Wall clock time and date at job start Sat Apr 11 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 117.00009 * 2 1 4 4 O 1.20828 * 120.00572 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00023 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47191 * 179.97438 * 5 3 2 7 7 C 1.37106 * 119.99736 * 90.00256 * 6 5 3 8 8 H 1.07998 * 119.99665 * 156.88595 * 7 6 5 9 9 C 1.38948 * 120.00060 * 336.87583 * 7 6 5 10 10 N 1.31415 * 119.99896 * 8.78622 * 9 7 6 11 11 Si 1.86804 * 120.00062 * 188.77553 * 9 7 6 12 12 H 1.48501 * 109.46574 * 90.00554 * 11 9 7 13 13 H 1.48503 * 109.46949 * 210.00243 * 11 9 7 14 14 H 1.48499 * 109.46915 * 330.00580 * 11 9 7 15 15 C 1.34770 * 120.00373 * 270.00223 * 6 5 3 16 16 O 1.21293 * 119.99609 * 5.20924 * 15 6 5 17 17 C 1.50705 * 120.00245 * 185.21604 * 15 6 5 18 18 H 1.08996 * 112.84735 * 342.73553 * 17 15 6 19 19 C 1.53781 * 113.61165 * 211.54178 * 17 15 6 20 20 C 1.53780 * 87.08013 * 270.88212 * 19 17 15 21 21 C 1.53782 * 113.61382 * 113.93316 * 17 15 6 22 22 H 1.09000 * 113.61096 * 203.66610 * 21 17 15 23 23 C 1.50697 * 113.61591 * 334.56716 * 21 17 15 24 24 O 1.20820 * 120.00088 * 2.35018 * 23 21 17 25 25 O 1.34231 * 120.00156 * 182.34934 * 23 21 17 26 26 C 1.45194 * 117.00146 * 179.97438 * 25 23 21 27 27 C 1.53002 * 109.46909 * 60.00251 * 26 25 23 28 28 C 1.53007 * 109.47198 * 180.02562 * 26 25 23 29 29 C 1.52998 * 109.47209 * 300.00011 * 26 25 23 30 30 H 1.08996 * 109.47119 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46938 * 59.99868 * 1 2 3 32 32 H 1.08999 * 109.46770 * 300.00280 * 1 2 3 33 33 H 1.08999 * 109.46995 * 299.99549 * 5 3 2 34 34 H 1.09003 * 109.47304 * 59.99669 * 5 3 2 35 35 H 0.97003 * 119.99971 * 174.98426 * 10 9 7 36 36 H 1.09001 * 113.61741 * 25.42772 * 19 17 15 37 37 H 1.08997 * 113.61380 * 156.25127 * 19 17 15 38 38 H 1.09002 * 113.61719 * 89.11917 * 20 19 17 39 39 H 1.09001 * 113.61541 * 220.01909 * 20 19 17 40 40 H 1.08999 * 109.47451 * 59.99829 * 27 26 25 41 41 H 1.09008 * 109.47175 * 179.97438 * 27 26 25 42 42 H 1.08998 * 109.47082 * 299.99343 * 27 26 25 43 43 H 1.08993 * 109.46863 * 60.00050 * 28 26 25 44 44 H 1.08992 * 109.46847 * 180.02562 * 28 26 25 45 45 H 1.08999 * 109.46977 * 300.00057 * 28 26 25 46 46 H 1.09003 * 109.46994 * 60.00287 * 29 26 25 47 47 H 1.09008 * 109.46949 * 179.97438 * 29 26 25 48 48 H 1.08993 * 109.47249 * 300.00193 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.1757 3.3378 1.1869 8 1 4.8155 4.2070 1.2241 9 6 3.5488 2.8865 2.3419 10 7 2.9122 1.7369 2.3377 11 14 3.6111 3.9140 3.9008 12 1 2.4503 4.8396 3.9302 13 1 3.5613 3.0197 5.0853 14 1 4.8712 4.6993 3.9259 15 6 4.1733 3.3252 -1.1676 16 8 3.9113 2.7736 -2.2156 17 6 4.7131 4.7323 -1.1709 18 1 4.6276 5.2207 -0.2003 19 6 4.1949 5.5880 -2.3389 20 6 5.3949 5.0689 -3.1484 21 6 6.1105 4.8545 -1.8011 22 1 6.6687 5.7262 -1.4596 23 6 6.9145 3.5815 -1.7383 24 8 6.4278 2.5823 -1.2643 25 8 8.1714 3.5575 -2.2088 26 6 8.8865 2.2974 -2.1152 27 6 8.1324 1.2235 -2.9021 28 6 10.2919 2.4640 -2.6966 29 6 8.9888 1.8768 -0.6477 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 3.9557 0.7810 0.8909 34 1 3.9565 0.7805 -0.8891 35 1 2.5371 1.3871 3.1611 36 1 3.2311 5.2589 -2.7273 37 1 4.2290 6.6598 -2.1437 38 1 5.1910 4.1432 -3.6867 39 1 5.8613 5.8297 -3.7744 40 1 8.0595 1.5231 -3.9476 41 1 8.6695 0.2775 -2.8322 42 1 7.1314 1.1048 -2.4874 43 1 10.8288 3.2289 -2.1357 44 1 10.8285 1.5178 -2.6268 45 1 10.2194 2.7638 -3.7421 46 1 7.9878 1.7582 -0.2331 47 1 9.5253 0.9305 -0.5775 48 1 9.5260 2.6419 -0.0871 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933217598.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:46 Heat of formation + Delta-G solvation = -180.404753 kcal Electronic energy + Delta-G solvation = -33060.298128 eV Core-core repulsion = 28695.961175 eV Total energy + Delta-G solvation = -4364.336952 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.28558 -41.21544 -40.52522 -38.53164 -37.49469 -37.00553 -36.33454 -34.92854 -33.35259 -30.57670 -28.36553 -28.29261 -28.26912 -28.12737 -27.23134 -25.96300 -23.41252 -22.51858 -21.45843 -20.69763 -20.39046 -18.76206 -18.56113 -18.30569 -17.65087 -17.29665 -17.11487 -16.95972 -16.83601 -16.24817 -15.95872 -15.67426 -15.33593 -15.19348 -15.12713 -14.56502 -14.30877 -14.12099 -14.01472 -13.76787 -13.28434 -13.24738 -13.18126 -13.02515 -12.90431 -12.88115 -12.81421 -12.76675 -12.64299 -12.43683 -12.39680 -12.34077 -12.10169 -11.96959 -11.71842 -11.58511 -11.44974 -11.29758 -11.16008 -10.87056 -10.69493 -10.21728 -9.72705 -8.26160 -5.90956 1.38078 1.40347 1.44826 1.55223 1.70855 1.79342 1.97010 2.23705 2.36945 2.97167 3.17442 3.51206 3.64300 3.78044 3.82814 3.85035 3.98166 4.00487 4.15715 4.28509 4.33951 4.38482 4.49805 4.59189 4.60601 4.63670 4.65546 4.73196 4.77054 4.79688 4.83761 4.90303 4.91482 4.95102 5.00465 5.08143 5.09726 5.15160 5.29888 5.37816 5.44603 5.50618 5.66987 5.67982 5.89320 6.41412 7.01534 7.15394 7.26299 7.65474 8.06528 8.76433 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011007 B = 0.004567 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.326799 B = 6128.899986 C = 6466.245534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.380 6.380 3 C 0.493 3.507 4 O -0.549 6.549 5 C 0.170 3.830 6 N -0.435 5.435 7 C -0.327 4.327 8 H 0.111 0.889 9 C -0.011 4.011 10 N -0.914 5.914 11 Si 0.994 3.006 12 H -0.285 1.285 13 H -0.284 1.284 14 H -0.252 1.252 15 C 0.511 3.489 16 O -0.632 6.632 17 C -0.122 4.122 18 H 0.105 0.895 19 C -0.111 4.111 20 C -0.103 4.103 21 C -0.088 4.088 22 H 0.164 0.836 23 C 0.456 3.544 24 O -0.496 6.496 25 O -0.352 6.352 26 C 0.108 3.892 27 C -0.177 4.177 28 C -0.130 4.130 29 C -0.177 4.177 30 H 0.133 0.867 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.123 0.877 34 H 0.062 0.938 35 H 0.268 0.732 36 H 0.052 0.948 37 H 0.130 0.870 38 H 0.062 0.938 39 H 0.116 0.884 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.070 0.930 46 H 0.049 0.951 47 H 0.086 0.914 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.197 3.667 -6.179 13.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.296 6.296 3 C 0.337 3.663 4 O -0.438 6.438 5 C 0.044 3.956 6 N -0.153 5.153 7 C -0.454 4.454 8 H 0.129 0.871 9 C -0.209 4.209 10 N -0.556 5.556 11 Si 0.819 3.181 12 H -0.211 1.211 13 H -0.209 1.209 14 H -0.175 1.175 15 C 0.302 3.698 16 O -0.520 6.520 17 C -0.143 4.143 18 H 0.123 0.877 19 C -0.148 4.148 20 C -0.140 4.140 21 C -0.107 4.107 22 H 0.182 0.818 23 C 0.299 3.701 24 O -0.383 6.383 25 O -0.270 6.270 26 C 0.072 3.928 27 C -0.234 4.234 28 C -0.187 4.187 29 C -0.235 4.235 30 H 0.151 0.849 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.141 0.859 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.148 0.852 38 H 0.081 0.919 39 H 0.134 0.866 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.115 0.885 45 H 0.089 0.911 46 H 0.068 0.932 47 H 0.105 0.895 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.593 3.253 -6.397 12.796 hybrid contribution -0.849 -0.312 1.255 1.547 sum 9.744 2.941 -5.143 11.404 Atomic orbital electron populations 1.23269 0.76449 1.04758 1.01045 1.86436 1.23968 1.34162 1.85077 1.24171 0.92679 0.80545 0.68906 1.90441 1.67471 1.37641 1.48260 1.20374 0.86396 0.86488 1.02335 1.43165 1.58518 1.07879 1.05758 1.19961 1.27126 1.12587 0.85754 0.87144 1.26120 0.94493 0.97322 1.02986 1.69721 1.37855 1.19354 1.28625 0.84900 0.78891 0.77820 0.76530 1.21109 1.20919 1.17517 1.19820 0.79524 0.87762 0.82664 1.90446 1.58825 1.69870 1.32897 1.22417 0.95668 0.94242 1.02018 0.87715 1.22768 0.98072 1.00304 0.93681 1.22806 0.95158 1.02068 0.93987 1.22748 0.92090 0.94923 1.00948 0.81839 1.23868 0.80622 0.91399 0.74210 1.90674 1.70072 1.36220 1.41310 1.86510 1.26348 1.38893 1.75272 1.22408 0.93016 0.81072 0.96286 1.22407 1.01454 0.99536 1.00031 1.21826 0.90959 1.04225 1.01690 1.22415 1.02982 1.02923 0.95148 0.84858 0.93189 0.93731 0.85908 0.92052 0.92224 0.92948 0.85235 0.91906 0.86620 0.91982 0.89363 0.93513 0.90794 0.88530 0.91068 0.93170 0.89483 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.42 10.56 113.37 1.20 2.62 16 2 O -0.38 -17.98 10.57 -51.36 -0.54 -18.52 16 3 C 0.49 26.94 5.91 71.24 0.42 27.36 16 4 O -0.55 -32.87 15.93 21.96 0.35 -32.52 16 5 C 0.17 9.26 5.21 85.63 0.45 9.71 16 6 N -0.44 -23.36 1.76 -639.59 -1.12 -24.48 16 7 C -0.33 -17.10 8.98 84.04 0.75 -16.34 16 8 H 0.11 5.31 6.02 -2.91 -0.02 5.29 16 9 C -0.01 -0.55 5.41 84.93 0.46 -0.09 16 10 N -0.91 -49.87 8.21 21.66 0.18 -49.70 16 11 Si 0.99 41.46 29.57 68.60 2.03 43.49 16 12 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 13 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 14 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 15 C 0.51 25.73 4.08 87.66 0.36 26.09 16 16 O -0.63 -34.94 14.54 13.33 0.19 -34.75 16 17 C -0.12 -4.72 3.67 -11.01 -0.04 -4.76 16 18 H 0.10 3.97 6.04 -2.39 -0.01 3.95 16 19 C -0.11 -3.41 7.46 31.12 0.23 -3.17 16 20 C -0.10 -2.96 7.21 31.21 0.23 -2.73 16 21 C -0.09 -2.69 4.22 -10.92 -0.05 -2.74 16 22 H 0.16 3.56 8.14 -2.39 -0.02 3.55 16 23 C 0.46 16.42 6.68 71.23 0.48 16.90 16 24 O -0.50 -21.80 8.72 27.70 0.24 -21.56 16 25 O -0.35 -10.71 9.89 -51.43 -0.51 -11.22 16 26 C 0.11 2.85 1.13 -10.79 -0.01 2.84 16 27 C -0.18 -5.07 8.37 71.98 0.60 -4.47 16 28 C -0.13 -2.29 8.85 71.98 0.64 -1.65 16 29 C -0.18 -4.90 8.37 71.98 0.60 -4.30 16 30 H 0.13 3.55 8.14 -2.39 -0.02 3.53 16 31 H 0.05 1.82 8.13 -2.39 -0.02 1.80 16 32 H 0.04 1.71 8.13 -2.39 -0.02 1.69 16 33 H 0.12 6.84 6.29 -2.39 -0.02 6.82 16 34 H 0.06 3.36 7.50 -2.39 -0.02 3.34 16 35 H 0.27 14.08 8.32 -92.71 -0.77 13.31 16 36 H 0.05 1.90 8.00 -2.39 -0.02 1.88 16 37 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.06 2.28 7.10 -2.39 -0.02 2.26 16 39 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.05 1.77 5.89 -2.39 -0.01 1.75 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.05 1.82 5.89 -2.39 -0.01 1.81 16 47 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 48 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -76.42 383.49 8.10 -68.33 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: 0.97 Total: 35.68 kcal Atomic # 6 Polarization: 38.94 SS G_CDS: 6.31 Total: 45.25 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -0.95 Total: -74.18 kcal Atomic # 8 Polarization: -118.30 SS G_CDS: -0.27 Total: -118.56 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -76.42 8.10 -68.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933217598.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.079 kcal (2) G-P(sol) polarization free energy of solvation -76.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds