Wall clock time and date at job start Sat Apr 11 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47094 * 2 1 4 4 C 1.50700 * 109.47017 * 119.99855 * 2 1 3 5 5 O 1.21318 * 120.00296 * 0.02562 * 4 2 1 6 6 N 1.34783 * 119.99785 * 179.97438 * 4 2 1 7 7 N 1.40093 * 119.99962 * 179.97438 * 6 4 2 8 8 C 1.29786 * 120.00222 * 180.02562 * 7 6 4 9 9 C 1.47405 * 120.00144 * 180.02562 * 8 7 6 10 10 C 1.36761 * 126.68946 * 185.28720 * 9 8 7 11 11 N 1.34625 * 108.05305 * 180.26137 * 10 9 8 12 12 C 1.46501 * 125.25020 * 179.73645 * 11 10 9 13 13 C 1.50701 * 109.47048 * 125.00623 * 12 11 10 14 14 H 1.07999 * 119.99950 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99994 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99525 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00070 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47210 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46906 * 119.99862 * 17 15 13 20 20 H 1.48502 * 109.47212 * 239.99801 * 17 15 13 21 21 N 1.39830 * 109.50220 * 359.75997 * 11 10 9 22 22 C 1.31548 * 108.81551 * 359.97438 * 21 11 10 23 23 C 1.48222 * 126.49271 * 179.97438 * 22 21 11 24 24 C 1.39836 * 120.90486 * 224.78139 * 23 22 21 25 25 C 1.37950 * 119.01176 * 179.97438 * 24 23 22 26 26 N 1.31936 * 120.88461 * 0.02735 * 25 24 23 27 27 C 1.31947 * 122.02466 * 359.97438 * 26 25 24 28 28 C 1.37942 * 120.88137 * 359.97438 * 27 26 25 29 29 H 1.08994 * 109.47621 * 299.99935 * 1 2 3 30 30 H 1.09003 * 109.47004 * 60.00246 * 1 2 3 31 31 H 1.09007 * 109.47161 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47471 * 240.00180 * 2 1 3 33 33 H 1.08993 * 109.46951 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46575 * 300.00091 * 3 2 1 35 35 H 1.09004 * 109.46814 * 59.99778 * 3 2 1 36 36 H 0.96997 * 120.00124 * 0.02562 * 6 4 2 37 37 H 1.07998 * 120.00122 * 0.02562 * 8 7 6 38 38 H 1.08000 * 125.97151 * 0.05869 * 10 9 8 39 39 H 1.08998 * 109.47154 * 245.00123 * 12 11 10 40 40 H 1.08999 * 109.47191 * 4.99964 * 12 11 10 41 41 H 0.97010 * 119.99401 * 180.02562 * 16 15 13 42 42 H 1.08003 * 120.50260 * 359.95759 * 24 23 22 43 43 H 1.08003 * 119.55994 * 179.97438 * 25 24 23 44 44 H 1.08004 * 119.55671 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.49111 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.2440 -1.1718 2.0289 6 7 3.3574 -0.8340 1.4435 7 7 3.8244 -1.4939 2.5876 8 6 5.1004 -1.6125 2.7930 9 6 5.5918 -2.3073 3.9966 10 6 6.8937 -2.4230 4.3991 11 7 6.9155 -3.1350 5.5415 12 6 8.1213 -3.4870 6.2954 13 6 7.9795 -3.0137 7.7192 14 1 7.0812 -2.5016 8.0311 15 6 8.9969 -3.2337 8.6234 16 7 10.0909 -3.8569 8.2433 17 14 8.8215 -2.6465 10.3879 18 1 7.5064 -1.9784 10.5589 19 1 8.9098 -3.8091 11.3076 20 1 9.9090 -1.6847 10.7001 21 7 5.6099 -3.4871 5.8971 22 6 4.7804 -3.0060 4.9965 23 6 3.3052 -3.1496 4.9908 24 6 2.6207 -3.4844 3.8184 25 6 1.2473 -3.6084 3.8577 26 7 0.5817 -3.4152 4.9803 27 6 1.1889 -3.0980 6.1080 28 6 2.5600 -2.9549 6.1579 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.9877 -0.4653 0.8050 37 1 5.8023 -1.2020 2.0822 38 1 7.7541 -2.0171 3.8879 39 1 8.2542 -4.5687 6.2837 40 1 8.9880 -3.0094 5.8384 41 1 10.8066 -4.0119 8.8796 42 1 3.1590 -3.6433 2.8956 43 1 0.7097 -3.8663 2.9572 44 1 0.6046 -2.9485 7.0039 45 1 3.0504 -2.6947 7.0843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788420652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:34 Heat of formation + Delta-G solvation = 108.541871 kcal Electronic energy + Delta-G solvation = -28727.000915 eV Core-core repulsion = 24747.088050 eV Total energy + Delta-G solvation = -3979.912865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.56233 -39.82523 -39.30168 -36.53830 -34.70892 -34.11772 -32.85430 -32.28778 -30.82034 -30.67113 -29.47769 -27.47172 -27.06709 -24.36666 -24.15894 -22.97006 -22.76816 -21.61466 -20.38158 -19.89654 -19.35714 -17.57541 -16.97790 -16.73870 -16.40986 -15.71120 -15.60485 -15.48607 -15.18157 -14.63459 -14.50815 -14.32202 -14.12261 -13.76554 -13.38261 -13.27822 -13.18710 -12.97895 -12.65395 -12.47555 -12.39845 -12.23907 -12.13904 -11.83477 -11.52675 -11.40251 -11.24850 -11.05932 -10.94357 -10.49684 -10.35621 -10.24179 -9.87218 -9.73667 -9.47705 -9.30997 -9.08639 -8.74404 -8.61012 -8.45820 -7.49750 -6.36372 -4.42122 1.30901 1.63198 1.69034 2.49798 2.58218 2.81870 3.16431 3.20659 3.24998 3.33463 3.48793 4.22367 4.28181 4.33562 4.50721 4.59250 4.60516 4.86077 4.87613 4.96325 5.00614 5.01600 5.24280 5.29124 5.33496 5.37852 5.51112 5.54044 5.57522 5.60330 5.77513 5.80025 5.85902 5.98350 6.00503 6.16466 6.22750 6.35931 6.61406 6.76189 6.85062 7.03596 7.11936 7.12608 7.50393 7.59513 7.70376 7.73038 8.28367 8.41059 8.46244 8.65629 9.24733 10.72461 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014812 B = 0.002732 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.944642 B =10245.707951 C =11387.579992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.108 4.108 3 C -0.146 4.146 4 C 0.527 3.473 5 O -0.496 6.496 6 N -0.589 5.589 7 N -0.252 5.252 8 C 0.169 3.831 9 C -0.231 4.231 10 C 0.098 3.902 11 N -0.316 5.316 12 C 0.252 3.748 13 C -0.532 4.532 14 H 0.071 0.929 15 C 0.064 3.936 16 N -0.893 5.893 17 Si 0.908 3.092 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.281 1.281 21 N -0.251 5.251 22 C 0.112 3.888 23 C 0.046 3.954 24 C -0.100 4.100 25 C 0.112 3.888 26 N -0.488 5.488 27 C 0.086 3.914 28 C -0.151 4.151 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.377 0.623 37 H 0.113 0.887 38 H 0.179 0.821 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.268 0.732 42 H 0.126 0.874 43 H 0.145 0.855 44 H 0.150 0.850 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.967 7.607 -18.413 22.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.131 4.131 3 C -0.203 4.203 4 C 0.313 3.687 5 O -0.367 6.367 6 N -0.331 5.331 7 N -0.057 5.057 8 C -0.041 4.041 9 C -0.247 4.247 10 C -0.056 4.056 11 N -0.094 5.094 12 C 0.135 3.865 13 C -0.571 4.571 14 H 0.089 0.911 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.735 3.265 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.207 1.207 21 N -0.072 5.072 22 C -0.057 4.057 23 C 0.036 3.964 24 C -0.122 4.122 25 C -0.045 4.045 26 N -0.198 5.198 27 C -0.070 4.070 28 C -0.173 4.173 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.214 0.786 37 H 0.130 0.870 38 H 0.196 0.804 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.144 0.856 43 H 0.162 0.838 44 H 0.167 0.833 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.966 6.268 -16.349 21.788 hybrid contribution 2.420 1.448 -0.622 2.888 sum -10.546 7.717 -16.971 21.419 Atomic orbital electron populations 1.21617 0.92010 1.03136 1.02237 1.21309 0.98646 0.97080 0.96090 1.21816 1.01040 0.94304 1.03185 1.20578 0.80485 0.79896 0.87735 1.90764 1.54290 1.45810 1.45802 1.47085 1.07849 1.56792 1.21388 1.75303 1.15625 1.11841 1.02965 1.23507 0.91328 0.94555 0.94721 1.19015 0.91452 1.14737 0.99468 1.22515 0.97521 0.95807 0.89804 1.49351 1.06898 1.36381 1.16735 1.19914 0.76546 0.98201 0.91825 1.21240 1.03738 1.38870 0.93207 0.91113 1.24934 0.94699 0.94651 0.99624 1.69919 1.06526 1.40798 1.35871 0.86262 0.78408 0.78609 0.83229 1.19431 1.20562 1.20703 1.77585 0.87888 1.21233 1.20519 1.21740 0.92357 0.98641 0.92927 1.17915 0.88350 0.96520 0.93649 1.21798 0.95213 0.97840 0.97311 1.22294 0.90988 0.95769 0.95421 1.67529 1.41228 1.11814 0.99218 1.22470 0.91689 0.96806 0.96045 1.22159 0.95226 1.01295 0.98577 0.91728 0.91980 0.91687 0.88492 0.92336 0.91213 0.91848 0.78596 0.86984 0.80422 0.93165 0.92273 0.92228 0.85647 0.83771 0.83291 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 8.48 37.16 0.32 -0.71 16 2 C -0.11 -0.79 3.26 -91.77 -0.30 -1.09 16 3 C -0.15 -0.84 9.09 37.16 0.34 -0.50 16 4 C 0.53 6.11 7.27 -10.98 -0.08 6.03 16 5 O -0.50 -7.86 15.44 5.52 0.09 -7.78 16 6 N -0.59 -6.36 6.16 31.23 0.19 -6.17 16 7 N -0.25 -3.54 7.09 32.15 0.23 -3.31 16 8 C 0.17 2.16 10.93 -14.69 -0.16 2.00 16 9 C -0.23 -3.74 6.24 -103.37 -0.64 -4.38 16 10 C 0.10 1.58 11.34 -16.86 -0.19 1.39 16 11 N -0.32 -6.54 3.64 -62.24 -0.23 -6.77 16 12 C 0.25 5.85 6.22 -5.19 -0.03 5.81 16 13 C -0.53 -13.97 9.21 -34.44 -0.32 -14.28 16 14 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -24.15 13.29 55.43 0.74 -23.42 16 17 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 N -0.25 -5.47 12.34 34.56 0.43 -5.05 16 22 C 0.11 2.13 6.92 -80.56 -0.56 1.57 16 23 C 0.05 0.83 5.50 -104.60 -0.58 0.25 16 24 C -0.10 -1.67 7.67 -39.09 -0.30 -1.97 16 25 C 0.11 1.83 10.30 -17.61 -0.18 1.65 16 26 N -0.49 -8.39 10.35 -13.35 -0.14 -8.52 16 27 C 0.09 1.39 11.17 -17.61 -0.20 1.20 16 28 C -0.15 -2.63 9.89 -39.09 -0.39 -3.01 16 29 H 0.06 0.60 8.10 -51.93 -0.42 0.17 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.56 8.10 -51.92 -0.42 0.14 16 32 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.28 7.56 -51.93 -0.39 -0.12 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.38 2.68 8.07 -182.61 -1.47 1.20 16 37 H 0.11 0.97 8.02 -52.49 -0.42 0.55 16 38 H 0.18 2.08 8.06 -52.49 -0.42 1.66 16 39 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.06 1.32 8.05 -51.93 -0.42 0.90 16 41 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.13 2.01 6.97 -52.48 -0.37 1.64 16 43 H 0.14 2.11 8.06 -52.48 -0.42 1.68 16 44 H 0.15 1.95 8.06 -52.48 -0.42 1.52 16 45 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 392.05 15.07 5.91 5.91 Total: -1.00 -33.09 392.05 -8.44 -41.53 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.26 Total: 2.35 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -3.37 Total: -4.43 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 1.22 Total: -53.24 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.09 Total: -7.78 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.09 -8.44 -41.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788420652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.074 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds