Wall clock time and date at job start Sat Apr 11 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30890 * 125.89130 * 2 1 4 4 C 1.33647 * 109.76954 * 179.97438 * 3 2 1 5 5 N 1.39604 * 125.61339 * 179.97438 * 4 3 2 6 6 C 1.46900 * 111.00161 * 179.97438 * 5 4 3 7 7 C 1.53231 * 109.34036 * 187.25119 * 6 5 4 8 8 N 1.47080 * 108.52257 * 306.17181 * 7 6 5 9 9 C 1.34778 * 120.88311 * 231.18413 * 8 7 6 10 10 O 1.21590 * 120.00196 * 174.67668 * 9 8 7 11 11 C 1.47646 * 119.99884 * 354.67423 * 9 8 7 12 12 C 1.40011 * 119.89418 * 146.85843 * 11 9 8 13 13 C 1.36318 * 120.10643 * 180.02562 * 12 11 9 14 14 C 1.40890 * 119.89360 * 359.97438 * 13 12 11 15 15 C 1.41099 * 120.10569 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00308 * 23.31533 * 15 14 13 17 17 C 1.40227 * 120.00146 * 203.31825 * 15 14 13 18 18 N 1.30651 * 120.00118 * 16.83721 * 17 15 14 19 19 Si 1.86803 * 120.00314 * 196.83712 * 17 15 14 20 20 H 1.48502 * 109.46777 * 89.99928 * 19 17 15 21 21 H 1.48492 * 109.47128 * 209.99889 * 19 17 15 22 22 H 1.48497 * 109.46954 * 330.00352 * 19 17 15 23 23 C 1.40888 * 119.79083 * 0.02562 * 14 13 12 24 24 C 1.36319 * 119.89174 * 359.97438 * 23 14 13 25 25 C 1.47082 * 118.23544 * 51.46029 * 8 7 6 26 26 C 1.46904 * 110.99967 * 304.29993 * 5 4 3 27 27 N 1.31207 * 108.77670 * 0.22624 * 4 3 2 28 28 N 1.34328 * 125.89472 * 179.97438 * 2 1 3 29 29 H 0.97003 * 126.76528 * 359.97438 * 28 2 1 30 30 H 1.08998 * 109.46961 * 90.00153 * 1 2 3 31 31 H 1.08998 * 109.46993 * 209.99986 * 1 2 3 32 32 H 1.09005 * 109.47028 * 329.99986 * 1 2 3 33 33 H 1.09010 * 109.48820 * 67.29405 * 6 5 4 34 34 H 1.08996 * 109.51758 * 307.22936 * 6 5 4 35 35 H 1.09001 * 109.63171 * 186.45906 * 7 6 5 36 36 H 1.08998 * 109.63126 * 65.88410 * 7 6 5 37 37 H 1.08001 * 119.94740 * 0.26997 * 12 11 9 38 38 H 1.08002 * 120.05601 * 180.02562 * 13 12 11 39 39 H 0.96994 * 120.00160 * 180.02562 * 18 17 15 40 40 H 1.07999 * 120.05548 * 179.97438 * 23 14 13 41 41 H 1.08005 * 119.94431 * 179.97438 * 24 23 14 42 42 H 1.08997 * 109.62915 * 68.25104 * 25 8 7 43 43 H 1.09006 * 109.62413 * 188.83426 * 25 8 7 44 44 H 1.09004 * 109.48817 * 292.70874 * 26 5 4 45 45 H 1.09000 * 109.48993 * 52.75804 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2744 1.0604 0.0000 4 6 3.5583 0.6893 0.0006 5 7 4.6544 1.5538 0.0002 6 6 5.9171 0.8031 0.0017 7 6 7.0862 1.7768 0.1837 8 7 6.9865 2.8241 -0.8442 9 6 8.0419 3.1304 -1.6243 10 8 7.9153 3.9292 -2.5323 11 6 9.3519 2.4961 -1.3764 12 6 10.2082 2.2209 -2.4494 13 6 11.4185 1.6349 -2.2255 14 6 11.8074 1.3067 -0.9117 15 6 13.0593 0.7005 -0.6748 16 1 13.8610 0.8200 -1.3886 17 6 13.2628 -0.0572 0.4875 18 7 12.2383 -0.4800 1.1793 19 14 14.9985 -0.4623 1.0466 20 1 15.4874 0.6054 1.9557 21 1 14.9965 -1.7617 1.7652 22 1 15.8913 -0.5522 -0.1366 23 6 10.9423 1.5856 0.1647 24 6 9.7340 2.1718 -0.0690 25 6 5.7062 3.5324 -0.9939 26 6 4.5894 2.4859 -1.1334 27 7 3.6191 -0.6214 -0.0040 28 7 2.2946 -1.0882 0.0005 29 1 2.0055 -2.0141 0.0012 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 6.0275 0.2753 -0.9457 34 1 5.9121 0.0836 0.8204 35 1 8.0292 1.2419 0.0712 36 1 7.0349 2.2295 1.1739 37 1 9.9111 2.4768 -3.4557 38 1 12.0785 1.4233 -3.0537 39 1 12.3790 -1.0038 1.9835 40 1 11.2360 1.3354 1.1735 41 1 9.0700 2.3856 0.7555 42 1 5.5247 4.1506 -0.1148 43 1 5.7364 4.1587 -1.8856 44 1 4.7180 1.9349 -2.0651 45 1 3.6211 2.9865 -1.1376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898179350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:32 Heat of formation + Delta-G solvation = 80.890378 kcal Electronic energy + Delta-G solvation = -28962.398261 eV Core-core repulsion = 24981.286338 eV Total energy + Delta-G solvation = -3981.111923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.23581 -41.38687 -39.48374 -38.68928 -36.01452 -35.63115 -33.52103 -33.16205 -32.65102 -31.58214 -31.30091 -29.17667 -28.48498 -27.30158 -25.04531 -24.15854 -22.90258 -22.73079 -22.02341 -21.59055 -20.20819 -19.34447 -19.02721 -18.23954 -17.44022 -17.10906 -16.96322 -16.71043 -16.37333 -16.14745 -15.88246 -15.52412 -15.34442 -14.98080 -14.80206 -14.52977 -14.20369 -14.01403 -13.70931 -13.68631 -13.60381 -13.27556 -13.18174 -12.84208 -12.81193 -12.71618 -12.56098 -12.52299 -12.40233 -12.27088 -11.76691 -11.69956 -11.32592 -11.10017 -11.07159 -10.80683 -10.68461 -9.85546 -9.55506 -9.49998 -9.37058 -8.75439 -6.46100 0.50324 0.53304 1.13972 1.39644 1.44262 1.48464 1.53564 1.76956 1.96852 2.06345 2.17895 2.33178 2.73561 3.38966 3.51330 3.66640 3.70401 3.75638 4.00042 4.03406 4.17187 4.24853 4.31054 4.38105 4.42362 4.56630 4.62155 4.70488 4.72802 4.74659 4.86410 4.89142 4.95904 5.03997 5.10894 5.13488 5.17958 5.31069 5.42887 5.55388 5.61617 5.80937 5.92048 5.99341 6.01261 6.22751 6.23650 6.43885 6.56525 6.79970 6.90626 7.05912 7.29339 8.17863 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015548 B = 0.002551 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.434329 B =10974.677703 C =12327.465490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.304 3.696 3 N -0.574 5.574 4 C 0.392 3.608 5 N -0.441 5.441 6 C 0.062 3.938 7 C 0.106 3.894 8 N -0.616 5.616 9 C 0.577 3.423 10 O -0.598 6.598 11 C -0.289 4.289 12 C -0.036 4.036 13 C -0.251 4.251 14 C 0.099 3.901 15 C -0.472 4.472 16 H 0.083 0.917 17 C 0.038 3.962 18 N -0.796 5.796 19 Si 0.986 3.014 20 H -0.260 1.260 21 H -0.264 1.264 22 H -0.259 1.259 23 C -0.196 4.196 24 C -0.059 4.059 25 C 0.120 3.880 26 C 0.067 3.933 27 N -0.377 5.377 28 N -0.472 5.472 29 H 0.456 0.544 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.036 0.964 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.297 0.703 40 H 0.119 0.881 41 H 0.127 0.873 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.032 0.968 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.817 -3.706 3.685 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.026 3.974 3 N -0.307 5.307 4 C 0.022 3.978 5 N -0.165 5.165 6 C -0.067 4.067 7 C -0.016 4.016 8 N -0.348 5.348 9 C 0.372 3.628 10 O -0.482 6.482 11 C -0.293 4.293 12 C -0.055 4.055 13 C -0.271 4.271 14 C 0.096 3.904 15 C -0.499 4.499 16 H 0.101 0.899 17 C -0.181 4.181 18 N -0.419 5.419 19 Si 0.806 3.194 20 H -0.185 1.185 21 H -0.189 1.189 22 H -0.183 1.183 23 C -0.215 4.215 24 C -0.078 4.078 25 C -0.002 4.002 26 C -0.061 4.061 27 N -0.213 5.213 28 N -0.193 5.193 29 H 0.305 0.695 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.121 0.879 33 H 0.055 0.945 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.108 0.892 40 H 0.136 0.864 41 H 0.145 0.855 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.050 0.950 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -20.402 -3.170 3.842 21.002 hybrid contribution 0.664 -1.316 -0.549 1.573 sum -19.738 -4.486 3.294 20.508 Atomic orbital electron populations 1.20691 0.79540 1.06790 1.06217 1.25251 0.98276 0.81404 0.92514 1.70223 1.00143 1.31227 1.29104 1.22325 0.90690 0.87696 0.97092 1.58919 0.99277 1.15564 1.42747 1.22429 0.86539 0.95416 1.02287 1.22420 0.98797 0.88683 0.91727 1.48058 1.11614 1.38389 1.36775 1.18559 0.84352 0.80120 0.79775 1.90614 1.85762 1.38119 1.33672 1.19071 0.96608 1.18574 0.95071 1.20421 0.93330 0.94856 0.96933 1.20812 0.98020 1.11881 0.96360 1.18130 0.93030 0.87867 0.91414 1.20084 0.98069 1.26416 1.05351 0.89913 1.26886 1.03362 0.93081 0.94791 1.69741 1.34341 1.23924 1.13927 0.85125 0.76403 0.78640 0.79196 1.18468 1.18879 1.18279 1.21096 0.95836 1.05337 0.99251 1.20908 0.96186 0.95907 0.94791 1.21836 0.80366 0.93904 1.04110 1.22558 1.01227 0.93370 0.88965 1.78217 0.99123 1.11158 1.32780 1.47614 1.02640 1.10967 1.58068 0.69461 0.87140 0.86662 0.87893 0.94530 0.88036 0.87515 0.88860 0.88243 0.87894 0.89220 0.86360 0.85518 0.88847 0.88781 0.94997 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.51 71.24 0.75 0.42 16 2 C 0.30 5.02 8.23 138.24 1.14 6.15 16 3 N -0.57 -14.33 10.88 -189.12 -2.06 -16.38 16 4 C 0.39 11.20 7.38 260.92 1.93 13.12 16 5 N -0.44 -12.63 4.71 -705.81 -3.33 -15.96 16 6 C 0.06 1.83 5.04 86.38 0.44 2.27 16 7 C 0.11 3.32 4.86 86.35 0.42 3.74 16 8 N -0.62 -21.46 3.00 -820.70 -2.46 -23.93 16 9 C 0.58 24.96 7.41 86.73 0.64 25.60 16 10 O -0.60 -28.84 16.22 -4.00 -0.06 -28.91 16 11 C -0.29 -13.32 5.38 -19.93 -0.11 -13.43 16 12 C -0.04 -1.75 9.53 22.25 0.21 -1.54 16 13 C -0.25 -12.51 9.73 22.47 0.22 -12.29 16 14 C 0.10 5.14 5.59 -21.28 -0.12 5.02 16 15 C -0.47 -23.88 9.06 23.46 0.21 -23.66 16 16 H 0.08 4.04 7.90 -2.91 -0.02 4.02 16 17 C 0.04 1.75 5.17 85.35 0.44 2.19 16 18 N -0.80 -37.62 10.80 21.87 0.24 -37.38 16 19 Si 0.99 34.99 29.59 68.60 2.03 37.02 16 20 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 21 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 22 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 23 C -0.20 -9.67 8.65 22.47 0.19 -9.48 16 24 C -0.06 -2.63 7.30 22.25 0.16 -2.46 16 25 C 0.12 3.48 6.64 86.50 0.57 4.05 16 26 C 0.07 1.81 5.57 86.53 0.48 2.29 16 27 N -0.38 -10.29 11.75 -59.03 -0.69 -10.99 16 28 N -0.47 -8.20 7.43 -50.73 -0.38 -8.58 16 29 H 0.46 4.15 8.96 -213.10 -1.91 2.24 16 30 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.10 2.91 7.86 -2.39 -0.02 2.89 16 35 H 0.11 3.79 4.50 -2.39 -0.01 3.78 16 36 H 0.09 2.57 7.96 -2.39 -0.02 2.55 16 37 H 0.10 4.62 7.96 -2.91 -0.02 4.60 16 38 H 0.10 4.83 8.06 -2.91 -0.02 4.80 16 39 H 0.30 12.46 8.29 -92.71 -0.77 11.69 16 40 H 0.12 5.93 6.01 -2.91 -0.02 5.91 16 41 H 0.13 4.82 5.72 -2.91 -0.02 4.80 16 42 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.09 2.88 7.04 -2.38 -0.02 2.86 16 44 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 45 H 0.11 2.77 7.83 -2.39 -0.02 2.75 16 Total: -1.00 -70.13 368.70 0.00 -70.12 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: -0.86 Total: 33.00 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 7.58 Total: 1.99 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -8.68 Total: -113.22 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.06 Total: -28.91 kcal Atomic # 14 Polarization: 34.99 SS G_CDS: 2.03 Total: 37.02 kcal Total: -70.13 0.00 -70.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898179350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.015 kcal (2) G-P(sol) polarization free energy of solvation -70.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds