 3.2377 7 6 2.7653 -2.2877 2.4960 8 7 2.3864 -2.0424 1.2756 9 6 3.2464 -3.5928 3.0818 10 1 4.2773 -3.7750 2.7784 11 7 2.3921 -4.6875 2.6148 12 16 2.8511 -5.5969 1.3092 13 8 1.7884 -6.5244 1.1373 14 8 3.1573 -4.6392 0.3052 15 6 4.3564 -6.4480 1.8573 16 6 4.8837 -7.3315 0.7249 17 6 6.1346 -8.0381 1.1801 18 1 6.5151 -7.8738 2.1773 19 6 6.7926 -8.8951 0.3235 20 7 6.3289 -9.0955 -0.8907 21 14 8.3428 -9.7715 0.8879 22 1 7.9788 -11.0702 1.5093 23 1 9.2282 -10.0123 -0.2797 24 1 9.0536 -8.9287 1.8828 25 6 3.1673 -3.4905 4.6100 26 6 3.8613 -2.2095 5.0779 27 6 3.0089 -0.9915 4.7003 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6767 1.9562 0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8898 35 1 1.9975 0.8898 2.6862 36 1 1.5575 -4.8795 3.0704 37 1 5.1131 -5.7109 2.1261 38 1 4.1282 -7.0674 2.7247 39 1 4.1269 -8.0685 0.4566 40 1 5.1118 -6.7124 -0.1428 41 1 6.7921 -9.6982 -1.4934 42 1 3.6600 -4.3538 5.0572 43 1 2.1219 -3.4698 4.9183 44 1 3.9894 -2.2409 6.1600 45 1 4.8374 -2.1303 4.5994 46 1 2.0985 -0.9797 5.2995 47 1 3.5763 -0.0772 4.8746 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780409963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:29 Heat of formation + Delta-G solvation = -44.089927 kcal Electronic energy + Delta-G solvation = -28404.531848 eV Core-core repulsion = 24521.151573 eV Total energy + Delta-G solvation = -3883.380276 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.40389 -38.61840 -38.02551 -36.91876 -36.13894 -35.89916 -35.03666 -33.13421 -31.47360 -30.36099 -28.71830 -28.13726 -27.60156 -25.29086 -23.63339 -22.82390 -22.46969 -20.90072 -20.30313 -19.97768 -19.07051 -18.19723 -17.74216 -17.26418 -16.99919 -16.52826 -16.34972 -16.16579 -15.93432 -15.27140 -15.02823 -14.74251 -14.49489 -14.47536 -14.29071 -14.09240 -13.73586 -13.72301 -13.30762 -13.16194 -13.10241 -13.02246 -12.93389 -12.88351 -12.82655 -12.75633 -12.37933 -12.26953 -12.18229 -12.09215 -11.97490 -11.74489 -11.69590 -11.63191 -11.16287 -11.04956 -10.65097 -10.51306 -10.19004 -9.10994 -8.25870 -6.40436 -0.65990 1.09370 1.40773 1.43374 1.54474 1.63990 1.71038 2.05638 2.38406 2.84911 3.07397 3.33494 3.42066 3.72899 3.80439 3.93738 3.98325 3.99238 4.04824 4.09369 4.12866 4.26351 4.35897 4.44712 4.59069 4.61912 4.73597 4.74101 4.78119 4.79693 4.89822 4.96815 5.00843 5.11612 5.15835 5.19111 5.25657 5.26875 5.31794 5.37960 5.42244 5.57797 5.68083 5.81654 6.05240 6.10265 6.32667 6.73378 6.95342 7.29800 8.86722 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.003018 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.257480 B = 9276.685130 C =10007.704614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.142 3.858 3 C -0.151 4.151 4 N -0.383 5.383 5 C 0.055 3.945 6 C -0.245 4.245 7 C 0.033 3.967 8 N -0.305 5.305 9 C 0.227 3.773 10 H 0.096 0.904 11 N -1.097 6.097 12 S 2.609 3.391 13 O -1.006 7.006 14 O -0.978 6.978 15 C -0.587 4.587 16 C 0.022 3.978 17 C -0.538 4.538 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.936 5.936 21 Si 0.977 3.023 22 H -0.270 1.270 23 H -0.284 1.284 24 H -0.255 1.255 25 C -0.114 4.114 26 C -0.115 4.115 27 C -0.034 4.034 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.101 0.899 35 H 0.206 0.794 36 H 0.423 0.577 37 H 0.141 0.859 38 H 0.147 0.853 39 H 0.004 0.996 40 H 0.003 0.997 41 H 0.267 0.733 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.061 0.939 46 H 0.080 0.920 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.002 24.478 14.494 29.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.041 3.959 3 C -0.209 4.209 4 N -0.166 5.166 5 C -0.089 4.089 6 C -0.257 4.257 7 C -0.137 4.137 8 N -0.125 5.125 9 C 0.117 3.883 10 H 0.114 0.886 11 N -0.856 5.856 12 S 2.706 3.294 13 O -0.996 6.996 14 O -0.968 6.968 15 C -0.719 4.719 16 C -0.017 4.017 17 C -0.577 4.577 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.576 5.576 21 Si 0.800 3.200 22 H -0.195 1.195 23 H -0.209 1.209 24 H -0.179 1.179 25 C -0.154 4.154 26 C -0.153 4.153 27 C -0.072 4.072 28 H 0.092 0.908 29 H 0.118 0.882 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.222 0.778 36 H 0.260 0.740 37 H 0.159 0.841 38 H 0.165 0.835 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.076 0.924 42 H 0.115 0.885 43 H 0.101 0.899 44 H 0.117 0.883 45 H 0.080 0.920 46 H 0.099 0.901 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.540 24.011 12.074 28.518 hybrid contribution 0.723 -0.796 0.490 1.182 sum -8.817 23.214 12.564 27.830 Atomic orbital electron populations 1.22173 0.92729 1.01898 1.04512 1.21498 0.95586 0.93980 0.84833 1.22131 1.01604 0.91797 1.05331 1.49296 1.51126 1.06603 1.09605 1.22487 1.00859 1.00803 0.84764 1.20475 1.13773 0.91963 0.99457 1.23063 1.01200 0.97942 0.91514 1.77448 1.20008 0.94437 1.20599 1.19520 0.92753 0.79583 0.96400 0.88639 1.55367 1.33424 1.44714 1.52114 1.04827 0.76511 0.73770 0.74326 1.93483 1.54481 1.65971 1.85650 1.93572 1.85965 1.59955 1.57277 1.30347 1.18926 1.12344 1.10255 1.18800 0.97174 0.93800 0.91916 1.21532 1.09477 1.26087 1.00621 0.90287 1.26175 1.01856 0.97591 0.94828 1.70119 1.41970 1.37628 1.07869 0.85274 0.77865 0.78834 0.78048 1.19481 1.20925 1.17875 1.21916 1.03455 1.00484 0.89510 1.21591 0.98623 0.92653 1.02478 1.20067 1.00047 0.99062 0.88037 0.90753 0.88247 0.94618 0.90426 0.89720 0.92548 0.88056 0.77771 0.74049 0.84101 0.83535 0.97808 0.97839 0.92419 0.88479 0.89881 0.88343 0.91996 0.90136 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.52 71.98 0.69 -1.84 16 2 C 0.14 2.82 3.93 44.99 0.18 3.00 16 3 C -0.15 -1.71 8.84 71.98 0.64 -1.07 16 4 N -0.38 -9.94 3.54 -327.89 -1.16 -11.10 16 5 C 0.05 1.08 10.55 83.33 0.88 1.95 16 6 C -0.24 -5.26 5.89 -20.10 -0.12 -5.38 16 7 C 0.03 0.96 6.70 43.43 0.29 1.25 16 8 N -0.30 -10.74 11.63 -47.15 -0.55 -11.29 16 9 C 0.23 5.78 2.92 44.44 0.13 5.91 16 10 H 0.10 2.47 7.18 -2.39 -0.02 2.45 16 11 N -1.10 -31.57 5.36 -171.69 -0.92 -32.49 16 12 S 2.61 103.91 5.38 -56.49 -0.30 103.61 16 13 O -1.01 -46.35 18.08 -127.65 -2.31 -48.65 16 14 O -0.98 -46.18 16.89 -127.65 -2.16 -48.33 16 15 C -0.59 -23.39 5.90 71.98 0.43 -22.96 16 16 C 0.02 1.20 4.98 29.85 0.15 1.35 16 17 C -0.54 -30.52 9.11 25.60 0.23 -30.28 16 18 H 0.08 4.08 7.74 -2.91 -0.02 4.06 16 19 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 20 N -0.94 -58.45 13.29 21.45 0.28 -58.16 16 21 Si 0.98 43.92 29.54 68.60 2.03 45.94 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 25 C -0.11 -1.83 5.41 30.73 0.17 -1.66 16 26 C -0.12 -1.47 5.87 30.73 0.18 -1.29 16 27 C -0.03 -0.45 6.28 30.03 0.19 -0.26 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.08 0.62 7.16 -2.39 -0.02 0.60 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.21 2.12 7.27 -2.91 -0.02 2.10 16 36 H 0.42 10.22 8.81 -96.73 -0.85 9.37 16 37 H 0.14 4.89 7.46 -2.39 -0.02 4.87 16 38 H 0.15 5.01 8.14 -2.39 -0.02 4.99 16 39 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.10 1.25 8.14 -2.39 -0.02 1.24 16 43 H 0.08 1.19 8.10 -2.39 -0.02 1.17 16 44 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 46 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -88.48 392.35 -0.49 -88.97 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.11 Total: 22.70 kcal Atomic # 6 Polarization: -55.67 SS G_CDS: 4.48 Total: -51.19 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -2.34 Total: -113.05 kcal Atomic # 8 Polarization: -92.53 SS G_CDS: -4.46 Total: -96.99 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 103.91 SS G_CDS: -0.30 Total: 103.61 kcal Total: -88.48 -0.49 -88.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780409963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.879 kcal (2) G-P(sol) polarization free energy of solvation -88.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds