Wall clock time and date at job start Sat Apr 11 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 119.99652 * 2 1 4 4 C 1.39163 * 120.00172 * 179.97438 * 2 1 3 5 5 C 1.39494 * 120.86585 * 179.72099 * 4 2 1 6 6 C 1.37879 * 119.06805 * 179.75489 * 5 4 2 7 7 N 1.32001 * 120.84299 * 0.52647 * 6 5 4 8 8 C 1.31979 * 121.91101 * 359.72824 * 7 6 5 9 9 C 1.50699 * 119.58252 * 179.97438 * 8 7 6 10 10 N 1.46494 * 109.47238 * 275.02110 * 9 8 7 11 11 S 1.65606 * 120.00178 * 164.99709 * 10 9 8 12 12 O 1.42094 * 104.27551 * 181.06963 * 11 10 9 13 13 O 1.42096 * 104.27415 * 308.92950 * 11 10 9 14 14 C 1.81399 * 104.44702 * 64.99884 * 11 10 9 15 15 C 1.53001 * 109.46873 * 179.97438 * 14 11 10 16 16 C 1.52998 * 109.47418 * 300.00042 * 15 14 11 17 17 C 1.52998 * 109.47240 * 60.00169 * 15 14 11 18 18 C 1.50705 * 109.47119 * 179.97438 * 15 14 11 19 19 H 1.08003 * 120.00121 * 357.70086 * 18 15 14 20 20 C 1.37878 * 120.00114 * 177.69477 * 18 15 14 21 21 N 1.31517 * 119.99655 * 6.58399 * 20 18 15 22 22 Si 1.86801 * 119.99896 * 186.58607 * 20 18 15 23 23 H 1.48496 * 109.47162 * 84.99834 * 22 20 18 24 24 H 1.48506 * 109.46627 * 204.99417 * 22 20 18 25 25 H 1.48494 * 109.47220 * 324.99236 * 22 20 18 26 26 C 1.37918 * 120.84217 * 0.02562 * 8 7 6 27 27 H 1.09001 * 109.47013 * 270.00013 * 1 2 3 28 28 H 1.09000 * 109.46787 * 150.00154 * 1 2 3 29 29 H 1.08999 * 109.47399 * 29.99947 * 1 2 3 30 30 H 1.08997 * 109.47557 * 90.00377 * 3 2 1 31 31 H 1.09010 * 109.46687 * 210.00017 * 3 2 1 32 32 H 1.09000 * 109.47265 * 329.99628 * 3 2 1 33 33 H 1.07999 * 120.46816 * 359.97438 * 5 4 2 34 34 H 1.08002 * 119.57814 * 180.25135 * 6 5 4 35 35 H 1.09001 * 109.47200 * 35.01960 * 9 8 7 36 36 H 1.09001 * 109.47276 * 155.01530 * 9 8 7 37 37 H 0.96997 * 120.00324 * 344.99389 * 10 9 8 38 38 H 1.09001 * 109.47484 * 299.99802 * 14 11 10 39 39 H 1.08999 * 109.47533 * 60.00415 * 14 11 10 40 40 H 1.08996 * 109.46742 * 66.66618 * 16 15 14 41 41 H 1.09002 * 109.46935 * 186.67337 * 16 15 14 42 42 H 1.09000 * 109.46830 * 306.67070 * 16 15 14 43 43 H 1.09005 * 109.47405 * 59.99437 * 17 15 14 44 44 H 1.08996 * 109.47589 * 179.97438 * 17 15 14 45 45 H 1.08996 * 109.47032 * 300.00042 * 17 15 14 46 46 H 0.97003 * 119.99582 * 179.97438 * 21 20 18 47 47 H 1.08005 * 120.46740 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1609 -1.2052 0.0005 5 6 3.5557 -1.2262 -0.0053 6 6 4.2073 -2.4413 0.0006 7 7 3.5284 -3.5733 0.0012 8 6 2.2088 -3.5954 0.0016 9 6 1.4869 -4.9182 0.0017 10 7 1.3587 -5.4047 -1.3742 11 16 0.9499 -6.9840 -1.6594 12 8 0.9454 -7.0944 -3.0760 13 8 1.8646 -7.7309 -0.8692 14 6 -0.7340 -7.1411 -1.0033 15 6 -1.2304 -8.5735 -1.2104 16 6 -1.2326 -8.9015 -2.7048 17 6 -0.3043 -9.5453 -0.4764 18 6 -2.6291 -8.7043 -0.6648 19 1 -3.1014 -7.8615 -0.1820 20 6 -3.3058 -9.8998 -0.7821 21 7 -2.6881 -10.9617 -1.2516 22 14 -5.1000 -10.0111 -0.2740 23 1 -5.9618 -9.5761 -1.4023 24 1 -5.4263 -11.4145 0.0856 25 1 -5.3380 -9.1315 0.8984 26 6 1.4820 -2.4233 0.0008 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 -0.8900 -0.5138 29 1 -0.3634 0.8900 -0.5138 30 1 2.3792 1.5835 1.0276 31 1 3.1500 1.1384 -0.5139 32 1 1.6084 2.0284 -0.5139 33 1 4.1172 -0.3037 -0.0107 34 1 5.2870 -2.4672 0.0003 35 1 2.0517 -5.6404 0.5912 36 1 0.4953 -4.7910 0.4360 37 1 1.5132 -4.8019 -2.1182 38 1 -0.7325 -6.9071 0.0613 39 1 -1.3939 -6.4492 -1.5266 40 1 -0.2071 -8.9230 -3.0736 41 1 -1.6960 -9.8754 -2.8623 42 1 -1.7964 -8.1396 -3.2431 43 1 -0.3026 -9.3117 0.5883 44 1 -0.6581 -10.5657 -0.6235 45 1 0.7075 -9.4509 -0.8706 46 1 -3.1642 -11.8029 -1.3337 47 1 0.4022 -2.4484 0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921018334.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:15 Heat of formation + Delta-G solvation = -24.708423 kcal Electronic energy + Delta-G solvation = -27975.542149 eV Core-core repulsion = 24093.002319 eV Total energy + Delta-G solvation = -3882.539831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.57835 -37.46125 -36.46397 -36.23653 -35.33248 -35.08669 -31.65640 -31.48335 -31.37633 -28.83293 -26.61176 -26.29791 -25.68055 -25.34158 -25.18307 -22.86597 -21.00333 -19.58599 -18.72073 -17.87847 -17.17797 -16.95058 -16.19179 -15.87311 -15.60143 -15.51911 -15.27901 -14.82778 -14.73880 -14.53482 -14.33110 -13.80775 -13.51228 -13.30328 -13.07746 -12.98328 -12.91591 -12.58504 -12.47542 -12.42856 -11.95589 -11.83533 -11.40246 -11.33591 -11.13129 -11.00818 -10.91752 -10.84176 -10.67070 -10.36219 -10.26930 -10.07046 -9.63703 -9.59223 -9.50287 -9.28638 -9.19395 -8.66834 -8.35921 -8.01527 -6.02070 -4.13558 0.77797 1.08496 1.34554 2.60310 3.26009 3.27074 3.34146 3.35359 3.79636 4.09846 4.35375 4.40102 4.44467 4.47287 4.77799 4.79253 4.81941 4.88590 5.03660 5.06792 5.11862 5.19974 5.22712 5.27916 5.35490 5.43296 5.57733 5.68312 5.71887 5.74340 5.87573 5.99148 6.40258 6.42003 6.70848 6.72170 6.82409 6.93859 6.95434 7.07108 7.17120 7.34988 7.52298 7.69695 8.00843 8.02191 8.12855 8.36078 8.84704 9.51385 10.99019 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016253 B = 0.002714 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.378235 B =10313.128250 C =11432.635327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.629 5.629 3 C 0.091 3.909 4 C 0.247 3.753 5 C -0.251 4.251 6 C 0.140 3.860 7 N -0.508 5.508 8 C 0.162 3.838 9 C 0.167 3.833 10 N -1.123 6.123 11 S 2.595 3.405 12 O -0.964 6.964 13 O -0.960 6.960 14 C -0.583 4.583 15 C 0.082 3.918 16 C -0.161 4.161 17 C -0.165 4.165 18 C -0.502 4.502 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.882 5.882 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.275 1.275 26 C -0.235 4.235 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.132 0.868 34 H 0.155 0.845 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.411 0.589 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.027 0.973 41 H 0.094 0.906 42 H 0.035 0.965 43 H 0.036 0.964 44 H 0.097 0.903 45 H 0.028 0.972 46 H 0.262 0.738 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.240 24.033 3.213 25.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.340 5.340 3 C -0.052 4.052 4 C 0.136 3.864 5 C -0.277 4.277 6 C -0.017 4.017 7 N -0.220 5.220 8 C 0.024 3.976 9 C 0.040 3.960 10 N -0.879 5.879 11 S 2.692 3.308 12 O -0.955 6.955 13 O -0.949 6.949 14 C -0.717 4.717 15 C 0.080 3.920 16 C -0.219 4.219 17 C -0.222 4.222 18 C -0.541 4.541 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.520 5.520 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.260 4.260 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.149 0.851 34 H 0.172 0.828 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.244 0.756 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.045 0.955 41 H 0.112 0.888 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.115 0.885 45 H 0.047 0.953 46 H 0.073 0.927 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.114 22.468 2.918 24.421 hybrid contribution -1.977 1.582 0.298 2.549 sum 7.137 24.050 3.216 25.292 Atomic orbital electron populations 1.21752 0.78827 1.03185 1.01715 1.46279 1.05472 1.03094 1.79126 1.21706 0.97386 0.84619 1.01480 1.18024 0.91392 0.86005 0.90950 1.21668 0.92672 1.00320 1.12996 1.22509 1.00096 0.86806 0.92263 1.67582 1.08218 1.30317 1.15912 1.20857 0.89704 0.93929 0.93127 1.20089 0.99219 0.92687 0.84006 1.55805 1.87814 1.32112 1.12175 1.05613 0.78465 0.71855 0.74821 1.93555 1.88107 1.84352 1.29470 1.93548 1.60993 1.68596 1.71803 1.30555 1.19681 1.10064 1.11387 1.17926 0.96352 0.83948 0.93795 1.22214 0.99074 1.04517 0.96106 1.22314 0.96002 1.05016 0.98916 1.20936 0.97649 0.97529 1.38029 0.92297 1.24942 0.98152 0.95552 0.95110 1.69819 1.35831 1.00527 1.45804 0.86568 0.85127 0.77215 0.78813 1.20596 1.21220 1.20027 1.21522 1.01259 0.91153 1.12108 0.92873 0.90818 0.91185 0.93061 0.91123 0.91225 0.85059 0.82769 0.88298 0.90243 0.75615 0.86398 0.86251 0.95451 0.88775 0.94602 0.94455 0.88451 0.95345 0.92726 0.84555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.26 59.85 0.61 1.11 16 2 N -0.63 -4.63 3.39 -187.34 -0.64 -5.27 16 3 C 0.09 0.43 10.27 59.85 0.61 1.05 16 4 C 0.25 2.36 6.58 -83.61 -0.55 1.81 16 5 C -0.25 -2.26 9.27 -39.24 -0.36 -2.62 16 6 C 0.14 1.46 11.17 -17.61 -0.20 1.26 16 7 N -0.51 -6.81 10.27 -9.57 -0.10 -6.91 16 8 C 0.16 2.03 6.17 -82.65 -0.51 1.52 16 9 C 0.17 2.18 6.44 -5.20 -0.03 2.14 16 10 N -1.12 -16.40 5.88 -11.66 -0.07 -16.46 16 11 S 2.59 49.22 4.49 -107.50 -0.48 48.74 16 12 O -0.96 -20.77 15.84 -57.54 -0.91 -21.68 16 13 O -0.96 -20.85 15.12 -57.54 -0.87 -21.72 16 14 C -0.58 -11.25 5.01 37.16 0.19 -11.07 16 15 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 16 C -0.16 -4.00 7.58 37.16 0.28 -3.71 16 17 C -0.16 -4.09 7.79 37.16 0.29 -3.80 16 18 C -0.50 -13.11 8.01 -34.44 -0.28 -13.39 16 19 H 0.06 1.49 7.75 -52.48 -0.41 1.08 16 20 C 0.06 1.71 5.09 -17.82 -0.09 1.62 16 21 N -0.88 -24.12 9.39 55.43 0.52 -23.60 16 22 Si 0.89 20.55 29.54 -169.99 -5.02 15.52 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 C -0.23 -2.46 8.87 -39.25 -0.35 -2.81 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.43 6.26 -51.93 -0.33 0.11 16 29 H 0.07 0.28 7.89 -51.93 -0.41 -0.13 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.30 6.25 -51.92 -0.32 -0.02 16 32 H 0.07 0.23 7.89 -51.93 -0.41 -0.18 16 33 H 0.13 0.84 6.27 -52.49 -0.33 0.52 16 34 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 35 H 0.10 1.40 7.69 -51.93 -0.40 1.00 16 36 H 0.08 0.81 8.04 -51.93 -0.42 0.40 16 37 H 0.41 5.44 8.61 -34.47 -0.30 5.14 16 38 H 0.12 2.01 8.14 -51.92 -0.42 1.59 16 39 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 40 H 0.03 0.65 5.96 -51.93 -0.31 0.34 16 41 H 0.09 2.51 5.99 -51.93 -0.31 2.19 16 42 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.10 2.61 6.01 -51.93 -0.31 2.30 16 45 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 46 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 47 H 0.14 1.19 6.28 -52.48 -0.33 0.86 16 LS Contribution 379.84 15.07 5.72 5.72 Total: -1.00 -34.33 379.84 -9.27 -43.60 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.96 Total: 7.04 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -0.46 Total: -24.97 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.28 Total: -52.25 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -1.78 Total: -43.40 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 49.22 SS G_CDS: -0.48 Total: 48.74 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.33 -9.27 -43.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921018334.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.887 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds