Wall clock time and date at job start Sat Apr 11 2020 06:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 119.99652 * 2 1 4 4 C 1.39163 * 120.00172 * 179.97438 * 2 1 3 5 5 C 1.39494 * 120.86585 * 179.72099 * 4 2 1 6 6 C 1.37879 * 119.06805 * 179.75489 * 5 4 2 7 7 N 1.32001 * 120.84299 * 0.52647 * 6 5 4 8 8 C 1.31979 * 121.91101 * 359.72824 * 7 6 5 9 9 C 1.50699 * 119.58252 * 179.97438 * 8 7 6 10 10 N 1.46494 * 109.47238 * 275.02110 * 9 8 7 11 11 S 1.65606 * 120.00178 * 164.99709 * 10 9 8 12 12 O 1.42094 * 104.27551 * 181.06963 * 11 10 9 13 13 O 1.42096 * 104.27415 * 308.92950 * 11 10 9 14 14 C 1.81399 * 104.44702 * 64.99884 * 11 10 9 15 15 C 1.53001 * 109.46873 * 179.97438 * 14 11 10 16 16 C 1.52998 * 109.47418 * 300.00042 * 15 14 11 17 17 C 1.52998 * 109.47240 * 60.00169 * 15 14 11 18 18 C 1.50705 * 109.47119 * 179.97438 * 15 14 11 19 19 H 1.08003 * 120.00121 * 357.70086 * 18 15 14 20 20 C 1.37878 * 120.00114 * 177.69477 * 18 15 14 21 21 N 1.31517 * 119.99655 * 6.58399 * 20 18 15 22 22 Si 1.86801 * 119.99896 * 186.58607 * 20 18 15 23 23 H 1.48496 * 109.47162 * 84.99834 * 22 20 18 24 24 H 1.48506 * 109.46627 * 204.99417 * 22 20 18 25 25 H 1.48494 * 109.47220 * 324.99236 * 22 20 18 26 26 C 1.37918 * 120.84217 * 0.02562 * 8 7 6 27 27 H 1.09001 * 109.47013 * 270.00013 * 1 2 3 28 28 H 1.09000 * 109.46787 * 150.00154 * 1 2 3 29 29 H 1.08999 * 109.47399 * 29.99947 * 1 2 3 30 30 H 1.08997 * 109.47557 * 90.00377 * 3 2 1 31 31 H 1.09010 * 109.46687 * 210.00017 * 3 2 1 32 32 H 1.09000 * 109.47265 * 329.99628 * 3 2 1 33 33 H 1.07999 * 120.46816 * 359.97438 * 5 4 2 34 34 H 1.08002 * 119.57814 * 180.25135 * 6 5 4 35 35 H 1.09001 * 109.47200 * 35.01960 * 9 8 7 36 36 H 1.09001 * 109.47276 * 155.01530 * 9 8 7 37 37 H 0.96997 * 120.00324 * 344.99389 * 10 9 8 38 38 H 1.09001 * 109.47484 * 299.99802 * 14 11 10 39 39 H 1.08999 * 109.47533 * 60.00415 * 14 11 10 40 40 H 1.08996 * 109.46742 * 66.66618 * 16 15 14 41 41 H 1.09002 * 109.46935 * 186.67337 * 16 15 14 42 42 H 1.09000 * 109.46830 * 306.67070 * 16 15 14 43 43 H 1.09005 * 109.47405 * 59.99437 * 17 15 14 44 44 H 1.08996 * 109.47589 * 179.97438 * 17 15 14 45 45 H 1.08996 * 109.47032 * 300.00042 * 17 15 14 46 46 H 0.97003 * 119.99582 * 179.97438 * 21 20 18 47 47 H 1.08005 * 120.46740 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1609 -1.2052 0.0005 5 6 3.5557 -1.2262 -0.0053 6 6 4.2073 -2.4413 0.0006 7 7 3.5284 -3.5733 0.0012 8 6 2.2088 -3.5954 0.0016 9 6 1.4869 -4.9182 0.0017 10 7 1.3587 -5.4047 -1.3742 11 16 0.9499 -6.9840 -1.6594 12 8 0.9454 -7.0944 -3.0760 13 8 1.8646 -7.7309 -0.8692 14 6 -0.7340 -7.1411 -1.0033 15 6 -1.2304 -8.5735 -1.2104 16 6 -1.2326 -8.9015 -2.7048 17 6 -0.3043 -9.5453 -0.4764 18 6 -2.6291 -8.7043 -0.6648 19 1 -3.1014 -7.8615 -0.1820 20 6 -3.3058 -9.8998 -0.7821 21 7 -2.6881 -10.9617 -1.2516 22 14 -5.1000 -10.0111 -0.2740 23 1 -5.9618 -9.5761 -1.4023 24 1 -5.4263 -11.4145 0.0856 25 1 -5.3380 -9.1315 0.8984 26 6 1.4820 -2.4233 0.0008 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 -0.8900 -0.5138 29 1 -0.3634 0.8900 -0.5138 30 1 2.3792 1.5835 1.0276 31 1 3.1500 1.1384 -0.5139 32 1 1.6084 2.0284 -0.5139 33 1 4.1172 -0.3037 -0.0107 34 1 5.2870 -2.4672 0.0003 35 1 2.0517 -5.6404 0.5912 36 1 0.4953 -4.7910 0.4360 37 1 1.5132 -4.8019 -2.1182 38 1 -0.7325 -6.9071 0.0613 39 1 -1.3939 -6.4492 -1.5266 40 1 -0.2071 -8.9230 -3.0736 41 1 -1.6960 -9.8754 -2.8623 42 1 -1.7964 -8.1396 -3.2431 43 1 -0.3026 -9.3117 0.5883 44 1 -0.6581 -10.5657 -0.6235 45 1 0.7075 -9.4509 -0.8706 46 1 -3.1642 -11.8029 -1.3337 47 1 0.4022 -2.4484 0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921018334.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:14 Heat of formation + Delta-G solvation = -49.018678 kcal Electronic energy + Delta-G solvation = -27976.596321 eV Core-core repulsion = 24093.002319 eV Total energy + Delta-G solvation = -3883.594003 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.31083 -38.17595 -38.09677 -37.98932 -36.87380 -36.22885 -33.61092 -32.29854 -32.07474 -29.31959 -28.29296 -27.66418 -27.25873 -27.09000 -25.97368 -23.59292 -21.74989 -21.35085 -20.23574 -18.90446 -18.35952 -17.84787 -17.67561 -17.24830 -16.87810 -16.61109 -16.33160 -16.06956 -15.82438 -15.48769 -15.10239 -14.96420 -14.68621 -14.58896 -14.40082 -14.25320 -14.01577 -13.73317 -13.50290 -13.36843 -13.06744 -13.04003 -12.97142 -12.83583 -12.77427 -12.69467 -12.46593 -12.18663 -12.13256 -12.07567 -11.91868 -11.53716 -11.51071 -11.35299 -10.71816 -10.38643 -10.34844 -10.29724 -10.01613 -8.59773 -8.00584 -6.18596 -0.62451 0.21037 0.59614 1.46972 1.48440 1.56484 1.94905 2.10299 2.46824 2.88086 2.97916 3.21518 3.28080 3.40531 3.74898 3.98173 4.01765 4.18656 4.20371 4.25819 4.28618 4.45898 4.48429 4.56793 4.60836 4.63557 4.75074 4.79897 4.86859 4.89007 4.89326 4.91881 4.93201 5.02903 5.06676 5.08694 5.12309 5.42046 5.52291 5.67709 5.69282 5.99776 6.04366 6.14742 6.19687 6.33526 6.37246 6.86383 7.24516 7.49363 8.99266 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016253 B = 0.002714 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.378235 B =10313.128250 C =11432.635327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.629 5.629 3 C 0.084 3.916 4 C 0.240 3.760 5 C -0.246 4.246 6 C 0.127 3.873 7 N -0.548 5.548 8 C 0.144 3.856 9 C 0.159 3.841 10 N -1.107 6.107 11 S 2.612 3.388 12 O -0.994 6.994 13 O -0.992 6.992 14 C -0.582 4.582 15 C 0.069 3.931 16 C -0.159 4.159 17 C -0.162 4.162 18 C -0.515 4.515 19 H 0.067 0.933 20 C 0.016 3.984 21 N -0.908 5.908 22 Si 0.955 3.045 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.266 1.266 26 C -0.237 4.237 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.157 0.843 34 H 0.174 0.826 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.419 0.581 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.027 0.973 41 H 0.069 0.931 42 H 0.044 0.956 43 H 0.041 0.959 44 H 0.072 0.928 45 H 0.030 0.970 46 H 0.261 0.739 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.425 27.268 3.888 28.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.339 5.339 3 C -0.058 4.058 4 C 0.127 3.873 5 C -0.271 4.271 6 C -0.029 4.029 7 N -0.262 5.262 8 C 0.006 3.994 9 C 0.033 3.967 10 N -0.867 5.867 11 S 2.710 3.290 12 O -0.984 6.984 13 O -0.981 6.981 14 C -0.715 4.715 15 C 0.067 3.933 16 C -0.217 4.217 17 C -0.220 4.220 18 C -0.554 4.554 19 H 0.085 0.915 20 C -0.183 4.183 21 N -0.547 5.547 22 Si 0.781 3.219 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.190 1.190 26 C -0.263 4.263 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.175 0.825 34 H 0.191 0.809 35 H 0.100 0.900 36 H 0.128 0.872 37 H 0.254 0.746 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.046 0.954 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.049 0.951 46 H 0.070 0.930 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.291 25.738 3.591 27.278 hybrid contribution -1.670 0.713 0.109 1.819 sum 6.621 26.451 3.700 27.517 Atomic orbital electron populations 1.21904 0.77959 1.04009 1.02227 1.46556 1.06267 1.03101 1.77972 1.21904 0.97792 0.83852 1.02236 1.18213 0.91867 0.86676 0.90534 1.21916 0.92773 1.00795 1.11665 1.22886 1.01088 0.86726 0.92195 1.67513 1.09009 1.32093 1.17618 1.20759 0.89755 0.94046 0.94855 1.20328 1.00937 0.92890 0.82557 1.55327 1.87276 1.30564 1.13523 1.04793 0.78048 0.72482 0.73650 1.93507 1.88390 1.85324 1.31189 1.93505 1.61981 1.70353 1.72298 1.30449 1.20082 1.07438 1.13536 1.17923 0.95841 0.86617 0.92882 1.22164 0.98913 1.03469 0.97143 1.22257 0.96292 1.04031 0.99395 1.21299 0.98570 0.97714 1.37846 0.91459 1.25698 1.01801 0.95437 0.95368 1.69968 1.37103 1.00858 1.46762 0.85624 0.80659 0.76956 0.78692 1.20289 1.21607 1.19009 1.21631 1.01979 0.90917 1.11756 0.92481 0.91113 0.89316 0.92439 0.90623 0.89495 0.82515 0.80898 0.89954 0.87165 0.74599 0.83975 0.83843 0.95450 0.91178 0.93721 0.93996 0.90928 0.95146 0.92986 0.83060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.26 127.77 1.31 2.00 16 2 N -0.63 -7.48 3.39 -746.63 -2.53 -10.01 16 3 C 0.08 0.54 10.27 127.77 1.31 1.85 16 4 C 0.24 4.05 6.58 38.57 0.25 4.31 16 5 C -0.25 -3.91 9.27 22.49 0.21 -3.70 16 6 C 0.13 2.51 11.17 84.58 0.94 3.45 16 7 N -0.55 -14.49 10.27 -184.20 -1.89 -16.38 16 8 C 0.14 3.46 6.17 42.46 0.26 3.72 16 9 C 0.16 3.97 6.44 85.63 0.55 4.52 16 10 N -1.11 -31.17 5.88 -190.80 -1.12 -32.29 16 11 S 2.61 97.67 4.49 -56.49 -0.25 97.42 16 12 O -0.99 -42.63 15.84 -127.65 -2.02 -44.65 16 13 O -0.99 -43.35 15.12 -127.65 -1.93 -45.28 16 14 C -0.58 -21.47 5.01 71.98 0.36 -21.11 16 15 C 0.07 3.33 0.52 -52.93 -0.03 3.31 16 16 C -0.16 -7.93 7.58 71.98 0.55 -7.39 16 17 C -0.16 -8.14 7.79 71.98 0.56 -7.58 16 18 C -0.52 -26.41 8.01 25.60 0.20 -26.21 16 19 H 0.07 3.26 7.75 -2.91 -0.02 3.24 16 20 C 0.02 0.86 5.09 84.65 0.43 1.29 16 21 N -0.91 -50.45 9.39 21.45 0.20 -50.25 16 22 Si 0.95 41.73 29.54 68.60 2.03 43.75 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 26 C -0.24 -4.53 8.87 22.49 0.20 -4.33 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.07 0.65 6.26 -2.39 -0.01 0.64 16 29 H 0.09 0.43 7.89 -2.39 -0.02 0.41 16 30 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.08 0.41 6.25 -2.38 -0.01 0.40 16 32 H 0.09 0.27 7.89 -2.39 -0.02 0.25 16 33 H 0.16 1.55 6.27 -2.91 -0.02 1.54 16 34 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.08 2.32 7.69 -2.39 -0.02 2.30 16 36 H 0.11 2.01 8.04 -2.39 -0.02 1.99 16 37 H 0.42 10.65 8.61 -96.75 -0.83 9.82 16 38 H 0.14 4.51 8.14 -2.39 -0.02 4.49 16 39 H 0.14 4.57 8.14 -2.39 -0.02 4.55 16 40 H 0.03 1.32 5.96 -2.39 -0.01 1.30 16 41 H 0.07 3.82 5.99 -2.39 -0.01 3.80 16 42 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 44 H 0.07 3.99 6.01 -2.39 -0.01 3.98 16 45 H 0.03 1.47 5.46 -2.39 -0.01 1.46 16 46 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 47 H 0.15 2.28 6.28 -2.91 -0.02 2.26 16 Total: -1.00 -74.19 379.84 -0.25 -74.44 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.16 Total: 29.12 kcal Atomic # 6 Polarization: -52.97 SS G_CDS: 7.12 Total: -45.86 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -5.35 Total: -108.93 kcal Atomic # 8 Polarization: -85.99 SS G_CDS: -3.95 Total: -89.94 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 16 Polarization: 97.67 SS G_CDS: -0.25 Total: 97.42 kcal Total: -74.19 -0.25 -74.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921018334.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.421 kcal (2) G-P(sol) polarization free energy of solvation -74.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds