Wall clock time and date at job start Sat Apr 11 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40092 * 126.03405 * 2 1 4 4 C 1.30838 * 108.20022 * 180.23546 * 3 2 1 5 5 C 1.50700 * 125.89421 * 179.81553 * 4 3 2 6 6 C 1.53007 * 117.49395 * 163.71031 * 5 4 3 7 7 C 1.53003 * 117.49427 * 95.05148 * 5 4 3 8 8 C 1.39870 * 108.20257 * 359.78498 * 4 3 2 9 9 C 1.34938 * 126.03905 * 179.85506 * 2 1 3 10 10 C 1.50706 * 126.12627 * 0.03340 * 9 2 1 11 11 N 1.46500 * 109.46949 * 274.71364 * 10 9 2 12 12 S 1.65600 * 120.00242 * 164.99842 * 11 10 9 13 13 O 1.42094 * 104.27575 * 181.07211 * 12 11 10 14 14 O 1.42097 * 104.27601 * 308.93158 * 12 11 10 15 15 C 1.81403 * 104.44440 * 65.00053 * 12 11 10 16 16 C 1.53002 * 109.46498 * 180.02562 * 15 12 11 17 17 C 1.52998 * 109.47335 * 299.99727 * 16 15 12 18 18 C 1.52996 * 109.47570 * 59.99982 * 16 15 12 19 19 C 1.50705 * 109.47025 * 179.97438 * 16 15 12 20 20 H 1.07998 * 119.99790 * 0.02562 * 19 16 15 21 21 C 1.37878 * 120.00063 * 179.97438 * 19 16 15 22 22 N 1.31514 * 120.00083 * 0.02562 * 21 19 16 23 23 Si 1.86794 * 119.99748 * 180.02562 * 21 19 16 24 24 H 1.48497 * 109.47561 * 90.00208 * 23 21 19 25 25 H 1.48506 * 109.47172 * 210.00250 * 23 21 19 26 26 H 1.48507 * 109.47174 * 329.99675 * 23 21 19 27 27 H 1.09007 * 109.46730 * 270.14734 * 1 2 3 28 28 H 1.09001 * 109.47009 * 30.14365 * 1 2 3 29 29 H 1.09002 * 109.47031 * 150.14931 * 1 2 3 30 30 H 1.08999 * 115.55003 * 309.37581 * 5 4 3 31 31 H 1.09000 * 117.50123 * 359.97438 * 6 5 4 32 32 H 1.08998 * 117.49549 * 145.02855 * 6 5 4 33 33 H 1.09006 * 117.49548 * 214.97585 * 7 5 4 34 34 H 1.08990 * 117.50336 * 359.97386 * 7 5 4 35 35 H 1.08002 * 126.03822 * 179.97438 * 8 4 3 36 36 H 1.09000 * 109.47318 * 34.70750 * 10 9 2 37 37 H 1.09000 * 109.47161 * 154.71380 * 10 9 2 38 38 H 0.97004 * 119.99709 * 345.00016 * 11 10 9 39 39 H 1.09001 * 109.47372 * 299.99697 * 15 12 11 40 40 H 1.08995 * 109.47394 * 60.00732 * 15 12 11 41 41 H 1.09001 * 109.47233 * 60.00089 * 17 16 15 42 42 H 1.08997 * 109.47429 * 180.02562 * 17 16 15 43 43 H 1.08997 * 109.47367 * 300.00581 * 17 16 15 44 44 H 1.09003 * 109.46990 * 59.99466 * 18 16 15 45 45 H 1.08997 * 109.47840 * 179.97438 * 18 16 15 46 46 H 1.08997 * 109.47019 * 300.00113 * 18 16 15 47 47 H 0.97003 * 120.00002 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1329 0.0000 4 6 3.5347 0.7322 -0.0051 5 6 4.7496 1.6238 -0.0109 6 6 6.0915 0.9916 0.3644 7 6 5.3956 1.9462 1.3381 8 6 3.5437 -0.6665 -0.0035 9 6 2.2589 -1.0911 0.0028 10 6 1.7974 -2.5258 0.0057 11 7 1.5391 -2.9528 1.3831 12 16 0.6773 -4.3368 1.6731 13 8 0.6066 -4.4151 3.0901 14 8 -0.4977 -4.1890 0.8879 15 6 1.7206 -5.6661 1.0134 16 6 1.0246 -7.0124 1.2235 17 6 0.7940 -7.2395 2.7188 18 6 -0.3205 -7.0104 0.4946 19 6 1.8910 -8.1168 0.6749 20 1 2.8429 -7.8819 0.2221 21 6 1.4688 -9.4271 0.7519 22 7 0.3098 -9.7131 1.3037 23 14 2.5430 -10.7959 0.0726 24 1 3.4526 -11.2868 1.1388 25 1 1.6839 -11.9122 -0.3978 26 1 3.3465 -10.2771 -1.0635 27 1 -0.3633 0.0026 1.0277 28 1 -0.3633 0.8887 -0.5161 29 1 -0.3633 -0.8913 -0.5115 30 1 4.7562 2.4044 -0.7716 31 1 6.0954 -0.0690 0.6159 32 1 6.9809 1.3568 -0.1490 33 1 5.8276 2.9389 1.4647 34 1 4.9417 1.5139 2.2296 35 1 4.4211 -1.2963 -0.0071 36 1 0.8821 -2.6142 -0.5797 37 1 2.5708 -3.1572 -0.4315 38 1 1.8729 -2.4248 2.1252 39 1 1.8845 -5.5046 -0.0520 40 1 2.6790 -5.6674 1.5325 41 1 0.1672 -6.4407 3.1152 42 1 0.2986 -8.1988 2.8685 43 1 1.7523 -7.2410 3.2382 44 1 -0.1562 -6.8486 -0.5708 45 1 -0.8162 -7.9696 0.6438 46 1 -0.9473 -6.2116 0.8909 47 1 0.0125 -10.6349 1.3576 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921901125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:29 Heat of formation + Delta-G solvation = 29.062120 kcal Electronic energy + Delta-G solvation = -28140.839056 eV Core-core repulsion = 24260.630891 eV Total energy + Delta-G solvation = -3880.208165 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.56799 -37.47615 -36.67134 -36.33548 -35.56366 -35.29062 -33.04757 -31.71295 -30.56811 -27.06668 -26.71255 -25.92620 -25.76649 -25.25669 -23.41144 -22.65850 -20.36163 -19.76189 -19.48468 -18.87911 -17.61636 -16.95653 -16.07329 -15.97475 -15.92749 -15.47173 -15.32461 -14.79189 -14.64155 -14.50842 -14.43358 -13.83783 -13.28465 -13.06490 -12.92248 -12.79742 -12.62108 -12.56063 -12.23620 -12.15590 -11.78490 -11.69693 -11.53838 -11.18658 -11.12428 -11.10931 -10.99592 -10.88023 -10.76454 -10.48030 -10.43112 -10.33237 -10.17183 -9.76328 -9.70227 -9.40790 -9.28091 -8.74888 -8.69154 -8.44086 -6.07447 -4.19678 0.70515 1.59588 2.26216 2.45080 3.18855 3.23391 3.30964 3.32617 3.56561 4.07857 4.18129 4.25359 4.34394 4.58385 4.64636 4.65672 4.70563 4.88283 4.98770 5.08786 5.13247 5.18147 5.30834 5.34844 5.39761 5.47539 5.52392 5.60664 5.62038 5.79044 5.83046 5.85072 5.97629 6.31330 6.42605 6.64785 6.74296 6.77079 6.84570 6.91322 7.00764 7.26579 7.45213 7.53479 7.63957 7.93606 8.04871 8.28323 8.78966 9.46132 10.93903 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016432 B = 0.002742 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.539717 B =10208.847640 C =11099.140852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.361 5.361 3 N -0.286 5.286 4 C 0.099 3.901 5 C -0.080 4.080 6 C -0.165 4.165 7 C -0.166 4.166 8 C -0.249 4.249 9 C 0.078 3.922 10 C 0.180 3.820 11 N -1.128 6.128 12 S 2.592 3.408 13 O -0.961 6.961 14 O -0.964 6.964 15 C -0.580 4.580 16 C 0.082 3.918 17 C -0.165 4.165 18 C -0.164 4.164 19 C -0.503 4.503 20 H 0.059 0.941 21 C 0.065 3.935 22 N -0.884 5.884 23 Si 0.896 3.104 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.151 0.849 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.415 0.585 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.027 0.973 42 H 0.095 0.905 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.095 0.905 46 H 0.028 0.972 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.637 19.384 -3.104 20.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.144 5.144 3 N -0.108 5.108 4 C -0.066 4.066 5 C -0.099 4.099 6 C -0.202 4.202 7 C -0.204 4.204 8 C -0.280 4.280 9 C -0.051 4.051 10 C 0.052 3.948 11 N -0.885 5.885 12 S 2.690 3.310 13 O -0.951 6.951 14 O -0.954 6.954 15 C -0.714 4.714 16 C 0.080 3.920 17 C -0.222 4.222 18 C -0.222 4.222 19 C -0.542 4.542 20 H 0.078 0.922 21 C -0.137 4.137 22 N -0.522 5.522 23 Si 0.724 3.276 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.199 1.199 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.136 0.864 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.168 0.832 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.248 0.752 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.046 0.954 42 H 0.114 0.886 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.114 0.886 46 H 0.047 0.953 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.582 20.116 -2.807 20.821 hybrid contribution 1.773 -1.417 -0.393 2.303 sum 6.355 18.699 -3.199 20.007 Atomic orbital electron populations 1.21982 0.73841 1.04848 1.03971 1.48473 1.06650 1.03068 1.56176 1.77307 1.01131 1.07475 1.24913 1.21312 0.92157 0.93029 1.00078 1.20118 0.88998 1.00451 1.00380 1.23036 0.94541 0.99709 1.02950 1.23001 1.03181 1.00840 0.93351 1.21135 0.96245 0.94299 1.16295 1.20948 0.91177 0.90066 1.02867 1.19772 1.02304 0.88672 0.84084 1.55982 1.76219 1.44121 1.12198 1.05723 0.75803 0.74531 0.74909 1.93567 1.86489 1.85736 1.29303 1.93534 1.44695 1.84997 1.72142 1.30523 1.14259 1.15251 1.11404 1.17933 0.92928 0.87212 0.93917 1.22285 1.00325 1.03634 0.95997 1.22282 0.97711 1.03284 0.98913 1.20940 1.04027 0.90263 1.39011 0.92235 1.24940 0.95145 0.98643 0.95010 1.69798 1.19413 1.19127 1.43815 0.86529 0.80258 0.81566 0.79244 1.20633 1.21134 1.19915 0.90413 0.89126 0.88735 0.86370 0.88065 0.88098 0.88269 0.88583 0.83176 0.88975 0.88784 0.75234 0.86331 0.86030 0.95420 0.88596 0.94411 0.94431 0.88627 0.95337 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 11.27 59.85 0.67 1.56 16 2 N -0.36 -4.32 4.01 -63.88 -0.26 -4.58 16 3 N -0.29 -3.74 12.58 33.67 0.42 -3.32 16 4 C 0.10 1.15 6.85 -82.40 -0.56 0.59 16 5 C -0.08 -0.70 6.33 -91.77 -0.58 -1.28 16 6 C -0.16 -1.14 10.02 -26.68 -0.27 -1.41 16 7 C -0.17 -1.25 10.24 -26.69 -0.27 -1.53 16 8 C -0.25 -2.75 10.02 -40.01 -0.40 -3.15 16 9 C 0.08 0.90 6.33 -82.27 -0.52 0.38 16 10 C 0.18 1.96 6.30 -5.19 -0.03 1.93 16 11 N -1.13 -14.23 5.88 -11.65 -0.07 -14.30 16 12 S 2.59 44.52 4.49 -107.50 -0.48 44.04 16 13 O -0.96 -19.32 15.70 -57.54 -0.90 -20.23 16 14 O -0.96 -18.51 15.12 -57.54 -0.87 -19.38 16 15 C -0.58 -10.55 5.01 37.16 0.19 -10.36 16 16 C 0.08 1.92 0.52 -155.66 -0.08 1.84 16 17 C -0.16 -3.96 7.78 37.16 0.29 -3.67 16 18 C -0.16 -3.89 7.77 37.16 0.29 -3.60 16 19 C -0.50 -12.81 8.01 -34.44 -0.28 -13.09 16 20 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 21 C 0.06 1.68 5.15 -17.82 -0.09 1.59 16 22 N -0.88 -23.67 9.35 55.43 0.52 -23.15 16 23 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.79 7.14 -51.93 -0.37 0.42 16 30 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.10 0.71 7.15 -51.93 -0.37 0.34 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.15 1.36 7.39 -52.49 -0.39 0.98 16 36 H 0.09 0.98 6.78 -51.93 -0.35 0.63 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.41 4.81 8.61 -34.47 -0.30 4.51 16 39 H 0.12 1.88 8.14 -51.92 -0.42 1.46 16 40 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 41 H 0.03 0.63 5.47 -51.93 -0.28 0.34 16 42 H 0.10 2.49 6.07 -51.93 -0.32 2.18 16 43 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 46 H 0.03 0.63 5.46 -51.93 -0.28 0.35 16 47 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 385.36 15.07 5.81 5.81 Total: -1.00 -32.70 385.36 -9.67 -42.38 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -7.17 Total: 7.75 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: -1.65 Total: -30.21 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.62 Total: -45.35 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -1.77 Total: -39.61 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 44.52 SS G_CDS: -0.48 Total: 44.04 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.70 -9.67 -42.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921901125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.438 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds