Wall clock time and date at job start Sat Apr 11 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46991 * 2 1 4 4 N 1.46497 * 109.46961 * 180.02562 * 3 2 1 5 5 C 1.46770 * 124.34952 * 89.99874 * 4 3 2 6 6 C 1.54480 * 105.47236 * 163.00653 * 5 4 3 7 7 H 1.09002 * 110.96791 * 143.53628 * 6 5 4 8 8 C 1.50705 * 110.96789 * 267.26267 * 6 5 4 9 9 O 1.20818 * 120.00168 * 356.91174 * 8 6 5 10 10 O 1.34230 * 119.99756 * 176.91513 * 8 6 5 11 11 C 1.45202 * 116.99779 * 179.97438 * 10 8 6 12 12 H 1.08996 * 109.47104 * 30.00087 * 11 10 8 13 13 C 1.50698 * 109.46750 * 269.99565 * 11 10 8 14 14 H 1.08003 * 119.99953 * 120.00410 * 13 11 10 15 15 C 1.37882 * 120.00159 * 299.99849 * 13 11 10 16 16 N 1.31506 * 119.99998 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99786 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46996 * 90.00228 * 17 15 13 19 19 H 1.48498 * 109.46953 * 210.00124 * 17 15 13 20 20 H 1.48500 * 109.47220 * 329.99905 * 17 15 13 21 21 C 1.52998 * 109.46763 * 149.99859 * 11 10 8 22 22 C 1.50701 * 109.47353 * 294.99695 * 21 11 10 23 23 O 1.20828 * 119.99720 * 0.02562 * 22 21 11 24 24 O 1.34223 * 120.00449 * 180.02562 * 22 21 11 25 25 C 1.45196 * 117.00481 * 179.97438 * 24 22 21 26 26 C 1.52997 * 109.47523 * 179.97438 * 25 24 22 27 27 C 1.54628 * 101.76599 * 25.41755 * 6 5 4 28 28 C 1.34424 * 124.35286 * 270.02678 * 4 3 2 29 29 O 1.21280 * 124.93697 * 0.38752 * 28 4 3 30 30 H 1.09005 * 109.46668 * 300.00012 * 1 2 3 31 31 H 1.08998 * 109.47348 * 59.99083 * 1 2 3 32 32 H 1.08997 * 109.47353 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46429 * 240.00078 * 2 1 3 34 34 H 1.08998 * 109.46956 * 120.00546 * 2 1 3 35 35 H 1.09000 * 109.47118 * 60.00066 * 3 2 1 36 36 H 1.09002 * 109.47250 * 300.00171 * 3 2 1 37 37 H 1.09005 * 110.24126 * 44.00714 * 5 4 3 38 38 H 1.08996 * 110.32088 * 282.04737 * 5 4 3 39 39 H 0.97002 * 120.00384 * 180.02562 * 16 15 13 40 40 H 1.08995 * 109.47892 * 54.99773 * 21 11 10 41 41 H 1.09003 * 109.47138 * 175.00220 * 21 11 10 42 42 H 1.09004 * 109.47358 * 299.99887 * 25 24 22 43 43 H 1.09003 * 109.46878 * 59.99799 * 25 24 22 44 44 H 1.09003 * 109.46895 * 60.00192 * 26 25 24 45 45 H 1.08996 * 109.47657 * 179.97438 * 26 25 24 46 46 H 1.08996 * 109.47269 * 300.00341 * 26 25 24 47 47 H 1.08995 * 110.48559 * 93.88283 * 27 6 5 48 48 H 1.08999 * 110.48739 * 216.52271 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3326 1.4427 -1.2127 6 6 5.7408 1.8777 -0.7501 7 1 6.5148 1.3453 -1.3030 8 6 5.9156 3.3687 -0.8833 9 8 5.0314 4.0404 -1.3596 10 8 7.0535 3.9503 -0.4728 11 6 7.1525 5.3902 -0.6321 12 1 6.1592 5.8329 -0.5595 13 6 7.7463 5.7066 -1.9806 14 1 7.1853 6.2925 -2.6936 15 6 9.0058 5.2482 -2.3040 16 7 9.6888 4.5345 -1.4360 17 14 9.7420 5.6411 -3.9753 18 1 10.4977 6.9169 -3.8958 19 1 10.6599 4.5467 -4.3815 20 1 8.6538 5.7719 -4.9772 21 6 8.0485 5.9644 0.4671 22 6 7.3943 5.7559 1.8086 23 8 6.3216 5.2041 1.8783 24 8 8.0030 6.1831 2.9259 25 6 7.3144 5.9490 4.1826 26 6 8.1557 6.4999 5.3356 27 6 5.7301 1.4516 0.7362 28 6 4.2640 1.4418 1.1088 29 8 3.8356 1.4344 2.2434 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.9378 2.1533 -1.9389 38 1 4.3699 0.4431 -1.6457 39 1 10.5751 4.2123 -1.6633 40 1 9.0135 5.4580 0.4510 41 1 8.1950 7.0310 0.2963 42 1 6.3471 6.4511 4.1659 43 1 7.1656 4.8781 4.3213 44 1 8.3049 7.5708 5.1971 45 1 7.6386 6.3246 6.2789 46 1 9.1229 5.9975 5.3522 47 1 6.1595 0.4563 0.8508 48 1 6.2735 2.1748 1.3444 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870617802.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:11 Heat of formation + Delta-G solvation = -238.500478 kcal Electronic energy + Delta-G solvation = -31468.945726 eV Core-core repulsion = 27102.089554 eV Total energy + Delta-G solvation = -4366.856172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.99952 -41.44786 -40.44318 -38.05070 -37.53439 -36.99682 -35.80079 -35.04395 -32.96049 -32.56473 -31.89507 -28.80345 -28.22276 -27.37668 -25.33859 -24.40221 -23.25830 -22.71862 -21.67374 -21.26509 -20.47896 -19.13084 -18.78050 -18.20290 -17.93527 -17.68482 -17.33732 -17.22828 -16.71136 -16.46775 -16.13393 -16.05468 -15.56771 -15.29743 -14.83563 -14.63893 -14.57058 -14.36803 -13.91717 -13.88745 -13.75283 -13.64272 -13.34414 -13.12805 -12.99022 -12.97030 -12.84125 -12.78860 -12.62859 -12.60626 -12.49236 -12.48032 -12.23838 -12.07898 -11.67083 -11.56931 -11.50729 -11.42011 -11.12218 -10.95095 -10.76033 -10.67598 -9.78815 -8.21510 -6.47984 1.26573 1.42222 1.44367 1.47685 1.55688 1.58651 1.78853 1.96053 2.17405 2.40129 3.09665 3.22828 3.31705 3.72066 3.87085 3.95169 3.96944 4.00393 4.02706 4.10925 4.31534 4.32091 4.37534 4.46268 4.49963 4.50764 4.56244 4.59770 4.64099 4.75712 4.81795 4.85827 4.90835 4.91826 5.06020 5.11429 5.11691 5.17413 5.29195 5.32311 5.48817 5.54007 5.65447 5.94917 6.00063 6.13291 6.59298 6.83469 7.02946 7.18549 7.33755 8.80598 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008417 B = 0.004287 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3325.688574 B = 6530.367129 C = 9188.569294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.120 3.880 4 N -0.613 5.613 5 C 0.118 3.882 6 C -0.094 4.094 7 H 0.163 0.837 8 C 0.456 3.544 9 O -0.556 6.556 10 O -0.338 6.338 11 C 0.233 3.767 12 H 0.013 0.987 13 C -0.575 4.575 14 H 0.053 0.947 15 C 0.053 3.947 16 N -0.872 5.872 17 Si 0.959 3.041 18 H -0.267 1.267 19 H -0.273 1.273 20 H -0.279 1.279 21 C -0.095 4.095 22 C 0.463 3.537 23 O -0.544 6.544 24 O -0.362 6.362 25 C 0.049 3.951 26 C -0.140 4.140 27 C -0.134 4.134 28 C 0.509 3.491 29 O -0.579 6.579 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.132 0.868 39 H 0.274 0.726 40 H 0.132 0.868 41 H 0.117 0.883 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.102 0.898 46 H 0.070 0.930 47 H 0.155 0.845 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.241 -7.540 3.530 9.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C -0.001 4.001 4 N -0.346 5.346 5 C -0.004 4.004 6 C -0.113 4.113 7 H 0.181 0.819 8 C 0.301 3.699 9 O -0.449 6.449 10 O -0.253 6.253 11 C 0.180 3.820 12 H 0.031 0.969 13 C -0.612 4.612 14 H 0.072 0.928 15 C -0.154 4.154 16 N -0.507 5.507 17 Si 0.783 3.217 18 H -0.192 1.192 19 H -0.198 1.198 20 H -0.204 1.204 21 C -0.132 4.132 22 C 0.308 3.692 23 O -0.434 6.434 24 O -0.280 6.280 25 C -0.025 4.025 26 C -0.197 4.197 27 C -0.173 4.173 28 C 0.298 3.702 29 O -0.459 6.459 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.149 0.851 39 H 0.084 0.916 40 H 0.149 0.851 41 H 0.135 0.865 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.120 0.880 46 H 0.089 0.911 47 H 0.173 0.827 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.913 -7.546 4.090 10.423 hybrid contribution 0.096 0.665 -0.643 0.930 sum -5.816 -6.881 3.447 9.647 Atomic orbital electron populations 1.21682 0.93643 1.02798 1.02261 1.21819 0.97320 0.95127 1.02484 1.21608 0.76928 0.98614 1.02961 1.48389 1.07097 1.71936 1.07142 1.22272 0.86857 1.04313 0.86913 1.22115 1.01611 0.88806 0.98783 0.81925 1.23714 0.80035 0.92345 0.73846 1.90498 1.43614 1.66645 1.44139 1.86556 1.37060 1.27806 1.73840 1.19902 0.93226 0.75195 0.93639 0.96872 1.21398 1.02186 1.37079 1.00522 0.92843 1.25654 0.96293 0.92880 1.00530 1.69931 1.12346 1.32673 1.35735 0.85562 0.78086 0.78611 0.79423 1.19184 1.19815 1.20404 1.21695 1.03081 1.04056 0.84397 1.24632 0.83415 0.73725 0.87422 1.90610 1.23561 1.41235 1.88002 1.86539 1.51036 1.74360 1.16019 1.23265 0.96659 1.01231 0.81326 1.21799 1.00483 1.02276 0.95154 1.22284 0.93756 1.06561 0.94744 1.21235 0.90308 0.74366 0.84311 1.90645 1.79534 1.52982 1.22778 0.93229 0.91416 0.91128 0.89972 0.93315 0.92472 0.88779 0.89478 0.85058 0.91631 0.85056 0.86542 0.92024 0.92325 0.90954 0.87981 0.91142 0.82735 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 71.98 0.71 -1.58 16 2 C -0.13 -2.54 6.26 30.60 0.19 -2.34 16 3 C 0.12 3.08 5.93 86.38 0.51 3.59 16 4 N -0.61 -18.37 2.93 -817.97 -2.40 -20.77 16 5 C 0.12 3.04 6.70 86.83 0.58 3.62 16 6 C -0.09 -2.93 3.65 -10.48 -0.04 -2.97 16 7 H 0.16 3.97 8.14 -2.39 -0.02 3.95 16 8 C 0.46 20.66 7.19 71.24 0.51 21.17 16 9 O -0.56 -28.18 14.73 21.99 0.32 -27.86 16 10 O -0.34 -16.98 8.42 -46.45 -0.39 -17.37 16 11 C 0.23 12.13 1.64 29.85 0.05 12.18 16 12 H 0.01 0.75 6.97 -2.39 -0.02 0.73 16 13 C -0.58 -30.70 8.91 25.60 0.23 -30.47 16 14 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 15 C 0.05 2.62 5.25 84.66 0.44 3.07 16 16 N -0.87 -43.60 10.93 21.45 0.23 -43.36 16 17 Si 0.96 39.50 29.54 68.60 2.03 41.53 16 18 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 19 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 20 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 21 C -0.09 -4.36 5.23 29.85 0.16 -4.21 16 22 C 0.46 20.49 7.84 71.24 0.56 21.04 16 23 O -0.54 -27.11 15.17 26.93 0.41 -26.70 16 24 O -0.36 -13.61 10.22 -51.35 -0.52 -14.14 16 25 C 0.05 1.49 6.19 71.98 0.45 1.93 16 26 C -0.14 -2.91 10.29 71.98 0.74 -2.17 16 27 C -0.13 -4.19 6.40 30.59 0.20 -4.00 16 28 C 0.51 18.34 8.02 87.90 0.71 19.05 16 29 O -0.58 -25.19 17.60 -3.03 -0.05 -25.24 16 30 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 1.71 7.93 -2.39 -0.02 1.69 16 36 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.09 2.50 6.98 -2.38 -0.02 2.48 16 38 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.27 12.80 8.31 -92.71 -0.77 12.03 16 40 H 0.13 6.32 6.22 -2.39 -0.01 6.31 16 41 H 0.12 4.90 8.14 -2.39 -0.02 4.88 16 42 H 0.06 1.89 8.13 -2.38 -0.02 1.87 16 43 H 0.06 1.86 8.13 -2.39 -0.02 1.84 16 44 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 45 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.16 3.45 8.14 -2.39 -0.02 3.43 16 48 H 0.08 3.22 7.81 -2.39 -0.02 3.20 16 Total: -1.00 -74.68 404.44 6.57 -68.11 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: 0.95 Total: 27.89 kcal Atomic # 6 Polarization: 31.92 SS G_CDS: 6.00 Total: 37.92 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: -2.16 Total: -64.13 kcal Atomic # 8 Polarization: -111.07 SS G_CDS: -0.24 Total: -111.31 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -74.68 6.57 -68.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870617802.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.393 kcal (2) G-P(sol) polarization free energy of solvation -74.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds