Wall clock time and date at job start Sat Apr 11 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.53002 * 109.47454 * 239.99992 * 2 1 3 5 5 O 1.45206 * 109.47129 * 119.99823 * 2 1 3 6 6 C 1.34226 * 116.99826 * 60.00523 * 5 2 1 7 7 O 1.20826 * 120.00044 * 359.97438 * 6 5 2 8 8 C 1.50700 * 119.99715 * 180.02562 * 6 5 2 9 9 C 1.50697 * 112.85279 * 50.33009 * 8 6 5 10 10 O 1.20827 * 120.00105 * 129.66819 * 9 8 6 11 11 O 1.34224 * 119.99869 * 309.66874 * 9 8 6 12 12 C 1.45202 * 117.00054 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.47181 * 179.97438 * 12 11 9 14 14 O 1.21285 * 120.00070 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00090 * 179.97438 * 13 12 11 16 16 C 1.46501 * 120.00068 * 179.97438 * 15 13 12 17 17 C 1.50704 * 109.47190 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00083 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00061 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00083 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99947 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47336 * 60.00339 * 21 19 17 23 23 H 1.48503 * 109.47247 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47243 * 300.00003 * 21 19 17 25 25 C 1.53782 * 113.61499 * 279.12924 * 8 6 5 26 26 C 1.53950 * 87.02336 * 220.05055 * 25 8 6 27 27 C 1.53781 * 87.11280 * 25.36425 * 26 25 8 28 28 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 29 29 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 30 30 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47045 * 299.99867 * 3 2 1 33 33 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 34 34 H 1.09004 * 109.47006 * 299.99897 * 4 2 1 35 35 H 1.09002 * 109.46838 * 59.99394 * 4 2 1 36 36 H 1.08992 * 109.47056 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.46735 * 299.99604 * 12 11 9 38 38 H 1.08998 * 109.47892 * 59.99384 * 12 11 9 39 39 H 0.97002 * 120.00100 * 359.97438 * 15 13 12 40 40 H 1.09000 * 109.47258 * 299.99892 * 16 15 13 41 41 H 1.09000 * 109.47078 * 60.00175 * 16 15 13 42 42 H 0.96995 * 119.99922 * 180.02562 * 20 19 17 43 43 H 1.09000 * 113.61410 * 334.57351 * 25 8 6 44 44 H 1.09000 * 113.61147 * 105.47096 * 25 8 6 45 45 H 1.09001 * 113.53755 * 270.81570 * 26 25 8 46 46 H 1.08996 * 113.66796 * 139.93367 * 26 25 8 47 47 H 1.08999 * 113.61801 * 220.09104 * 27 26 25 48 48 H 1.09003 * 113.69320 * 89.19331 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6535 -1.9684 1.3379 7 8 0.9561 -2.5025 0.5082 8 6 2.1175 -2.7433 2.5442 9 6 1.8572 -2.0198 3.8402 10 8 1.3021 -2.5899 4.7495 11 8 2.2419 -0.7420 3.9845 12 6 1.9592 -0.1084 5.2600 13 6 2.4600 1.3128 5.2369 14 8 3.0022 1.7486 4.2434 15 7 2.3053 2.0994 6.3203 16 6 2.7926 3.4808 6.2980 17 6 2.4980 4.1389 7.6214 18 1 1.9975 3.5838 8.4009 19 6 2.8666 5.4499 7.8366 20 7 3.4748 6.1264 6.8869 21 14 2.5008 6.2657 9.4767 22 1 3.1821 5.5184 10.5642 23 1 2.9937 7.6664 9.4538 24 1 1.0352 6.2612 9.7159 25 6 3.5525 -3.2811 2.4163 26 6 3.0448 -4.5678 3.0921 27 6 1.6505 -4.2086 2.5521 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6768 -1.7490 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2489 37 1 0.8837 -0.1122 5.4371 38 1 2.4606 -0.6570 6.0574 39 1 1.8713 1.7510 7.1147 40 1 3.8683 3.4839 6.1218 41 1 2.2922 4.0298 5.5003 42 1 3.7344 7.0486 7.0384 43 1 3.8738 -3.4270 1.3851 44 1 4.2797 -2.7309 3.0135 45 1 3.1114 -4.5437 4.1798 46 1 3.4579 -5.4802 2.6619 47 1 0.8444 -4.4061 3.2587 48 1 1.4494 -4.6081 1.5581 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849957810.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:59 Heat of formation + Delta-G solvation = -187.831940 kcal Electronic energy + Delta-G solvation = -31101.985984 eV Core-core repulsion = 26737.326965 eV Total energy + Delta-G solvation = -4364.659019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.83492 -40.51487 -39.09705 -38.26623 -36.83206 -36.27107 -34.25449 -34.14887 -32.42225 -29.69056 -28.21785 -27.55051 -27.41845 -26.58821 -26.18193 -23.35158 -22.67356 -22.17493 -20.13303 -19.96338 -19.50215 -18.28746 -17.55978 -17.11507 -16.84263 -16.57184 -16.26949 -15.84567 -15.54687 -15.16953 -15.14445 -14.63916 -14.54665 -14.36240 -14.06255 -13.77688 -13.14405 -13.07039 -12.90999 -12.71213 -12.51595 -12.45706 -12.25155 -12.07379 -12.00140 -11.94546 -11.93728 -11.78398 -11.63531 -11.41144 -11.13063 -11.04881 -10.93929 -10.92434 -10.75677 -10.68140 -10.47558 -10.35915 -10.06258 -9.47031 -9.17529 -8.79020 -7.99596 -6.21009 -4.28494 1.59143 1.91832 2.33517 2.52429 3.17225 3.23031 3.28073 3.29330 3.70006 3.87343 3.94579 4.27034 4.30049 4.36145 4.54977 4.60861 4.67060 4.82091 4.91189 5.08528 5.14868 5.18815 5.23438 5.27600 5.32008 5.37430 5.40408 5.47059 5.50807 5.60241 5.61477 5.65033 5.74228 5.77534 5.87913 5.98422 6.10942 6.16030 6.18687 6.41379 7.20701 7.29140 7.44476 7.45396 7.59163 7.61927 7.90637 8.48779 8.69867 8.95399 9.37932 10.89064 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.002724 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.184391 B =10276.200308 C =11704.537813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.116 3.884 3 C -0.141 4.141 4 C -0.181 4.181 5 O -0.320 6.320 6 C 0.485 3.515 7 O -0.495 6.495 8 C -0.087 4.087 9 C 0.489 3.511 10 O -0.494 6.494 11 O -0.307 6.307 12 C 0.046 3.954 13 C 0.499 3.501 14 O -0.527 6.527 15 N -0.707 5.707 16 C 0.253 3.747 17 C -0.546 4.546 18 H 0.063 0.937 19 C 0.065 3.935 20 N -0.885 5.885 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.108 4.108 26 C -0.141 4.141 27 C -0.100 4.100 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.392 0.608 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.267 0.733 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.094 0.906 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.790 -19.675 -12.378 23.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.080 3.920 3 C -0.198 4.198 4 C -0.239 4.239 5 O -0.236 6.236 6 C 0.327 3.673 7 O -0.384 6.384 8 C -0.089 4.089 9 C 0.330 3.670 10 O -0.381 6.381 11 O -0.221 6.221 12 C -0.032 4.032 13 C 0.282 3.718 14 O -0.404 6.404 15 N -0.358 5.358 16 C 0.133 3.867 17 C -0.584 4.584 18 H 0.082 0.918 19 C -0.139 4.139 20 N -0.522 5.522 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 C -0.145 4.145 26 C -0.178 4.178 27 C -0.137 4.137 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.225 0.775 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.077 0.923 43 H 0.122 0.878 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.104 0.896 47 H 0.112 0.888 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.674 -19.364 -13.128 23.547 hybrid contribution -0.573 0.548 1.340 1.557 sum -3.246 -18.817 -11.788 22.440 Atomic orbital electron populations 1.22491 0.94144 1.04313 1.03090 1.22283 0.94344 0.92803 0.82540 1.21839 1.02616 0.92009 1.03345 1.22492 1.01815 1.02743 0.96812 1.86766 1.68472 1.23588 1.44741 1.22584 0.77163 0.81345 0.86233 1.90573 1.34695 1.70255 1.42870 1.21803 1.03644 0.95280 0.88173 1.22295 0.75571 0.80916 0.88223 1.90680 1.38684 1.67542 1.41227 1.86649 1.73125 1.24995 1.37294 1.22961 1.02737 0.93467 0.84018 1.19816 0.81211 0.86021 0.84749 1.90725 1.42680 1.74640 1.32315 1.46363 1.59503 1.15403 1.14518 1.19157 0.95367 0.74545 0.97675 1.21173 1.40605 0.97599 0.99065 0.91840 1.24943 0.94642 0.96955 0.97386 1.69959 1.38858 1.10602 1.32772 0.86457 0.78757 0.78420 0.83176 1.20023 1.21039 1.20039 1.22984 0.91397 0.96509 1.03633 1.22976 0.95527 0.97826 1.01518 1.22960 0.99098 0.87516 1.04111 0.91736 0.90925 0.90167 0.91199 0.90567 0.90651 0.90111 0.90979 0.91858 0.88521 0.88382 0.77496 0.95264 0.95295 0.92311 0.87779 0.88922 0.89007 0.89608 0.88783 0.87140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 8.37 37.16 0.31 -1.80 16 2 C 0.12 1.41 1.13 -90.62 -0.10 1.31 16 3 C -0.14 -1.67 8.85 37.16 0.33 -1.35 16 4 C -0.18 -1.84 8.37 37.16 0.31 -1.53 16 5 O -0.32 -4.57 9.01 -43.73 -0.39 -4.96 16 6 C 0.48 6.29 6.31 36.01 0.23 6.52 16 7 O -0.50 -6.58 11.41 -18.75 -0.21 -6.79 16 8 C -0.09 -0.99 1.27 -156.00 -0.20 -1.19 16 9 C 0.49 6.79 6.73 36.00 0.24 7.03 16 10 O -0.49 -7.23 15.58 -18.75 -0.29 -7.52 16 11 O -0.31 -4.88 8.87 -47.98 -0.43 -5.31 16 12 C 0.05 0.69 5.94 36.00 0.21 0.90 16 13 C 0.50 9.81 7.91 -10.99 -0.09 9.72 16 14 O -0.53 -12.53 16.50 -14.11 -0.23 -12.76 16 15 N -0.71 -14.35 5.55 -61.47 -0.34 -14.69 16 16 C 0.25 6.51 5.43 -5.19 -0.03 6.48 16 17 C -0.55 -14.47 9.28 -34.44 -0.32 -14.78 16 18 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.88 -25.59 13.29 55.43 0.74 -24.85 16 21 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 25 C -0.11 -0.94 7.22 -25.83 -0.19 -1.13 16 26 C -0.14 -1.06 7.76 -25.83 -0.20 -1.26 16 27 C -0.10 -0.91 6.78 -25.91 -0.18 -1.08 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.99 5.89 -51.93 -0.31 0.69 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 0.89 5.89 -51.93 -0.31 0.59 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 1.28 8.13 -51.93 -0.42 0.85 16 38 H 0.10 1.25 8.13 -51.93 -0.42 0.83 16 39 H 0.39 6.69 8.32 -40.82 -0.34 6.35 16 40 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.10 0.75 8.09 -51.93 -0.42 0.33 16 44 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.09 0.91 7.42 -51.93 -0.39 0.53 16 48 H 0.11 0.92 7.45 -51.93 -0.39 0.53 16 LS Contribution 400.76 15.07 6.04 6.04 Total: -1.00 -33.12 400.76 -7.50 -40.62 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -7.59 Total: 5.26 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 0.24 Total: 9.50 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.40 Total: -39.55 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -1.56 Total: -37.35 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.12 -7.50 -40.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849957810.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.214 kcal (2) G-P(sol) polarization free energy of solvation -33.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds