Wall clock time and date at job start Sat Apr 11 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30890 * 125.89130 * 2 1 4 4 C 1.33647 * 109.76954 * 179.97438 * 3 2 1 5 5 N 1.39604 * 125.61339 * 179.97438 * 4 3 2 6 6 C 1.46900 * 111.00161 * 179.97438 * 5 4 3 7 7 C 1.53231 * 109.34036 * 187.25119 * 6 5 4 8 8 N 1.47080 * 108.52257 * 306.17181 * 7 6 5 9 9 C 1.34778 * 120.88311 * 231.18413 * 8 7 6 10 10 O 1.21590 * 120.00196 * 174.67668 * 9 8 7 11 11 C 1.47646 * 119.99884 * 354.67423 * 9 8 7 12 12 C 1.40011 * 119.89418 * 146.85843 * 11 9 8 13 13 C 1.36318 * 120.10643 * 180.02562 * 12 11 9 14 14 C 1.40890 * 119.89360 * 359.97438 * 13 12 11 15 15 C 1.41099 * 120.10569 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00308 * 23.31533 * 15 14 13 17 17 C 1.40227 * 120.00146 * 203.31825 * 15 14 13 18 18 N 1.30651 * 120.00118 * 16.83721 * 17 15 14 19 19 Si 1.86803 * 120.00314 * 196.83712 * 17 15 14 20 20 H 1.48502 * 109.46777 * 89.99928 * 19 17 15 21 21 H 1.48492 * 109.47128 * 209.99889 * 19 17 15 22 22 H 1.48497 * 109.46954 * 330.00352 * 19 17 15 23 23 C 1.40888 * 119.79083 * 0.02562 * 14 13 12 24 24 C 1.36319 * 119.89174 * 359.97438 * 23 14 13 25 25 C 1.47082 * 118.23544 * 51.46029 * 8 7 6 26 26 C 1.46904 * 110.99967 * 304.29993 * 5 4 3 27 27 N 1.31207 * 108.77670 * 0.22624 * 4 3 2 28 28 N 1.34328 * 125.89472 * 179.97438 * 2 1 3 29 29 H 0.97003 * 126.76528 * 359.97438 * 28 2 1 30 30 H 1.08998 * 109.46961 * 90.00153 * 1 2 3 31 31 H 1.08998 * 109.46993 * 209.99986 * 1 2 3 32 32 H 1.09005 * 109.47028 * 329.99986 * 1 2 3 33 33 H 1.09010 * 109.48820 * 67.29405 * 6 5 4 34 34 H 1.08996 * 109.51758 * 307.22936 * 6 5 4 35 35 H 1.09001 * 109.63171 * 186.45906 * 7 6 5 36 36 H 1.08998 * 109.63126 * 65.88410 * 7 6 5 37 37 H 1.08001 * 119.94740 * 0.26997 * 12 11 9 38 38 H 1.08002 * 120.05601 * 180.02562 * 13 12 11 39 39 H 0.96994 * 120.00160 * 180.02562 * 18 17 15 40 40 H 1.07999 * 120.05548 * 179.97438 * 23 14 13 41 41 H 1.08005 * 119.94431 * 179.97438 * 24 23 14 42 42 H 1.08997 * 109.62915 * 68.25104 * 25 8 7 43 43 H 1.09006 * 109.62413 * 188.83426 * 25 8 7 44 44 H 1.09004 * 109.48817 * 292.70874 * 26 5 4 45 45 H 1.09000 * 109.48993 * 52.75804 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2744 1.0604 0.0000 4 6 3.5583 0.6893 0.0006 5 7 4.6544 1.5538 0.0002 6 6 5.9171 0.8031 0.0017 7 6 7.0862 1.7768 0.1837 8 7 6.9865 2.8241 -0.8442 9 6 8.0419 3.1304 -1.6243 10 8 7.9153 3.9292 -2.5323 11 6 9.3519 2.4961 -1.3764 12 6 10.2082 2.2209 -2.4494 13 6 11.4185 1.6349 -2.2255 14 6 11.8074 1.3067 -0.9117 15 6 13.0593 0.7005 -0.6748 16 1 13.8610 0.8200 -1.3886 17 6 13.2628 -0.0572 0.4875 18 7 12.2383 -0.4800 1.1793 19 14 14.9985 -0.4623 1.0466 20 1 15.4874 0.6054 1.9557 21 1 14.9965 -1.7617 1.7652 22 1 15.8913 -0.5522 -0.1366 23 6 10.9423 1.5856 0.1647 24 6 9.7340 2.1718 -0.0690 25 6 5.7062 3.5324 -0.9939 26 6 4.5894 2.4859 -1.1334 27 7 3.6191 -0.6214 -0.0040 28 7 2.2946 -1.0882 0.0005 29 1 2.0055 -2.0141 0.0012 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 6.0275 0.2753 -0.9457 34 1 5.9121 0.0836 0.8204 35 1 8.0292 1.2419 0.0712 36 1 7.0349 2.2295 1.1739 37 1 9.9111 2.4768 -3.4557 38 1 12.0785 1.4233 -3.0537 39 1 12.3790 -1.0038 1.9835 40 1 11.2360 1.3354 1.1735 41 1 9.0700 2.3856 0.7555 42 1 5.5247 4.1506 -0.1148 43 1 5.7364 4.1587 -1.8856 44 1 4.7180 1.9349 -2.0651 45 1 3.6211 2.9865 -1.1376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898179350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:33 Heat of formation + Delta-G solvation = 98.925652 kcal Electronic energy + Delta-G solvation = -28961.616193 eV Core-core repulsion = 24981.286338 eV Total energy + Delta-G solvation = -3980.329855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.34018 -39.88052 -38.00640 -36.98763 -34.61802 -33.89877 -32.67702 -32.13757 -31.40669 -29.92617 -29.47671 -28.34110 -27.19212 -25.66625 -23.78266 -22.70483 -21.57089 -21.17629 -20.77651 -20.38009 -18.72944 -18.15307 -17.51664 -16.80770 -16.11262 -15.82562 -15.56444 -15.30286 -15.07728 -14.93508 -14.46926 -14.21479 -13.98282 -13.65925 -13.41722 -13.27354 -13.12518 -12.88609 -12.55298 -12.32063 -12.05604 -11.97948 -11.80871 -11.58464 -11.33825 -11.27278 -11.21649 -11.05406 -10.93002 -10.72517 -10.59542 -10.15555 -10.04637 -9.89477 -9.54818 -9.30581 -8.95749 -8.62874 -8.20838 -7.66865 -7.53773 -7.00596 -4.59238 1.37716 2.28175 2.33448 2.64720 2.92855 2.96733 2.98895 3.00229 3.18278 3.51491 3.73727 3.77769 4.13453 4.41688 4.50192 4.76248 4.93442 4.98614 4.99883 5.21121 5.30209 5.35342 5.41462 5.42963 5.53714 5.71086 5.77867 5.84752 6.00969 6.03318 6.05184 6.12710 6.19570 6.29046 6.54774 6.78003 6.82826 6.85658 6.91391 6.99693 7.06750 7.15195 7.44308 7.61770 7.82412 7.86663 7.96074 8.04754 8.09753 8.41397 8.65065 8.76220 8.96990 9.89690 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015548 B = 0.002551 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.434329 B =10974.677703 C =12327.465490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.293 3.707 3 N -0.543 5.543 4 C 0.409 3.591 5 N -0.439 5.439 6 C 0.049 3.951 7 C 0.103 3.897 8 N -0.623 5.623 9 C 0.578 3.422 10 O -0.569 6.569 11 C -0.281 4.281 12 C -0.026 4.026 13 C -0.237 4.237 14 C 0.125 3.875 15 C -0.442 4.442 16 H 0.084 0.916 17 C 0.074 3.926 18 N -0.773 5.773 19 Si 0.914 3.086 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.177 4.177 24 C -0.073 4.073 25 C 0.119 3.881 26 C 0.055 3.945 27 N -0.344 5.344 28 N -0.482 5.482 29 H 0.440 0.560 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.126 0.874 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.286 0.714 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.073 0.927 43 H 0.100 0.900 44 H 0.047 0.953 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.958 -3.011 2.275 19.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.013 3.987 3 N -0.275 5.275 4 C 0.039 3.961 5 N -0.163 5.163 6 C -0.079 4.079 7 C -0.020 4.020 8 N -0.357 5.357 9 C 0.374 3.626 10 O -0.450 6.450 11 C -0.285 4.285 12 C -0.046 4.046 13 C -0.256 4.256 14 C 0.122 3.878 15 C -0.469 4.469 16 H 0.102 0.898 17 C -0.147 4.147 18 N -0.397 5.397 19 Si 0.738 3.262 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.197 4.197 24 C -0.092 4.092 25 C -0.004 4.004 26 C -0.073 4.073 27 N -0.179 5.179 28 N -0.202 5.202 29 H 0.285 0.715 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.143 0.857 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.143 0.857 41 H 0.118 0.882 42 H 0.091 0.909 43 H 0.118 0.882 44 H 0.065 0.935 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.477 -2.435 2.415 18.793 hybrid contribution 0.302 -1.464 -0.110 1.499 sum -18.175 -3.899 2.305 18.731 Atomic orbital electron populations 1.20401 0.83575 1.05055 1.04577 1.24296 0.96522 0.82541 0.95297 1.70222 1.00517 1.29366 1.27384 1.22271 0.90213 0.87467 0.96121 1.58948 0.99347 1.15348 1.42661 1.22641 0.86428 0.95836 1.03024 1.22422 0.99161 0.88996 0.91398 1.48067 1.11576 1.38534 1.37564 1.18747 0.83913 0.80402 0.79544 1.90635 1.85255 1.36757 1.32378 1.18830 0.95826 1.18908 0.94963 1.20268 0.93231 0.94750 0.96319 1.20685 0.97490 1.11187 0.96286 1.17786 0.92171 0.87113 0.90735 1.19841 0.98030 1.25161 1.03900 0.89824 1.26088 0.99350 0.93843 0.95430 1.69724 1.32388 1.23993 1.13553 0.86204 0.81733 0.78527 0.79782 1.18951 1.20045 1.18342 1.21087 0.94887 1.03932 0.99762 1.20731 0.96753 0.97474 0.94250 1.21667 0.81631 0.93704 1.03421 1.22675 1.01071 0.93862 0.89682 1.78345 0.96389 1.11155 1.32059 1.47689 1.03988 1.09798 1.58677 0.71498 0.88966 0.89805 0.88269 0.92721 0.88610 0.85680 0.90949 0.88612 0.88464 0.90280 0.85729 0.88154 0.90911 0.88193 0.93494 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.51 36.01 0.38 0.07 16 2 C 0.29 2.76 8.23 -155.73 -1.28 1.48 16 3 N -0.54 -7.20 10.88 -11.13 -0.12 -7.33 16 4 C 0.41 6.03 7.38 -321.18 -2.37 3.66 16 5 N -0.44 -6.48 4.71 -174.44 -0.82 -7.30 16 6 C 0.05 0.73 5.04 -3.70 -0.02 0.71 16 7 C 0.10 1.65 4.86 -3.61 -0.02 1.63 16 8 N -0.62 -11.02 3.00 -173.37 -0.52 -11.54 16 9 C 0.58 12.44 7.41 -12.42 -0.09 12.35 16 10 O -0.57 -13.59 16.22 5.29 0.09 -13.50 16 11 C -0.28 -6.38 5.38 -104.73 -0.56 -6.94 16 12 C -0.03 -0.62 9.53 -39.61 -0.38 -1.00 16 13 C -0.24 -5.70 9.73 -39.27 -0.38 -6.08 16 14 C 0.13 3.16 5.59 -106.81 -0.60 2.56 16 15 C -0.44 -10.92 9.06 -37.75 -0.34 -11.26 16 16 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 17 C 0.07 1.70 5.17 -17.31 -0.09 1.62 16 18 N -0.77 -18.21 10.80 55.56 0.60 -17.61 16 19 Si 0.91 17.28 29.59 -169.99 -5.03 12.24 16 20 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 21 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 22 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 23 C -0.18 -4.29 8.65 -39.27 -0.34 -4.63 16 24 C -0.07 -1.61 7.30 -39.61 -0.29 -1.90 16 25 C 0.12 1.79 6.64 -3.37 -0.02 1.76 16 26 C 0.05 0.77 5.57 -3.47 -0.02 0.75 16 27 N -0.34 -4.85 11.75 29.99 0.35 -4.50 16 28 N -0.48 -4.65 7.43 32.61 0.24 -4.41 16 29 H 0.44 2.50 8.96 -182.34 -1.63 0.86 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 34 H 0.10 1.39 7.86 -51.93 -0.41 0.98 16 35 H 0.13 2.23 4.50 -51.93 -0.23 1.99 16 36 H 0.07 1.07 7.96 -51.93 -0.41 0.65 16 37 H 0.10 2.15 7.96 -52.49 -0.42 1.73 16 38 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.29 6.08 8.29 -40.82 -0.34 5.74 16 40 H 0.13 3.06 6.01 -52.49 -0.32 2.74 16 41 H 0.10 1.94 5.72 -52.48 -0.30 1.64 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.10 1.56 7.04 -51.93 -0.37 1.19 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.10 1.26 7.83 -51.93 -0.41 0.86 16 LS Contribution 368.70 15.07 5.56 5.56 Total: -1.00 -31.69 368.70 -13.09 -44.77 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -7.00 Total: 8.83 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -6.43 Total: -5.21 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.27 Total: -52.69 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.50 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.24 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.69 -13.09 -44.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898179350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.699 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds