Wall clock time and date at job start Sat Apr 11 2020 06:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47096 * 2 1 4 4 C 1.38221 * 120.35731 * 125.02306 * 3 2 1 5 5 C 1.39722 * 118.48802 * 179.97438 * 4 3 2 6 6 N 1.38545 * 120.49331 * 180.02562 * 5 4 3 7 7 N 1.40107 * 120.00304 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00057 * 179.97438 * 7 6 5 9 9 O 1.21280 * 120.00270 * 359.97438 * 8 7 6 10 10 C 1.50704 * 119.99830 * 179.97438 * 8 7 6 11 11 C 1.53000 * 109.46598 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.46598 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00074 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00287 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99428 * 359.97438 * 14 12 11 16 16 Si 1.86790 * 120.00319 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47476 * 59.99635 * 16 14 12 18 18 H 1.48500 * 109.47172 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47227 * 299.99716 * 16 14 12 20 20 N 1.32847 * 119.01881 * 359.75438 * 5 4 3 21 21 C 1.32528 * 120.61349 * 0.50010 * 20 5 4 22 22 C 1.48412 * 119.17257 * 179.76475 * 21 20 5 23 23 C 1.39270 * 119.72166 * 359.72565 * 22 21 20 24 24 C 1.38485 * 119.06868 * 179.97438 * 23 22 21 25 25 C 1.38724 * 118.49646 * 0.02562 * 24 23 22 26 26 C 1.38357 * 119.35045 * 0.25360 * 25 24 23 27 27 N 1.31672 * 120.89052 * 359.44760 * 26 25 24 28 28 N 1.32390 * 120.35379 * 304.99716 * 3 2 1 29 29 H 1.09008 * 109.46637 * 300.00097 * 1 2 3 30 30 H 1.08996 * 109.47209 * 59.99765 * 1 2 3 31 31 H 1.09004 * 109.46885 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.46987 * 239.99670 * 2 1 3 33 33 H 1.08998 * 109.47048 * 119.99471 * 2 1 3 34 34 H 1.07998 * 120.76093 * 359.95799 * 4 3 2 35 35 H 0.97000 * 120.00322 * 359.97438 * 6 5 4 36 36 H 0.97000 * 119.99379 * 359.97438 * 7 6 5 37 37 H 1.08993 * 109.47154 * 299.99909 * 10 8 7 38 38 H 1.08994 * 109.46826 * 60.00244 * 10 8 7 39 39 H 1.08992 * 109.47608 * 299.99429 * 11 10 8 40 40 H 1.08994 * 109.47443 * 60.00486 * 11 10 8 41 41 H 0.97005 * 119.99605 * 179.97438 * 15 14 12 42 42 H 1.07997 * 120.46698 * 359.97438 * 23 22 21 43 43 H 1.07995 * 120.75024 * 180.02562 * 24 23 22 44 44 H 1.08002 * 120.31971 * 179.97438 * 25 24 23 45 45 H 1.08003 * 119.54806 * 179.74653 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9106 1.8513 0.9767 5 6 3.3518 3.1764 0.9391 6 7 4.2326 3.6516 1.8971 7 7 4.6681 4.9825 1.8499 8 6 5.5245 5.4448 2.7822 9 8 5.9180 4.7090 3.6623 10 6 5.9933 6.8762 2.7310 11 6 6.9518 7.1407 3.8938 12 6 7.4211 8.5718 3.8422 13 1 7.0710 9.2270 3.0583 14 6 8.2982 9.0446 4.7952 15 7 8.7249 8.2466 5.7496 16 14 8.8793 10.8187 4.7318 17 1 7.7094 11.7269 4.8390 18 1 9.8107 11.0752 5.8595 19 1 9.5803 11.0643 3.4459 20 7 2.9185 3.9726 -0.0321 21 6 2.0724 3.5220 -0.9472 22 6 1.6049 4.4406 -2.0150 23 6 2.0545 5.7585 -2.0377 24 6 1.6100 6.6039 -3.0405 25 6 0.7292 6.1018 -3.9874 26 6 0.3193 4.7832 -3.9004 27 7 0.7623 3.9995 -2.9395 28 7 1.6376 2.2700 -0.9358 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.2478 1.1787 1.7515 35 1 4.5474 3.0631 2.6011 36 1 4.3530 5.5710 1.1461 37 1 6.5087 7.0562 1.7876 38 1 5.1344 7.5427 2.8088 39 1 6.4369 6.9606 4.8374 40 1 7.8107 6.4741 3.8155 41 1 9.3423 8.5790 6.4199 42 1 2.7402 6.1163 -1.2840 43 1 1.9415 7.6308 -3.0844 44 1 0.3636 6.7353 -4.7820 45 1 -0.3695 4.3901 -4.6335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812507212.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:38 Heat of formation + Delta-G solvation = 73.978387 kcal Electronic energy + Delta-G solvation = -27697.385195 eV Core-core repulsion = 23715.973545 eV Total energy + Delta-G solvation = -3981.411650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.38512 -40.14043 -39.41796 -36.63069 -35.16246 -33.57358 -33.35542 -32.69422 -31.80528 -31.34752 -30.64791 -29.21523 -25.84793 -25.48276 -24.75406 -23.68646 -22.52745 -22.11483 -21.42190 -20.13413 -18.59722 -18.00837 -17.21887 -16.65615 -16.47064 -16.00204 -15.89031 -15.68843 -15.61492 -15.16053 -15.09134 -14.60307 -14.49142 -14.37591 -13.99118 -13.95457 -13.51542 -13.36987 -13.05665 -12.59070 -12.26449 -12.16643 -12.03164 -11.79895 -11.43961 -11.28346 -11.02413 -10.96492 -10.68598 -10.34377 -10.26144 -10.07485 -10.02241 -9.83541 -9.75304 -9.52056 -9.33244 -9.17855 -9.06883 -8.38718 -7.79463 -6.02508 -4.07507 0.11324 0.98403 1.10237 1.35487 1.85525 2.97038 3.09264 3.30905 3.34833 3.35971 3.37350 3.67457 3.89827 4.11055 4.32654 4.42007 4.55072 4.60229 4.70640 4.75580 4.85320 4.92124 4.98459 5.02839 5.19167 5.26332 5.28881 5.32756 5.45878 5.53327 5.61727 5.72638 5.80983 5.85126 5.98666 6.05722 6.05902 6.10945 6.29825 6.52991 6.72613 6.84051 7.32596 7.61236 7.66277 7.68495 7.74531 7.98057 8.05811 8.29239 8.56503 8.99922 9.56446 11.08340 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011500 B = 0.002287 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.291915 B =12239.108848 C =14585.115435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 C 0.209 3.791 4 C -0.283 4.283 5 C 0.447 3.553 6 N -0.502 5.502 7 N -0.531 5.531 8 C 0.511 3.489 9 O -0.534 6.534 10 C -0.117 4.117 11 C 0.038 3.962 12 C -0.530 4.530 13 H 0.057 0.943 14 C 0.059 3.941 15 N -0.889 5.889 16 Si 0.895 3.105 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 N -0.575 5.575 21 C 0.411 3.589 22 C 0.172 3.828 23 C -0.120 4.120 24 C -0.083 4.083 25 C -0.159 4.159 26 C 0.094 3.906 27 N -0.440 5.440 28 N -0.520 5.520 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.146 0.854 35 H 0.444 0.556 36 H 0.429 0.571 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.262 0.738 42 H 0.149 0.851 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.622 -11.735 -18.891 29.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 C 0.066 3.934 4 C -0.313 4.313 5 C 0.201 3.799 6 N -0.228 5.228 7 N -0.281 5.281 8 C 0.300 3.700 9 O -0.408 6.408 10 C -0.159 4.159 11 C 0.001 3.999 12 C -0.568 4.568 13 H 0.075 0.925 14 C -0.143 4.143 15 N -0.527 5.527 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 N -0.302 5.302 21 C 0.143 3.857 22 C 0.035 3.965 23 C -0.142 4.142 24 C -0.109 4.109 25 C -0.179 4.179 26 C -0.065 4.065 27 N -0.149 5.149 28 N -0.239 5.239 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.164 0.836 35 H 0.289 0.711 36 H 0.270 0.730 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.167 0.833 43 H 0.159 0.841 44 H 0.156 0.844 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -18.667 -12.400 -18.651 29.156 hybrid contribution 0.993 1.394 0.636 1.826 sum -17.674 -11.006 -18.014 27.532 Atomic orbital electron populations 1.21663 0.93594 1.01859 1.03011 1.20519 0.97401 0.89422 1.03587 1.21382 0.88651 0.96049 0.87353 1.21879 1.07539 0.95781 1.06088 1.18175 0.86540 0.88646 0.86494 1.43239 1.46354 1.03466 1.29755 1.45531 1.48653 1.00486 1.33454 1.22116 0.76455 0.91824 0.79650 1.90697 1.56061 1.58789 1.35216 1.21893 1.01926 0.87435 1.04637 1.18930 0.93258 0.96543 0.91213 1.21139 1.27430 0.96115 1.12100 0.92478 1.25023 0.96228 0.97719 0.95373 1.69985 1.32615 1.35498 1.14643 0.86619 0.78626 0.84922 0.77578 1.20193 1.21271 1.20200 1.67488 1.18237 1.38364 1.06140 1.20276 0.87768 0.88034 0.89644 1.18697 0.95252 0.90114 0.92468 1.22204 0.99630 0.93184 0.99161 1.21641 0.95506 1.00429 0.93312 1.22359 0.98302 0.97360 0.99924 1.22801 0.97837 0.90358 0.95523 1.67533 1.08343 1.37611 1.01435 1.68242 1.27231 1.02768 1.25644 0.92930 0.91097 0.92152 0.89325 0.89903 0.83581 0.71076 0.72977 0.89508 0.89507 0.95631 0.95635 0.92807 0.83321 0.84079 0.84436 0.82248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.78 37.16 0.36 -0.72 16 2 C -0.07 -0.54 6.36 -27.88 -0.18 -0.72 16 3 C 0.21 2.27 6.20 -82.36 -0.51 1.76 16 4 C -0.28 -3.00 9.66 -39.03 -0.38 -3.38 16 5 C 0.45 5.62 7.63 -154.86 -1.18 4.44 16 6 N -0.50 -6.62 6.41 31.23 0.20 -6.42 16 7 N -0.53 -7.63 6.29 31.22 0.20 -7.44 16 8 C 0.51 9.27 7.95 -10.98 -0.09 9.18 16 9 O -0.53 -11.72 15.82 5.56 0.09 -11.63 16 10 C -0.12 -2.23 5.64 -27.88 -0.16 -2.38 16 11 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 12 C -0.53 -14.52 9.11 -34.44 -0.31 -14.83 16 13 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 16 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 20 N -0.57 -7.52 8.49 -10.36 -0.09 -7.61 16 21 C 0.41 5.50 7.57 -157.00 -1.19 4.31 16 22 C 0.17 2.11 6.75 -82.95 -0.56 1.55 16 23 C -0.12 -1.19 9.60 -39.11 -0.38 -1.57 16 24 C -0.08 -0.62 10.17 -39.31 -0.40 -1.02 16 25 C -0.16 -1.07 10.11 -39.36 -0.40 -1.46 16 26 C 0.09 0.78 11.18 -17.58 -0.20 0.59 16 27 N -0.44 -5.21 10.03 -9.77 -0.10 -5.31 16 28 N -0.52 -6.78 9.68 -7.47 -0.07 -6.86 16 29 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 30 H 0.07 0.65 7.98 -51.93 -0.41 0.23 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.47 7.93 -51.93 -0.41 0.05 16 34 H 0.15 1.14 8.00 -52.49 -0.42 0.72 16 35 H 0.44 5.61 8.01 -182.59 -1.46 4.15 16 36 H 0.43 5.34 7.99 -182.59 -1.46 3.88 16 37 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 39 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 40 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.15 1.39 7.50 -52.49 -0.39 1.00 16 43 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 44 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 45 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 392.83 15.07 5.92 5.92 Total: -1.00 -35.35 392.83 -12.24 -47.59 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -8.33 Total: 3.47 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -5.78 Total: -1.83 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: 0.87 Total: -59.71 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.35 -12.24 -47.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812507212.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.566 kcal (2) G-P(sol) polarization free energy of solvation -35.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds