Wall clock time and date at job start Sat Apr 11 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47096 * 2 1 4 4 C 1.38221 * 120.35731 * 125.02306 * 3 2 1 5 5 C 1.39722 * 118.48802 * 179.97438 * 4 3 2 6 6 N 1.38545 * 120.49331 * 180.02562 * 5 4 3 7 7 N 1.40107 * 120.00304 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00057 * 179.97438 * 7 6 5 9 9 O 1.21280 * 120.00270 * 359.97438 * 8 7 6 10 10 C 1.50704 * 119.99830 * 179.97438 * 8 7 6 11 11 C 1.53000 * 109.46598 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.46598 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00074 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00287 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99428 * 359.97438 * 14 12 11 16 16 Si 1.86790 * 120.00319 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47476 * 59.99635 * 16 14 12 18 18 H 1.48500 * 109.47172 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47227 * 299.99716 * 16 14 12 20 20 N 1.32847 * 119.01881 * 359.75438 * 5 4 3 21 21 C 1.32528 * 120.61349 * 0.50010 * 20 5 4 22 22 C 1.48412 * 119.17257 * 179.76475 * 21 20 5 23 23 C 1.39270 * 119.72166 * 359.72565 * 22 21 20 24 24 C 1.38485 * 119.06868 * 179.97438 * 23 22 21 25 25 C 1.38724 * 118.49646 * 0.02562 * 24 23 22 26 26 C 1.38357 * 119.35045 * 0.25360 * 25 24 23 27 27 N 1.31672 * 120.89052 * 359.44760 * 26 25 24 28 28 N 1.32390 * 120.35379 * 304.99716 * 3 2 1 29 29 H 1.09008 * 109.46637 * 300.00097 * 1 2 3 30 30 H 1.08996 * 109.47209 * 59.99765 * 1 2 3 31 31 H 1.09004 * 109.46885 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.46987 * 239.99670 * 2 1 3 33 33 H 1.08998 * 109.47048 * 119.99471 * 2 1 3 34 34 H 1.07998 * 120.76093 * 359.95799 * 4 3 2 35 35 H 0.97000 * 120.00322 * 359.97438 * 6 5 4 36 36 H 0.97000 * 119.99379 * 359.97438 * 7 6 5 37 37 H 1.08993 * 109.47154 * 299.99909 * 10 8 7 38 38 H 1.08994 * 109.46826 * 60.00244 * 10 8 7 39 39 H 1.08992 * 109.47608 * 299.99429 * 11 10 8 40 40 H 1.08994 * 109.47443 * 60.00486 * 11 10 8 41 41 H 0.97005 * 119.99605 * 179.97438 * 15 14 12 42 42 H 1.07997 * 120.46698 * 359.97438 * 23 22 21 43 43 H 1.07995 * 120.75024 * 180.02562 * 24 23 22 44 44 H 1.08002 * 120.31971 * 179.97438 * 25 24 23 45 45 H 1.08003 * 119.54806 * 179.74653 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9106 1.8513 0.9767 5 6 3.3518 3.1764 0.9391 6 7 4.2326 3.6516 1.8971 7 7 4.6681 4.9825 1.8499 8 6 5.5245 5.4448 2.7822 9 8 5.9180 4.7090 3.6623 10 6 5.9933 6.8762 2.7310 11 6 6.9518 7.1407 3.8938 12 6 7.4211 8.5718 3.8422 13 1 7.0710 9.2270 3.0583 14 6 8.2982 9.0446 4.7952 15 7 8.7249 8.2466 5.7496 16 14 8.8793 10.8187 4.7318 17 1 7.7094 11.7269 4.8390 18 1 9.8107 11.0752 5.8595 19 1 9.5803 11.0643 3.4459 20 7 2.9185 3.9726 -0.0321 21 6 2.0724 3.5220 -0.9472 22 6 1.6049 4.4406 -2.0150 23 6 2.0545 5.7585 -2.0377 24 6 1.6100 6.6039 -3.0405 25 6 0.7292 6.1018 -3.9874 26 6 0.3193 4.7832 -3.9004 27 7 0.7623 3.9995 -2.9395 28 7 1.6376 2.2700 -0.9358 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.2478 1.1787 1.7515 35 1 4.5474 3.0631 2.6011 36 1 4.3530 5.5710 1.1461 37 1 6.5087 7.0562 1.7876 38 1 5.1344 7.5427 2.8088 39 1 6.4369 6.9606 4.8374 40 1 7.8107 6.4741 3.8155 41 1 9.3423 8.5790 6.4199 42 1 2.7402 6.1163 -1.2840 43 1 1.9415 7.6308 -3.0844 44 1 0.3636 6.7353 -4.7820 45 1 -0.3695 4.3901 -4.6335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812507212.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:37 Heat of formation + Delta-G solvation = 51.234328 kcal Electronic energy + Delta-G solvation = -27698.371451 eV Core-core repulsion = 23715.973545 eV Total energy + Delta-G solvation = -3982.397906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.27865 -40.99197 -40.66568 -37.77914 -35.97655 -35.57616 -34.40620 -33.45682 -33.03973 -32.49873 -31.65295 -30.29636 -27.63867 -26.29025 -25.66439 -24.33953 -23.82734 -23.36395 -22.24617 -21.59716 -19.62183 -19.20226 -18.53086 -17.81051 -17.61628 -16.99471 -16.83207 -16.62553 -16.51207 -16.46525 -16.34219 -16.20433 -15.30434 -15.11972 -15.03743 -14.88510 -14.62292 -14.38523 -14.22895 -13.94751 -13.60663 -13.27476 -13.06463 -12.77455 -12.74663 -12.52858 -12.42679 -12.11558 -11.93494 -11.86633 -11.67970 -11.34168 -11.34016 -11.07541 -11.04257 -10.78979 -10.54740 -10.46375 -10.26441 -9.82901 -8.88955 -8.17596 -6.31049 -0.67688 0.19232 0.34806 0.58173 0.72086 1.43989 1.47662 1.53593 1.55318 2.20257 2.43487 2.57428 2.82919 3.08867 3.16096 3.20776 3.53862 3.74649 3.88464 4.01159 4.05686 4.15686 4.19144 4.24368 4.32405 4.40010 4.44635 4.51628 4.55167 4.61106 4.74048 4.87605 4.98965 5.04661 5.10616 5.17571 5.19578 5.26318 5.41718 5.50284 5.57826 5.62019 5.70485 5.79161 5.85318 6.15712 6.22072 6.51995 6.86772 6.91775 7.13784 7.26133 7.39089 8.94721 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011500 B = 0.002287 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.291915 B =12239.108848 C =14585.115435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.069 4.069 3 C 0.199 3.801 4 C -0.277 4.277 5 C 0.432 3.568 6 N -0.505 5.505 7 N -0.512 5.512 8 C 0.516 3.484 9 O -0.580 6.580 10 C -0.107 4.107 11 C 0.043 3.957 12 C -0.542 4.542 13 H 0.078 0.922 14 C -0.006 4.006 15 N -0.937 5.937 16 Si 0.972 3.028 17 H -0.262 1.262 18 H -0.290 1.290 19 H -0.262 1.262 20 N -0.582 5.582 21 C 0.394 3.606 22 C 0.139 3.861 23 C -0.130 4.130 24 C -0.083 4.083 25 C -0.144 4.144 26 C 0.084 3.916 27 N -0.473 5.473 28 N -0.536 5.536 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.175 0.825 35 H 0.446 0.554 36 H 0.439 0.561 37 H 0.113 0.887 38 H 0.113 0.887 39 H -0.014 1.014 40 H -0.014 1.014 41 H 0.262 0.738 42 H 0.148 0.852 43 H 0.170 0.830 44 H 0.176 0.824 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.934 -10.550 -21.297 31.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 C 0.057 3.943 4 C -0.306 4.306 5 C 0.188 3.812 6 N -0.234 5.234 7 N -0.260 5.260 8 C 0.304 3.696 9 O -0.458 6.458 10 C -0.148 4.148 11 C 0.005 3.995 12 C -0.580 4.580 13 H 0.097 0.903 14 C -0.204 4.204 15 N -0.577 5.577 16 Si 0.796 3.204 17 H -0.187 1.187 18 H -0.216 1.216 19 H -0.187 1.187 20 N -0.309 5.309 21 C 0.126 3.874 22 C 0.003 3.997 23 C -0.152 4.152 24 C -0.108 4.108 25 C -0.164 4.164 26 C -0.076 4.076 27 N -0.183 5.183 28 N -0.255 5.255 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.192 0.808 35 H 0.291 0.709 36 H 0.283 0.717 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.005 0.995 40 H 0.005 0.995 41 H 0.071 0.929 42 H 0.165 0.835 43 H 0.188 0.812 44 H 0.193 0.807 45 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -20.032 -11.217 -21.126 31.200 hybrid contribution 1.262 0.953 1.236 2.007 sum -18.770 -10.264 -19.890 29.211 Atomic orbital electron populations 1.21618 0.93593 1.02831 1.01624 1.20660 0.97274 0.87557 1.05191 1.21995 0.88362 0.97209 0.86766 1.22197 1.06666 0.95272 1.06440 1.18431 0.86766 0.89535 0.86494 1.43245 1.47158 1.02549 1.30472 1.45057 1.47092 1.01540 1.32334 1.21753 0.76805 0.91338 0.79678 1.90683 1.58083 1.59737 1.37278 1.21620 1.01634 0.88751 1.02751 1.18703 0.93007 0.95479 0.92302 1.21669 1.27030 0.96975 1.12346 0.90343 1.26108 0.96513 1.02840 0.94933 1.70166 1.33662 1.38069 1.15790 0.85394 0.78348 0.78776 0.77861 1.18701 1.21569 1.18710 1.67461 1.18429 1.38689 1.06335 1.20698 0.87939 0.88594 0.90156 1.18807 0.96871 0.90923 0.93117 1.22311 0.99913 0.92843 1.00099 1.22035 0.95039 1.01354 0.92417 1.22772 0.96705 0.96922 1.00002 1.23364 0.97926 0.91149 0.95114 1.67470 1.09162 1.39198 1.02469 1.68297 1.27635 1.03086 1.26526 0.93566 0.93190 0.89972 0.88623 0.87281 0.80766 0.70852 0.71666 0.86914 0.86908 0.99537 0.99542 0.92893 0.83466 0.81235 0.80691 0.79737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.78 71.98 0.70 -1.25 16 2 C -0.07 -0.95 6.36 29.85 0.19 -0.76 16 3 C 0.20 4.22 6.20 42.47 0.26 4.48 16 4 C -0.28 -5.62 9.66 22.62 0.22 -5.40 16 5 C 0.43 10.76 7.63 133.23 1.02 11.77 16 6 N -0.51 -13.27 6.41 -55.10 -0.35 -13.62 16 7 N -0.51 -14.52 6.29 -173.53 -1.09 -15.61 16 8 C 0.52 18.90 7.95 87.66 0.70 19.60 16 9 O -0.58 -26.46 15.82 -3.03 -0.05 -26.51 16 10 C -0.11 -3.99 5.64 29.85 0.17 -3.83 16 11 C 0.04 2.29 4.26 29.85 0.13 2.41 16 12 C -0.54 -29.79 9.11 25.60 0.23 -29.56 16 13 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 14 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 15 N -0.94 -58.30 13.29 21.45 0.28 -58.01 16 16 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 17 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 18 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 19 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 20 N -0.58 -15.31 8.49 -186.70 -1.59 -16.90 16 21 C 0.39 10.75 7.57 137.60 1.04 11.79 16 22 C 0.14 3.44 6.75 41.98 0.28 3.72 16 23 C -0.13 -2.50 9.60 22.58 0.22 -2.29 16 24 C -0.08 -1.05 10.17 22.45 0.23 -0.82 16 25 C -0.14 -1.51 10.11 22.41 0.23 -1.28 16 26 C 0.08 1.26 11.18 84.75 0.95 2.21 16 27 N -0.47 -11.15 10.03 -184.82 -1.85 -13.00 16 28 N -0.54 -14.17 9.68 -177.53 -1.72 -15.89 16 29 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.05 0.91 7.98 -2.39 -0.02 0.89 16 31 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.11 0.93 7.93 -2.39 -0.02 0.91 16 34 H 0.17 2.40 8.00 -2.91 -0.02 2.38 16 35 H 0.45 11.34 8.01 -213.32 -1.71 9.63 16 36 H 0.44 10.54 7.99 -213.32 -1.70 8.84 16 37 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 38 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 39 H -0.01 -0.83 8.10 -2.39 -0.02 -0.85 16 40 H -0.01 -0.84 8.10 -2.39 -0.02 -0.86 16 41 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 42 H 0.15 2.72 7.50 -2.91 -0.02 2.70 16 43 H 0.17 1.11 8.06 -2.91 -0.02 1.08 16 44 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 45 H 0.19 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -81.36 392.83 0.31 -81.05 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -2.37 Total: 22.22 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 7.02 Total: 10.91 kcal Atomic # 7 Polarization: -126.71 SS G_CDS: -6.32 Total: -133.03 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.05 Total: -26.51 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -81.36 0.31 -81.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812507212.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.280 kcal (2) G-P(sol) polarization free energy of solvation -81.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds