Wall clock time and date at job start Sat Apr 11 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47364 * 2 1 4 4 C 1.53001 * 109.47065 * 120.00281 * 2 1 3 5 5 N 1.46501 * 109.47161 * 175.00155 * 4 2 1 6 6 C 1.46503 * 119.99752 * 274.99541 * 5 4 2 7 7 C 1.50696 * 109.47081 * 274.99977 * 6 5 4 8 8 H 1.08003 * 120.00249 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00080 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99792 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00217 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46778 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47309 * 119.99874 * 11 9 7 14 14 H 1.48501 * 109.46713 * 239.99966 * 11 9 7 15 15 S 1.65603 * 120.00386 * 94.99447 * 5 4 2 16 16 O 1.42105 * 106.40061 * 336.46214 * 15 5 4 17 17 O 1.42090 * 106.40476 * 203.53936 * 15 5 4 18 18 C 1.76202 * 107.21365 * 90.00020 * 15 5 4 19 19 C 1.38883 * 120.33799 * 90.00727 * 18 15 5 20 20 C 1.38292 * 118.50826 * 180.02562 * 19 18 15 21 21 C 1.39135 * 119.09875 * 359.97438 * 20 19 18 22 22 N 1.38995 * 119.70959 * 180.02562 * 21 20 19 23 23 C 1.46504 * 120.00018 * 4.97521 * 22 21 20 24 24 C 1.46507 * 120.00507 * 184.98063 * 22 21 20 25 25 N 1.32404 * 120.58865 * 359.97438 * 21 20 19 26 26 C 1.31974 * 121.61606 * 0.02562 * 25 21 20 27 27 H 1.09002 * 109.47424 * 300.00194 * 1 2 3 28 28 H 1.09004 * 109.47308 * 60.00176 * 1 2 3 29 29 H 1.09005 * 109.47629 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47424 * 239.99806 * 2 1 3 31 31 H 1.08998 * 109.47092 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46745 * 299.99779 * 3 2 1 33 33 H 1.08998 * 109.46913 * 60.00069 * 3 2 1 34 34 H 1.08997 * 109.47105 * 54.99797 * 4 2 1 35 35 H 1.09001 * 109.46880 * 294.99311 * 4 2 1 36 36 H 1.09003 * 109.47317 * 35.00177 * 6 5 4 37 37 H 1.09002 * 109.46928 * 154.99956 * 6 5 4 38 38 H 0.97004 * 120.00425 * 180.02562 * 10 9 7 39 39 H 1.07997 * 120.74223 * 359.97438 * 19 18 15 40 40 H 1.07998 * 120.44995 * 180.02562 * 20 19 18 41 41 H 1.09000 * 109.46764 * 90.00013 * 23 22 21 42 42 H 1.09005 * 109.47418 * 210.00469 * 23 22 21 43 43 H 1.09005 * 109.47036 * 330.00362 * 23 22 21 44 44 H 1.09006 * 109.46532 * 359.97438 * 24 22 21 45 45 H 1.08996 * 109.47165 * 119.99486 * 24 22 21 46 46 H 1.08995 * 109.47267 * 239.99912 * 24 22 21 47 47 H 1.08003 * 119.56641 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.1260 -1.9353 0.4662 7 6 4.2202 -3.1368 1.3709 8 1 3.8504 -3.0802 2.3841 9 6 4.7786 -4.3083 0.9053 10 7 5.2294 -4.3770 -0.3282 11 14 4.8948 -5.7979 2.0265 12 1 4.3217 -5.4633 3.3549 13 1 4.1367 -6.9268 1.4300 14 1 6.3189 -6.1873 2.1861 15 16 4.4428 0.3082 1.9431 16 8 3.6470 1.4801 2.0561 17 8 5.7018 0.2842 1.2849 18 6 4.7296 -0.2590 3.5865 19 6 5.8293 -1.0582 3.8708 20 6 6.0176 -1.4825 5.1735 21 6 5.1046 -1.0960 6.1497 22 7 5.2820 -1.5147 7.4632 23 6 6.4825 -2.2669 7.8365 24 6 4.2685 -1.2040 8.4744 25 7 4.0688 -0.3322 5.8389 26 6 3.8643 0.0873 4.6044 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6053 -1.7198 1.2951 35 1 1.7516 -0.1583 2.1369 36 1 3.5237 -2.1847 -0.4075 37 1 5.1259 -1.6419 0.1464 38 1 5.6219 -5.2013 -0.6560 39 1 6.5212 -1.3426 3.0920 40 1 6.8624 -2.1046 5.4298 41 1 7.2649 -1.5731 8.1442 42 1 6.2480 -2.9395 8.6616 43 1 6.8279 -2.8478 6.9812 44 1 3.4553 -0.6432 8.0134 45 1 3.8784 -2.1310 8.8947 46 1 4.7177 -0.6063 9.2674 47 1 3.0081 0.7090 4.3878 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804990872.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:35 Heat of formation + Delta-G solvation = -28.329244 kcal Electronic energy + Delta-G solvation = -29310.567172 eV Core-core repulsion = 25427.870331 eV Total energy + Delta-G solvation = -3882.696841 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.14221 -37.16278 -36.60180 -36.46638 -35.16772 -33.72905 -32.37793 -32.11095 -30.51333 -28.39311 -27.43301 -26.72716 -25.50055 -24.94082 -23.22787 -22.43164 -21.66855 -19.72136 -18.46276 -17.66828 -17.04464 -16.70778 -16.69730 -16.24025 -15.44922 -15.33150 -14.71907 -14.54710 -14.34947 -14.25046 -13.99891 -13.55807 -13.45303 -13.08684 -12.77197 -12.67369 -12.54520 -12.30439 -12.29276 -12.12234 -12.06086 -11.95484 -11.52667 -11.44375 -11.25745 -11.14448 -10.93818 -10.78821 -10.57057 -10.43175 -10.41653 -10.27030 -10.19572 -9.92602 -9.71706 -9.58551 -9.31859 -8.51100 -8.01525 -7.74198 -6.12201 -4.18085 1.01929 1.29049 1.55542 2.78139 3.20840 3.29653 3.32807 3.63976 3.97267 4.35314 4.43185 4.50349 4.84989 4.87447 5.01666 5.12171 5.21752 5.26867 5.28871 5.32110 5.34762 5.37456 5.42932 5.45186 5.56182 5.73740 5.75402 5.87812 6.00120 6.04617 6.11870 6.21622 6.24468 6.25664 6.29585 6.47414 6.61545 6.64573 6.77104 6.78996 6.90863 7.24244 7.35954 7.44652 7.65991 7.85669 8.07799 8.15234 8.87652 9.47953 10.95663 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008522 B = 0.005550 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3284.892332 B = 5043.604396 C = 7026.425423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C -0.139 4.139 4 C 0.138 3.862 5 N -0.980 5.980 6 C 0.244 3.756 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.066 3.934 10 N -0.888 5.888 11 Si 0.888 3.112 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.283 1.283 15 S 2.698 3.302 16 O -0.973 6.973 17 O -0.963 6.963 18 C -0.775 4.775 19 C 0.082 3.918 20 C -0.260 4.260 21 C 0.435 3.565 22 N -0.615 5.615 23 C 0.091 3.909 24 C 0.091 3.909 25 N -0.559 5.559 26 C 0.244 3.756 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.052 0.948 38 H 0.264 0.736 39 H 0.152 0.848 40 H 0.138 0.862 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.960 6.121 11.793 13.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.138 4.138 3 C -0.196 4.196 4 C 0.011 3.989 5 N -0.818 5.818 6 C 0.122 3.878 7 C -0.577 4.577 8 H 0.079 0.921 9 C -0.137 4.137 10 N -0.527 5.527 11 Si 0.715 3.285 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.209 1.209 15 S 2.787 3.213 16 O -0.964 6.964 17 O -0.953 6.953 18 C -0.865 4.865 19 C 0.056 3.944 20 C -0.285 4.285 21 C 0.201 3.799 22 N -0.327 5.327 23 C -0.052 4.052 24 C -0.052 4.052 25 N -0.277 5.277 26 C 0.083 3.917 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.170 0.830 40 H 0.155 0.845 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.111 0.889 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.066 6.886 12.209 14.348 hybrid contribution 0.686 -1.959 0.626 2.168 sum -2.380 4.927 12.835 13.952 Atomic orbital electron populations 1.21748 0.95251 1.01531 1.01397 1.21571 0.95279 0.97026 0.99934 1.21914 1.00826 0.95534 1.01331 1.21168 0.80077 1.00978 0.96650 1.57364 1.14295 1.44187 1.65958 1.19235 0.94214 0.82304 0.92010 1.21597 1.40228 0.96619 0.99230 0.92081 1.24910 0.95208 0.98569 0.95004 1.69936 1.40090 1.27416 1.15215 0.86606 0.77844 0.83034 0.80987 1.19837 1.20885 1.20854 1.01702 0.73294 0.73282 0.73067 1.93548 1.70015 1.45562 1.87249 1.93535 1.42146 1.86768 1.72839 1.31788 1.08097 1.20439 1.26206 1.21079 0.92033 0.85352 0.95984 1.21449 1.04116 1.09323 0.93650 1.18517 0.89077 0.87343 0.84995 1.46320 1.22648 1.58296 1.05435 1.21761 0.86295 0.95650 1.01494 1.21666 0.92163 1.00561 0.90759 1.67162 1.21771 1.16710 1.22011 1.22088 0.94304 0.89465 0.85804 0.92809 0.92944 0.92680 0.90551 0.93543 0.93809 0.91393 0.90106 0.91660 0.94027 0.92963 0.92658 0.83006 0.84482 0.92748 0.90932 0.90602 0.88862 0.92917 0.92982 0.81580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.19 37.15 0.34 -1.43 16 2 C -0.12 -1.83 3.12 -90.62 -0.28 -2.11 16 3 C -0.14 -2.20 7.62 37.16 0.28 -1.91 16 4 C 0.14 2.35 4.97 -4.04 -0.02 2.33 16 5 N -0.98 -19.69 2.49 -115.66 -0.29 -19.98 16 6 C 0.24 5.89 5.43 -5.19 -0.03 5.86 16 7 C -0.54 -13.84 9.38 -34.44 -0.32 -14.16 16 8 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 9 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -24.93 13.29 55.43 0.74 -24.19 16 11 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 S 2.70 53.06 4.87 -107.50 -0.52 52.53 16 16 O -0.97 -18.40 12.70 -57.17 -0.73 -19.12 16 17 O -0.96 -21.86 15.91 -57.17 -0.91 -22.77 16 18 C -0.77 -14.28 5.99 -39.42 -0.24 -14.51 16 19 C 0.08 1.50 9.64 -39.32 -0.38 1.12 16 20 C -0.26 -4.20 9.27 -39.23 -0.36 -4.57 16 21 C 0.43 6.90 7.37 -155.02 -1.14 5.76 16 22 N -0.61 -7.73 3.39 -189.66 -0.64 -8.37 16 23 C 0.09 0.84 10.32 59.85 0.62 1.45 16 24 C 0.09 0.94 10.71 59.85 0.64 1.58 16 25 N -0.56 -9.30 8.85 -12.44 -0.11 -9.41 16 26 C 0.24 4.12 10.67 -17.57 -0.19 3.93 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 31 H 0.05 0.82 5.78 -51.93 -0.30 0.52 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.06 7.45 -51.93 -0.39 0.67 16 34 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 35 H 0.07 0.98 7.61 -51.93 -0.40 0.59 16 36 H 0.04 1.04 8.05 -51.93 -0.42 0.62 16 37 H 0.05 1.38 6.91 -51.93 -0.36 1.02 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.15 2.81 7.70 -52.49 -0.40 2.40 16 40 H 0.14 1.83 6.03 -52.49 -0.32 1.51 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 43 H 0.08 0.71 5.98 -51.93 -0.31 0.40 16 44 H 0.09 1.08 6.82 -51.93 -0.35 0.73 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.17 2.40 7.62 -52.48 -0.40 2.00 16 LS Contribution 388.85 15.07 5.86 5.86 Total: -1.00 -31.74 388.85 -10.21 -41.95 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.41 Total: 2.91 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -1.18 Total: -15.00 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -0.30 Total: -61.96 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -1.64 Total: -41.90 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 53.06 SS G_CDS: -0.52 Total: 52.53 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.74 -10.21 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804990872.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.621 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds