Wall clock time and date at job start Sat Apr 11 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.53002 * 109.47454 * 239.99992 * 2 1 3 5 5 O 1.45206 * 109.47129 * 119.99823 * 2 1 3 6 6 C 1.34226 * 116.99826 * 60.00523 * 5 2 1 7 7 O 1.20826 * 120.00044 * 359.97438 * 6 5 2 8 8 C 1.50700 * 119.99715 * 180.02562 * 6 5 2 9 9 C 1.50697 * 112.85279 * 50.33009 * 8 6 5 10 10 O 1.20827 * 120.00105 * 129.66819 * 9 8 6 11 11 O 1.34224 * 119.99869 * 309.66874 * 9 8 6 12 12 C 1.45202 * 117.00054 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.47181 * 179.97438 * 12 11 9 14 14 O 1.21285 * 120.00070 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00090 * 179.97438 * 13 12 11 16 16 C 1.46501 * 120.00068 * 179.97438 * 15 13 12 17 17 C 1.50704 * 109.47190 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00083 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00061 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00083 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99947 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47336 * 60.00339 * 21 19 17 23 23 H 1.48503 * 109.47247 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47243 * 300.00003 * 21 19 17 25 25 C 1.53782 * 113.61499 * 279.12924 * 8 6 5 26 26 C 1.53950 * 87.02336 * 220.05055 * 25 8 6 27 27 C 1.53781 * 87.11280 * 25.36425 * 26 25 8 28 28 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 29 29 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 30 30 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47045 * 299.99867 * 3 2 1 33 33 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 34 34 H 1.09004 * 109.47006 * 299.99897 * 4 2 1 35 35 H 1.09002 * 109.46838 * 59.99394 * 4 2 1 36 36 H 1.08992 * 109.47056 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.46735 * 299.99604 * 12 11 9 38 38 H 1.08998 * 109.47892 * 59.99384 * 12 11 9 39 39 H 0.97002 * 120.00100 * 359.97438 * 15 13 12 40 40 H 1.09000 * 109.47258 * 299.99892 * 16 15 13 41 41 H 1.09000 * 109.47078 * 60.00175 * 16 15 13 42 42 H 0.96995 * 119.99922 * 180.02562 * 20 19 17 43 43 H 1.09000 * 113.61410 * 334.57351 * 25 8 6 44 44 H 1.09000 * 113.61147 * 105.47096 * 25 8 6 45 45 H 1.09001 * 113.53755 * 270.81570 * 26 25 8 46 46 H 1.08996 * 113.66796 * 139.93367 * 26 25 8 47 47 H 1.08999 * 113.61801 * 220.09104 * 27 26 25 48 48 H 1.09003 * 113.69320 * 89.19331 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6535 -1.9684 1.3379 7 8 0.9561 -2.5025 0.5082 8 6 2.1175 -2.7433 2.5442 9 6 1.8572 -2.0198 3.8402 10 8 1.3021 -2.5899 4.7495 11 8 2.2419 -0.7420 3.9845 12 6 1.9592 -0.1084 5.2600 13 6 2.4600 1.3128 5.2369 14 8 3.0022 1.7486 4.2434 15 7 2.3053 2.0994 6.3203 16 6 2.7926 3.4808 6.2980 17 6 2.4980 4.1389 7.6214 18 1 1.9975 3.5838 8.4009 19 6 2.8666 5.4499 7.8366 20 7 3.4748 6.1264 6.8869 21 14 2.5008 6.2657 9.4767 22 1 3.1821 5.5184 10.5642 23 1 2.9937 7.6664 9.4538 24 1 1.0352 6.2612 9.7159 25 6 3.5525 -3.2811 2.4163 26 6 3.0448 -4.5678 3.0921 27 6 1.6505 -4.2086 2.5521 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6768 -1.7490 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2489 37 1 0.8837 -0.1122 5.4371 38 1 2.4606 -0.6570 6.0574 39 1 1.8713 1.7510 7.1147 40 1 3.8683 3.4839 6.1218 41 1 2.2922 4.0298 5.5003 42 1 3.7344 7.0486 7.0384 43 1 3.8738 -3.4270 1.3851 44 1 4.2797 -2.7309 3.0135 45 1 3.1114 -4.5437 4.1798 46 1 3.4579 -5.4802 2.6619 47 1 0.8444 -4.4061 3.2587 48 1 1.4494 -4.6081 1.5581 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849957810.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:58 Heat of formation + Delta-G solvation = -207.472382 kcal Electronic energy + Delta-G solvation = -31102.837658 eV Core-core repulsion = 26737.326965 eV Total energy + Delta-G solvation = -4365.510693 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.80455 -41.60461 -40.53711 -39.40053 -37.85788 -37.37639 -36.16856 -35.11435 -34.40971 -31.08532 -29.45093 -28.42500 -28.35455 -28.20612 -26.89286 -24.84910 -24.04892 -23.20753 -21.64485 -21.02390 -20.54905 -19.26565 -19.16752 -18.34168 -17.98958 -17.68199 -17.48398 -17.21444 -16.95720 -16.67019 -16.25275 -16.10103 -15.80778 -15.34834 -15.29694 -14.68208 -14.62649 -14.50778 -14.07632 -13.83576 -13.70488 -13.61417 -13.45824 -13.34337 -13.11188 -12.97571 -12.95860 -12.91653 -12.80110 -12.68576 -12.54747 -12.24287 -12.19039 -12.00141 -11.97652 -11.65625 -11.59780 -11.51978 -11.43970 -11.01158 -10.88835 -10.80342 -9.91602 -8.29364 -6.45936 0.57035 0.86530 1.23776 1.44424 1.47566 1.55904 1.56175 1.59564 2.31323 2.50465 2.90509 3.05814 3.18025 3.41830 3.48510 3.64377 3.67931 3.72070 3.75424 3.90744 3.98499 4.00885 4.23726 4.51232 4.57003 4.58487 4.61346 4.71324 4.73200 4.79069 4.81246 4.86510 4.87226 4.98132 5.03040 5.06887 5.10725 5.19147 5.22766 5.23269 5.28561 5.42220 5.44439 5.63253 5.82409 6.34082 6.62073 6.62949 6.78697 7.20868 7.36498 8.82489 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.002724 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.184391 B =10276.200308 C =11704.537813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.104 3.896 3 C -0.138 4.138 4 C -0.173 4.173 5 O -0.343 6.343 6 C 0.483 3.517 7 O -0.501 6.501 8 C -0.099 4.099 9 C 0.490 3.510 10 O -0.502 6.502 11 O -0.328 6.328 12 C 0.056 3.944 13 C 0.499 3.501 14 O -0.574 6.574 15 N -0.699 5.699 16 C 0.269 3.731 17 C -0.558 4.558 18 H 0.085 0.915 19 C 0.006 3.994 20 N -0.929 5.929 21 Si 0.983 3.017 22 H -0.262 1.262 23 H -0.286 1.286 24 H -0.263 1.263 25 C -0.105 4.105 26 C -0.128 4.128 27 C -0.094 4.094 28 H 0.048 0.952 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.412 0.588 40 H -0.007 1.007 41 H -0.009 1.009 42 H 0.269 0.731 43 H 0.121 0.879 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.114 0.886 47 H 0.087 0.913 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.428 -21.493 -11.641 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.069 3.931 3 C -0.195 4.195 4 C -0.230 4.230 5 O -0.260 6.260 6 C 0.325 3.675 7 O -0.390 6.390 8 C -0.102 4.102 9 C 0.333 3.667 10 O -0.390 6.390 11 O -0.243 6.243 12 C -0.021 4.021 13 C 0.285 3.715 14 O -0.454 6.454 15 N -0.351 5.351 16 C 0.147 3.853 17 C -0.596 4.596 18 H 0.103 0.897 19 C -0.194 4.194 20 N -0.568 5.568 21 Si 0.807 3.193 22 H -0.186 1.186 23 H -0.212 1.212 24 H -0.188 1.188 25 C -0.142 4.142 26 C -0.165 4.165 27 C -0.131 4.131 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.139 0.861 38 H 0.147 0.853 39 H 0.248 0.752 40 H 0.011 0.989 41 H 0.009 0.991 42 H 0.078 0.922 43 H 0.139 0.861 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.132 0.868 47 H 0.105 0.895 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.340 -21.237 -12.365 24.801 hybrid contribution -0.379 1.103 1.033 1.558 sum -3.719 -20.134 -11.332 23.402 Atomic orbital electron populations 1.22454 0.93818 1.03805 1.03469 1.22530 0.94732 0.92872 0.82970 1.21842 1.02203 0.92209 1.03230 1.22424 1.01953 1.02179 0.96445 1.86761 1.68958 1.24410 1.45826 1.22854 0.76944 0.80998 0.86660 1.90559 1.34883 1.70254 1.43331 1.22137 1.06105 0.95751 0.86191 1.22692 0.74984 0.80059 0.89010 1.90666 1.39056 1.67457 1.41806 1.86647 1.73726 1.26295 1.37603 1.22846 1.04139 0.90217 0.84889 1.20580 0.79812 0.87714 0.83418 1.90706 1.44638 1.76034 1.33993 1.46034 1.59575 1.13663 1.15861 1.18599 0.92846 0.77147 0.96750 1.21584 1.40468 0.98110 0.99426 0.89663 1.26029 0.94130 0.97744 1.01506 1.70122 1.40197 1.11065 1.35402 0.85227 0.79107 0.76971 0.78045 1.18638 1.21156 1.18751 1.23110 0.89552 0.96732 1.04820 1.22941 0.94045 0.98324 1.01175 1.23030 0.99887 0.85572 1.04648 0.93308 0.88605 0.90990 0.91795 0.87764 0.93611 0.90857 0.88865 0.91573 0.86133 0.85308 0.75224 0.98917 0.99065 0.92202 0.86108 0.89365 0.89554 0.86792 0.89460 0.86112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.08 8.37 71.98 0.60 -3.48 16 2 C 0.10 2.54 1.13 -10.79 -0.01 2.52 16 3 C -0.14 -3.35 8.85 71.98 0.64 -2.72 16 4 C -0.17 -3.32 8.37 71.98 0.60 -2.72 16 5 O -0.34 -9.98 9.01 -47.09 -0.42 -10.41 16 6 C 0.48 12.38 6.31 71.24 0.45 12.83 16 7 O -0.50 -12.99 11.41 21.96 0.25 -12.74 16 8 C -0.10 -2.19 1.27 -53.15 -0.07 -2.26 16 9 C 0.49 13.24 6.73 71.23 0.48 13.72 16 10 O -0.50 -14.00 15.58 21.96 0.34 -13.66 16 11 O -0.33 -10.40 8.87 -43.00 -0.38 -10.78 16 12 C 0.06 1.62 5.94 71.24 0.42 2.05 16 13 C 0.50 19.95 7.91 87.66 0.69 20.65 16 14 O -0.57 -28.63 16.50 15.75 0.26 -28.37 16 15 N -0.70 -28.69 5.55 -466.78 -2.59 -31.28 16 16 C 0.27 14.42 5.43 85.63 0.46 14.88 16 17 C -0.56 -29.68 9.28 25.60 0.24 -29.45 16 18 H 0.09 4.06 7.60 -2.91 -0.02 4.04 16 19 C 0.01 0.32 5.46 84.65 0.46 0.78 16 20 N -0.93 -55.23 13.29 21.45 0.28 -54.94 16 21 Si 0.98 41.62 29.54 68.60 2.03 43.65 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 23 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 25 C -0.10 -1.66 7.22 31.18 0.23 -1.43 16 26 C -0.13 -1.60 7.76 31.18 0.24 -1.36 16 27 C -0.09 -1.55 6.78 31.12 0.21 -1.34 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.76 5.89 -2.38 -0.01 1.75 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.10 1.86 8.14 -2.39 -0.02 1.85 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.54 5.89 -2.38 -0.01 1.52 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.12 2.97 8.13 -2.39 -0.02 2.95 16 38 H 0.13 2.99 8.13 -2.39 -0.02 2.97 16 39 H 0.41 13.58 8.32 -92.71 -0.77 12.81 16 40 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 42 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 43 H 0.12 1.50 8.09 -2.39 -0.02 1.48 16 44 H 0.09 1.48 8.09 -2.39 -0.02 1.47 16 45 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.09 1.57 7.42 -2.39 -0.02 1.55 16 48 H 0.12 1.75 7.45 -2.39 -0.02 1.73 16 Total: -1.00 -74.78 400.76 5.62 -69.16 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.20 Total: 26.69 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: 5.65 Total: 22.67 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -2.30 Total: -86.22 kcal Atomic # 8 Polarization: -76.00 SS G_CDS: 0.05 Total: -75.95 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -74.78 5.62 -69.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849957810.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.312 kcal (2) G-P(sol) polarization free energy of solvation -74.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds