Wall clock time and date at job start Sat Apr 11 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46991 * 2 1 4 4 N 1.46497 * 109.46961 * 180.02562 * 3 2 1 5 5 C 1.46770 * 124.34952 * 89.99874 * 4 3 2 6 6 C 1.54480 * 105.47236 * 163.00653 * 5 4 3 7 7 H 1.09002 * 110.96791 * 143.53628 * 6 5 4 8 8 C 1.50705 * 110.96789 * 267.26267 * 6 5 4 9 9 O 1.20818 * 120.00168 * 356.91174 * 8 6 5 10 10 O 1.34230 * 119.99756 * 176.91513 * 8 6 5 11 11 C 1.45202 * 116.99779 * 179.97438 * 10 8 6 12 12 H 1.08996 * 109.47104 * 30.00087 * 11 10 8 13 13 C 1.50698 * 109.46750 * 269.99565 * 11 10 8 14 14 H 1.08003 * 119.99953 * 120.00410 * 13 11 10 15 15 C 1.37882 * 120.00159 * 299.99849 * 13 11 10 16 16 N 1.31506 * 119.99998 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99786 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46996 * 90.00228 * 17 15 13 19 19 H 1.48498 * 109.46953 * 210.00124 * 17 15 13 20 20 H 1.48500 * 109.47220 * 329.99905 * 17 15 13 21 21 C 1.52998 * 109.46763 * 149.99859 * 11 10 8 22 22 C 1.50701 * 109.47353 * 294.99695 * 21 11 10 23 23 O 1.20828 * 119.99720 * 0.02562 * 22 21 11 24 24 O 1.34223 * 120.00449 * 180.02562 * 22 21 11 25 25 C 1.45196 * 117.00481 * 179.97438 * 24 22 21 26 26 C 1.52997 * 109.47523 * 179.97438 * 25 24 22 27 27 C 1.54628 * 101.76599 * 25.41755 * 6 5 4 28 28 C 1.34424 * 124.35286 * 270.02678 * 4 3 2 29 29 O 1.21280 * 124.93697 * 0.38752 * 28 4 3 30 30 H 1.09005 * 109.46668 * 300.00012 * 1 2 3 31 31 H 1.08998 * 109.47348 * 59.99083 * 1 2 3 32 32 H 1.08997 * 109.47353 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46429 * 240.00078 * 2 1 3 34 34 H 1.08998 * 109.46956 * 120.00546 * 2 1 3 35 35 H 1.09000 * 109.47118 * 60.00066 * 3 2 1 36 36 H 1.09002 * 109.47250 * 300.00171 * 3 2 1 37 37 H 1.09005 * 110.24126 * 44.00714 * 5 4 3 38 38 H 1.08996 * 110.32088 * 282.04737 * 5 4 3 39 39 H 0.97002 * 120.00384 * 180.02562 * 16 15 13 40 40 H 1.08995 * 109.47892 * 54.99773 * 21 11 10 41 41 H 1.09003 * 109.47138 * 175.00220 * 21 11 10 42 42 H 1.09004 * 109.47358 * 299.99887 * 25 24 22 43 43 H 1.09003 * 109.46878 * 59.99799 * 25 24 22 44 44 H 1.09003 * 109.46895 * 60.00192 * 26 25 24 45 45 H 1.08996 * 109.47657 * 179.97438 * 26 25 24 46 46 H 1.08996 * 109.47269 * 300.00341 * 26 25 24 47 47 H 1.08995 * 110.48559 * 93.88283 * 27 6 5 48 48 H 1.08999 * 110.48739 * 216.52271 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3326 1.4427 -1.2127 6 6 5.7408 1.8777 -0.7501 7 1 6.5148 1.3453 -1.3030 8 6 5.9156 3.3687 -0.8833 9 8 5.0314 4.0404 -1.3596 10 8 7.0535 3.9503 -0.4728 11 6 7.1525 5.3902 -0.6321 12 1 6.1592 5.8329 -0.5595 13 6 7.7463 5.7066 -1.9806 14 1 7.1853 6.2925 -2.6936 15 6 9.0058 5.2482 -2.3040 16 7 9.6888 4.5345 -1.4360 17 14 9.7420 5.6411 -3.9753 18 1 10.4977 6.9169 -3.8958 19 1 10.6599 4.5467 -4.3815 20 1 8.6538 5.7719 -4.9772 21 6 8.0485 5.9644 0.4671 22 6 7.3943 5.7559 1.8086 23 8 6.3216 5.2041 1.8783 24 8 8.0030 6.1831 2.9259 25 6 7.3144 5.9490 4.1826 26 6 8.1557 6.4999 5.3356 27 6 5.7301 1.4516 0.7362 28 6 4.2640 1.4418 1.1088 29 8 3.8356 1.4344 2.2434 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.9378 2.1533 -1.9389 38 1 4.3699 0.4431 -1.6457 39 1 10.5751 4.2123 -1.6633 40 1 9.0135 5.4580 0.4510 41 1 8.1950 7.0310 0.2963 42 1 6.3471 6.4511 4.1659 43 1 7.1656 4.8781 4.3213 44 1 8.3049 7.5708 5.1971 45 1 7.6386 6.3246 6.2789 46 1 9.1229 5.9975 5.3522 47 1 6.1595 0.4563 0.8508 48 1 6.2735 2.1748 1.3444 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870617802.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:12 Heat of formation + Delta-G solvation = -220.368355 kcal Electronic energy + Delta-G solvation = -31468.159458 eV Core-core repulsion = 27102.089554 eV Total energy + Delta-G solvation = -4366.069904 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.56114 -39.78488 -38.75975 -36.44917 -36.03397 -35.30877 -34.63034 -33.14920 -31.58196 -31.41625 -30.24473 -27.49722 -26.50449 -26.17581 -23.81164 -23.07982 -21.83145 -21.65661 -20.04427 -19.56934 -19.16490 -17.39384 -17.12348 -16.66916 -16.45157 -16.12435 -15.68797 -15.50854 -15.44529 -14.77188 -14.64480 -14.50628 -14.34140 -13.88208 -13.65321 -13.42155 -13.08502 -12.87860 -12.81012 -12.51964 -12.33259 -12.19948 -12.14644 -11.91138 -11.66986 -11.54502 -11.47174 -11.42708 -11.25538 -11.15214 -11.07033 -10.90563 -10.79360 -10.77279 -10.30280 -10.11856 -9.70864 -9.56675 -9.49595 -9.33604 -8.83893 -8.78125 -8.57055 -6.30377 -4.48045 2.81071 3.01124 3.12815 3.15052 3.23687 3.26851 3.29865 3.33770 3.77066 4.21220 4.50535 4.59993 4.88398 4.91103 4.98998 5.05773 5.12054 5.15986 5.18150 5.34693 5.40806 5.42112 5.51091 5.53585 5.60298 5.68163 5.75499 5.82700 5.87212 5.92886 5.93903 5.98714 6.04404 6.10984 6.12844 6.15256 6.31693 6.56664 6.68243 6.87580 7.00833 7.24232 7.27239 7.62001 7.88734 7.94301 8.37742 8.50377 8.60389 9.02489 9.28867 10.71782 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008417 B = 0.004287 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3325.688574 B = 6530.367129 C = 9188.569294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.128 3.872 4 N -0.616 5.616 5 C 0.114 3.886 6 C -0.100 4.100 7 H 0.128 0.872 8 C 0.472 3.528 9 O -0.524 6.524 10 O -0.326 6.326 11 C 0.232 3.768 12 H 0.045 0.955 13 C -0.547 4.547 14 H 0.070 0.930 15 C 0.082 3.918 16 N -0.859 5.859 17 Si 0.898 3.102 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.271 1.271 21 C -0.102 4.102 22 C 0.455 3.545 23 O -0.515 6.515 24 O -0.366 6.366 25 C 0.059 3.941 26 C -0.150 4.150 27 C -0.142 4.142 28 C 0.522 3.478 29 O -0.535 6.535 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.268 0.732 40 H 0.141 0.859 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.112 0.888 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.022 -6.051 4.233 9.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C 0.006 3.994 4 N -0.349 5.349 5 C -0.009 4.009 6 C -0.120 4.120 7 H 0.146 0.854 8 C 0.314 3.686 9 O -0.415 6.415 10 O -0.240 6.240 11 C 0.179 3.821 12 H 0.063 0.937 13 C -0.584 4.584 14 H 0.088 0.912 15 C -0.125 4.125 16 N -0.495 5.495 17 Si 0.724 3.276 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.196 1.196 21 C -0.140 4.140 22 C 0.300 3.700 23 O -0.402 6.402 24 O -0.284 6.284 25 C -0.016 4.016 26 C -0.207 4.207 27 C -0.182 4.182 28 C 0.310 3.690 29 O -0.412 6.412 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.158 0.842 41 H 0.121 0.879 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.130 0.870 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.703 -6.059 4.800 10.231 hybrid contribution 0.391 0.160 -0.921 1.013 sum -6.312 -5.899 3.879 9.470 Atomic orbital electron populations 1.21690 0.95150 1.01788 1.02031 1.21917 0.96114 0.97352 1.02493 1.21395 0.78059 0.96646 1.03327 1.48205 1.06101 1.73374 1.07259 1.22061 0.88961 1.01869 0.87987 1.21929 0.98870 0.93189 0.98004 0.85376 1.22479 0.81147 0.89842 0.75111 1.90527 1.42972 1.65199 1.42846 1.86572 1.35703 1.28295 1.73464 1.20056 0.94592 0.74634 0.92791 0.93686 1.21370 1.01224 1.35722 1.00083 0.91216 1.25107 0.96554 0.93362 0.97480 1.69865 1.12093 1.32950 1.34578 0.86496 0.79100 0.78289 0.83666 1.20129 1.20836 1.19576 1.21873 1.04327 1.03553 0.84223 1.24906 0.84027 0.74299 0.86783 1.90619 1.22294 1.39838 1.87488 1.86564 1.51160 1.75124 1.15543 1.22865 0.95729 1.01163 0.81798 1.21773 1.00757 1.02059 0.96088 1.22295 0.95037 1.05134 0.95728 1.20873 0.89224 0.74584 0.84350 1.90679 1.78744 1.50684 1.21114 0.92514 0.92520 0.92554 0.91760 0.91664 0.90226 0.90265 0.88411 0.90333 0.92203 0.84165 0.87881 0.91883 0.91644 0.91749 0.90826 0.91591 0.87027 0.86724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.14 -1.49 6.26 -26.73 -0.17 -1.66 16 3 C 0.13 1.67 5.93 -4.04 -0.02 1.64 16 4 N -0.62 -9.47 2.93 -172.41 -0.51 -9.98 16 5 C 0.11 1.59 6.70 -3.12 -0.02 1.57 16 6 C -0.10 -1.63 3.65 -90.14 -0.33 -1.96 16 7 H 0.13 1.77 8.14 -51.93 -0.42 1.35 16 8 C 0.47 10.47 7.19 36.01 0.26 10.73 16 9 O -0.52 -12.81 14.73 -18.74 -0.28 -13.08 16 10 O -0.33 -7.95 8.42 -44.46 -0.37 -8.33 16 11 C 0.23 5.78 1.64 -27.89 -0.05 5.73 16 12 H 0.05 1.20 6.97 -51.93 -0.36 0.83 16 13 C -0.55 -14.21 8.91 -34.44 -0.31 -14.51 16 14 H 0.07 1.84 7.81 -52.48 -0.41 1.43 16 15 C 0.08 2.05 5.25 -17.82 -0.09 1.96 16 16 N -0.86 -21.65 10.93 55.43 0.61 -21.04 16 17 Si 0.90 19.46 29.54 -169.99 -5.02 14.44 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 C -0.10 -2.28 5.23 -27.88 -0.15 -2.42 16 22 C 0.46 9.77 7.84 36.01 0.28 10.05 16 23 O -0.51 -12.26 15.17 -23.95 -0.36 -12.62 16 24 O -0.37 -6.83 10.22 -39.24 -0.40 -7.23 16 25 C 0.06 0.90 6.19 37.16 0.23 1.13 16 26 C -0.15 -1.69 10.29 37.16 0.38 -1.31 16 27 C -0.14 -2.28 6.40 -26.74 -0.17 -2.45 16 28 C 0.52 9.36 8.02 -10.86 -0.09 9.27 16 29 O -0.54 -11.28 17.60 5.56 0.10 -11.18 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.15 7.93 -51.93 -0.41 0.74 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.10 1.47 6.98 -51.93 -0.36 1.11 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 40 H 0.14 3.31 6.22 -51.93 -0.32 2.99 16 41 H 0.10 2.11 8.14 -51.93 -0.42 1.68 16 42 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 43 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 48 H 0.11 2.14 7.81 -51.93 -0.41 1.73 16 LS Contribution 404.44 15.07 6.09 6.09 Total: -1.00 -32.59 404.44 -7.76 -40.36 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -7.75 Total: 5.73 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: 0.13 Total: 16.85 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.10 Total: -31.02 kcal Atomic # 8 Polarization: -51.13 SS G_CDS: -1.32 Total: -52.45 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.59 -7.76 -40.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870617802.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.010 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds