Wall clock time and date at job start Sat Apr 11 2020 06:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.46959 * 2 1 4 4 N 1.30285 * 124.97257 * 304.97337 * 3 2 1 5 5 C 1.34655 * 109.66599 * 180.02562 * 4 3 2 6 6 C 1.40826 * 107.26386 * 0.23838 * 5 4 3 7 7 N 1.32118 * 120.46574 * 180.33156 * 6 5 4 8 8 C 1.31733 * 121.94264 * 359.74576 * 7 6 5 9 9 C 1.38332 * 121.54708 * 359.97438 * 8 7 6 10 10 C 1.39631 * 119.37978 * 0.02562 * 9 8 7 11 11 C 1.47766 * 121.07855 * 179.97438 * 10 9 8 12 12 O 1.21557 * 120.00297 * 179.97438 * 11 10 9 13 13 N 1.34779 * 119.99721 * 359.97438 * 11 10 9 14 14 C 1.46494 * 120.00304 * 180.02562 * 13 11 10 15 15 H 1.09001 * 115.51514 * 9.41699 * 14 13 11 16 16 C 1.53004 * 117.44518 * 224.00601 * 14 13 11 17 17 H 1.08992 * 119.54027 * 4.11257 * 16 14 13 18 18 C 1.57739 * 116.08167 * 161.57705 * 16 14 13 19 19 N 1.48144 * 104.61744 * 87.40265 * 18 16 14 20 20 C 1.36945 * 127.83555 * 139.75955 * 19 18 16 21 21 H 1.07993 * 120.00110 * 195.54811 * 20 19 18 22 22 C 1.38814 * 120.00084 * 15.55392 * 20 19 18 23 23 N 1.31622 * 119.99815 * 9.00392 * 22 20 19 24 24 Si 1.86798 * 119.99953 * 189.00847 * 22 20 19 25 25 H 1.48501 * 109.47210 * 94.44432 * 24 22 20 26 26 H 1.48498 * 109.46930 * 214.44351 * 24 22 20 27 27 H 1.48496 * 109.46895 * 334.44270 * 24 22 20 28 28 C 1.48134 * 104.32684 * 319.76204 * 19 18 16 29 29 C 1.52997 * 117.44621 * 154.83350 * 14 13 11 30 30 H 1.08995 * 119.53867 * 355.88479 * 29 14 13 31 31 N 1.36001 * 124.96836 * 125.55440 * 3 2 1 32 32 H 0.96997 * 126.35246 * 359.43017 * 31 3 2 33 33 H 1.09001 * 109.46951 * 300.00125 * 1 2 3 34 34 H 1.09004 * 109.47458 * 59.99811 * 1 2 3 35 35 H 1.08997 * 109.47238 * 179.97438 * 1 2 3 36 36 H 1.09001 * 109.46951 * 239.99875 * 2 1 3 37 37 H 1.08999 * 109.46783 * 120.00080 * 2 1 3 38 38 H 1.08003 * 119.22347 * 180.02562 * 8 7 6 39 39 H 1.08000 * 120.31093 * 180.02562 * 9 8 7 40 40 H 0.97002 * 119.99815 * 0.02562 * 13 11 10 41 41 H 1.09000 * 110.95869 * 328.33998 * 18 16 14 42 42 H 1.09005 * 109.85248 * 205.91528 * 18 16 14 43 43 H 0.97000 * 120.00066 * 179.97438 * 23 22 20 44 44 H 1.09005 * 110.41127 * 280.80019 * 28 19 18 45 45 H 1.08997 * 110.51030 * 158.41624 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.7042 2.3288 -0.8748 5 6 2.3297 3.4853 -0.5839 6 6 3.1109 3.2601 0.5660 7 7 3.8350 4.2355 1.0854 8 6 3.8617 5.4416 0.5562 9 6 3.1303 5.7513 -0.5763 10 6 2.3438 4.7650 -1.1749 11 6 1.5472 5.0548 -2.3852 12 8 0.8696 4.1813 -2.8905 13 7 1.5719 6.2879 -2.9288 14 6 0.7817 6.5755 -4.1284 15 1 0.0811 5.7958 -4.4273 16 6 1.4559 7.3817 -5.2404 17 1 2.5061 7.6566 -5.1437 18 6 0.7826 7.2968 -6.6643 19 7 -0.2431 8.3658 -6.6572 20 6 -0.5697 9.2234 -7.6736 21 1 -1.1505 10.1100 -7.4665 22 6 -0.1543 8.9531 -8.9703 23 7 0.3969 7.7925 -9.2563 24 14 -0.3775 10.2364 -10.3092 25 1 0.8677 11.0346 -10.4423 26 1 -0.6724 9.5607 -11.5982 27 1 -1.5051 11.1340 -9.9514 28 6 -0.8352 8.2965 -5.3011 29 6 0.3634 8.0279 -4.3658 30 1 0.5998 8.7844 -3.6175 31 7 2.9031 1.9397 0.9067 32 1 3.2973 1.4708 1.6588 33 1 -0.3633 0.5139 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 -0.3633 -1.0276 -0.0005 36 1 1.8933 -0.5139 -0.8900 37 1 1.8933 -0.5138 0.8900 38 1 4.4696 6.2062 1.0170 39 1 3.1673 6.7467 -0.9937 40 1 2.1129 6.9849 -2.5258 41 1 0.3162 6.3236 -6.8177 42 1 1.5264 7.4889 -7.4376 43 1 0.6868 7.6035 -10.1624 44 1 -1.5543 7.4795 -5.2415 45 1 -1.3132 9.2419 -5.0444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961336297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:54 Heat of formation + Delta-G solvation = 116.977430 kcal Electronic energy + Delta-G solvation = -28311.621067 eV Core-core repulsion = 24332.073996 eV Total energy + Delta-G solvation = -3979.547071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.78614 -39.88840 -38.73828 -37.98685 -34.50019 -34.03307 -33.89878 -32.76703 -31.53837 -30.10368 -29.50858 -26.97088 -25.95910 -25.32496 -23.96234 -23.38459 -21.77916 -21.08552 -20.68753 -20.34289 -19.27508 -18.55592 -17.94142 -17.34905 -16.82449 -16.27278 -16.15787 -15.40703 -15.09843 -14.81098 -14.70460 -14.45569 -14.39408 -14.06690 -13.54607 -13.35239 -13.26953 -12.84636 -12.71666 -12.45495 -12.20268 -12.01252 -11.63573 -11.56524 -11.46295 -11.29458 -11.13239 -10.96062 -10.82487 -10.33143 -10.18658 -10.16813 -10.05773 -9.73119 -9.41789 -9.26162 -9.16349 -8.75386 -8.71116 -8.28231 -6.85575 -5.78040 -3.12788 0.09083 0.79992 2.09560 2.40319 2.83991 2.99566 3.39602 3.44714 3.47191 3.57917 3.63366 4.01569 4.23161 4.36578 4.38917 4.46332 4.49461 4.63516 4.72659 4.79596 5.05437 5.13466 5.20073 5.34955 5.40192 5.42337 5.43403 5.51149 5.58377 5.62117 5.67957 5.83607 5.90719 5.95035 6.08776 6.18456 6.24429 6.53568 6.70837 6.70967 6.83984 6.89901 7.37727 7.43951 7.48198 7.55904 7.58271 7.73601 8.22193 8.29140 9.12361 9.74928 10.52117 11.36135 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020147 B = 0.002116 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.436406 B =13230.648698 C =14103.694718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.043 4.043 3 C 0.298 3.702 4 N -0.453 5.453 5 C 0.059 3.941 6 C 0.232 3.768 7 N -0.468 5.468 8 C 0.131 3.869 9 C -0.149 4.149 10 C -0.031 4.031 11 C 0.554 3.446 12 O -0.498 6.498 13 N -0.693 5.693 14 C 0.095 3.905 15 H 0.133 0.867 16 C -0.182 4.182 17 H 0.106 0.894 18 C 0.188 3.812 19 N -0.593 5.593 20 C -0.227 4.227 21 H 0.077 0.923 22 C -0.006 4.006 23 N -0.914 5.914 24 Si 0.914 3.086 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.156 3.844 29 C -0.183 4.183 30 H 0.102 0.898 31 N -0.586 5.586 32 H 0.427 0.573 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.174 0.826 39 H 0.149 0.851 40 H 0.396 0.604 41 H 0.030 0.970 42 H 0.090 0.910 43 H 0.255 0.745 44 H 0.028 0.972 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.661 -11.580 24.929 28.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.082 4.082 3 C 0.032 3.968 4 N -0.172 5.172 5 C -0.065 4.065 6 C -0.005 4.005 7 N -0.182 5.182 8 C -0.035 4.035 9 C -0.172 4.172 10 C -0.044 4.044 11 C 0.339 3.661 12 O -0.371 6.371 13 N -0.343 5.343 14 C -0.010 4.010 15 H 0.151 0.849 16 C -0.204 4.204 17 H 0.124 0.876 18 C 0.061 3.939 19 N -0.316 5.316 20 C -0.355 4.355 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.560 5.560 24 Si 0.744 3.256 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.205 1.205 28 C 0.029 3.971 29 C -0.204 4.204 30 H 0.120 0.880 31 N -0.201 5.201 32 H 0.267 0.733 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.190 0.810 39 H 0.167 0.833 40 H 0.231 0.769 41 H 0.048 0.952 42 H 0.108 0.892 43 H 0.065 0.935 44 H 0.046 0.954 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.045 -12.486 24.263 28.182 hybrid contribution 0.749 1.238 0.032 1.448 sum 7.794 -11.248 24.295 27.884 Atomic orbital electron populations 1.21721 0.92436 1.02619 1.03730 1.20217 0.97952 0.85693 1.04380 1.24050 0.89398 0.97675 0.85724 1.70328 1.24303 0.98327 1.24205 1.19229 0.98356 0.93720 0.95215 1.18891 0.99227 0.86926 0.95462 1.66195 1.19587 0.99837 1.32544 1.22490 0.96795 0.91542 0.92709 1.22203 0.97626 0.99878 0.97539 1.19711 0.97736 0.91128 0.95803 1.17873 0.82144 0.82761 0.83359 1.90864 1.40067 1.44934 1.61253 1.45280 1.48284 1.11727 1.28988 1.21902 0.97845 0.95315 0.85967 0.84910 1.25459 0.96857 1.02773 0.95268 0.87639 1.21668 0.91647 0.90923 0.89619 1.45127 1.38567 1.38635 1.09275 1.19003 1.30821 1.00273 0.85417 0.90486 1.24918 1.01564 0.96848 0.96981 1.69901 1.45943 1.20845 1.19343 0.86079 0.77763 0.80427 0.81346 1.21558 1.21663 1.20489 1.21129 0.91799 0.98552 0.85633 1.24253 1.00579 0.93893 1.01655 0.88010 1.42804 1.40733 1.08330 1.28199 0.73254 0.92569 0.90503 0.91293 0.87945 0.89688 0.80951 0.83309 0.76900 0.95171 0.89216 0.93502 0.95449 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.85 37.16 0.37 -0.60 16 2 C -0.04 -0.25 6.56 -27.88 -0.18 -0.44 16 3 C 0.30 2.97 7.37 -154.71 -1.14 1.83 16 4 N -0.45 -6.57 10.57 -8.07 -0.09 -6.66 16 5 C 0.06 0.84 6.85 -84.62 -0.58 0.26 16 6 C 0.23 2.74 8.46 -155.64 -1.32 1.42 16 7 N -0.47 -5.03 10.35 -12.30 -0.13 -5.16 16 8 C 0.13 1.09 11.14 -17.56 -0.20 0.90 16 9 C -0.15 -1.36 9.60 -39.03 -0.37 -1.73 16 10 C -0.03 -0.41 5.93 -104.45 -0.62 -1.03 16 11 C 0.55 8.88 7.79 -12.36 -0.10 8.78 16 12 O -0.50 -10.10 15.75 5.32 0.08 -10.02 16 13 N -0.69 -9.77 5.52 -54.78 -0.30 -10.07 16 14 C 0.10 1.65 5.93 -67.93 -0.40 1.25 16 15 H 0.13 2.64 7.40 -51.93 -0.38 2.26 16 16 C -0.18 -3.47 7.34 -87.42 -0.64 -4.11 16 17 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 18 C 0.19 4.59 5.76 -0.55 0.00 4.59 16 19 N -0.59 -15.28 3.38 -166.71 -0.56 -15.84 16 20 C -0.23 -6.33 10.35 -15.05 -0.16 -6.49 16 21 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 22 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 23 N -0.91 -27.00 10.86 55.49 0.60 -26.39 16 24 Si 0.91 21.99 29.56 -169.99 -5.03 16.96 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 C 0.16 3.29 7.04 -2.41 -0.02 3.27 16 29 C -0.18 -3.22 6.97 -89.29 -0.62 -3.85 16 30 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 31 N -0.59 -5.11 6.23 -9.43 -0.06 -5.17 16 32 H 0.43 2.13 8.96 -40.82 -0.37 1.76 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16 39 H 0.15 0.86 6.53 -52.49 -0.34 0.52 16 40 H 0.40 4.16 6.97 -40.82 -0.28 3.88 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 2.43 6.51 -51.93 -0.34 2.09 16 43 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -37.19 377.89 -11.77 -48.96 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.91 Total: 3.89 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -6.08 Total: 3.79 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: -0.53 Total: -69.29 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.19 -11.77 -48.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961336297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.942 kcal (2) G-P(sol) polarization free energy of solvation -37.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds