Wall clock time and date at job start Sat Apr 11 2020 06:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.30288 * 124.97499 * 2 1 4 4 C 1.34648 * 109.67103 * 179.82714 * 3 2 1 5 5 C 1.40834 * 107.26416 * 0.42943 * 4 3 2 6 6 N 1.32103 * 120.46723 * 179.74255 * 5 4 3 7 7 C 1.31726 * 121.95203 * 0.04105 * 6 5 4 8 8 C 1.38340 * 121.54462 * 359.95664 * 7 6 5 9 9 C 1.39644 * 119.37606 * 0.02562 * 8 7 6 10 10 C 1.47754 * 121.07327 * 180.02562 * 9 8 7 11 11 O 1.21566 * 120.00306 * 225.09259 * 10 9 8 12 12 N 1.34779 * 120.00219 * 45.08715 * 10 9 8 13 13 C 1.47162 * 120.70775 * 4.92963 * 12 10 9 14 14 C 1.54314 * 107.80798 * 132.67970 * 13 12 10 15 15 H 1.09004 * 112.53205 * 182.37514 * 14 13 12 16 16 C 1.54548 * 107.98264 * 306.73079 * 14 13 12 17 17 C 1.54284 * 104.84167 * 89.00995 * 16 14 13 18 18 C 1.54544 * 104.85347 * 0.02562 * 17 16 14 19 19 H 1.08999 * 112.68221 * 146.67663 * 18 17 16 20 20 C 1.47160 * 120.70993 * 185.19859 * 12 10 9 21 21 N 1.48302 * 107.10256 * 58.61211 * 14 13 12 22 22 C 1.36935 * 128.07739 * 106.61341 * 21 14 13 23 23 H 1.08000 * 120.00565 * 164.24769 * 22 21 14 24 24 C 1.38819 * 120.00102 * 344.25450 * 22 21 14 25 25 N 1.31613 * 119.99622 * 350.43266 * 24 22 21 26 26 Si 1.86799 * 120.00146 * 170.43515 * 24 22 21 27 27 H 1.48499 * 109.47382 * 59.99400 * 26 24 22 28 28 H 1.48493 * 109.47208 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.46740 * 299.99660 * 26 24 22 30 30 N 1.35986 * 124.97380 * 180.30388 * 2 1 3 31 31 H 0.97006 * 126.35442 * 0.02562 * 30 2 1 32 32 H 1.09005 * 109.47396 * 269.69664 * 1 2 3 33 33 H 1.09000 * 109.47519 * 149.69450 * 1 2 3 34 34 H 1.09009 * 109.47374 * 29.69474 * 1 2 3 35 35 H 1.08000 * 119.22758 * 179.97438 * 7 6 5 36 36 H 1.08000 * 120.31210 * 180.02562 * 8 7 6 37 37 H 1.09001 * 109.74761 * 252.38720 * 13 12 10 38 38 H 1.08997 * 109.74822 * 13.11497 * 13 12 10 39 39 H 1.08997 * 110.36334 * 207.85068 * 16 14 13 40 40 H 1.08997 * 110.36255 * 330.17427 * 16 14 13 41 41 H 1.08993 * 110.36336 * 241.16209 * 17 16 14 42 42 H 1.09005 * 110.35936 * 118.85669 * 17 16 14 43 43 H 1.08992 * 109.75604 * 346.89034 * 20 12 10 44 44 H 1.09006 * 109.75151 * 107.57291 * 20 12 10 45 45 H 0.97005 * 119.99828 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2537 1.0676 0.0000 4 6 3.5525 0.7122 0.0038 5 6 3.6007 -0.6953 -0.0037 6 7 4.7616 -1.3257 -0.0071 7 6 5.9076 -0.6763 -0.0029 8 6 5.9559 0.7063 0.0045 9 6 4.7637 1.4334 0.0081 10 6 4.7716 2.9109 0.0154 11 8 4.0316 3.5190 0.7641 12 7 5.5992 3.5845 -0.8079 13 6 6.4229 2.8691 -1.7955 14 6 6.2729 3.5944 -3.1492 15 1 6.8226 3.1008 -3.9507 16 6 4.7642 3.7120 -3.4629 17 6 4.3279 5.0416 -2.8133 18 6 5.6127 5.6070 -2.1667 19 1 5.6490 6.6962 -2.1867 20 6 5.7029 5.0506 -0.7344 21 7 6.7164 4.9948 -2.9452 22 6 7.8743 5.5852 -3.3760 23 1 7.9617 6.6616 -3.3828 24 6 8.9361 4.8001 -3.8044 25 7 8.9062 3.4970 -3.6225 26 14 10.4072 5.5933 -4.6387 27 1 11.0341 6.5704 -3.7128 28 1 11.3971 4.5461 -4.9970 29 1 9.9599 6.2941 -5.8693 30 7 2.2864 -1.1143 -0.0059 31 1 1.9758 -2.0333 -0.0111 32 1 -0.3634 -0.0054 1.0277 33 1 -0.3634 -0.8872 -0.5186 34 1 -0.3634 0.8928 -0.5091 35 1 6.8311 -1.2362 -0.0055 36 1 6.9067 1.2184 0.0074 37 1 7.4667 2.8803 -1.4817 38 1 6.0764 1.8398 -1.8876 39 1 4.6022 3.7451 -4.5403 40 1 4.2189 2.8776 -3.0219 41 1 3.5682 4.8610 -2.0530 42 1 3.9511 5.7284 -3.5714 43 1 4.8857 5.4480 -0.1326 44 1 6.6578 5.3305 -0.2893 45 1 9.6482 2.9484 -3.9215 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029402749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:03 Heat of formation + Delta-G solvation = 98.677115 kcal Electronic energy + Delta-G solvation = -30822.792752 eV Core-core repulsion = 26842.452119 eV Total energy + Delta-G solvation = -3980.340633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.48950 -40.06001 -38.44020 -37.54075 -33.91708 -33.54594 -32.48589 -31.65545 -31.41039 -30.33284 -29.23210 -28.22004 -26.32664 -24.37142 -23.85133 -23.20490 -22.85496 -21.22144 -20.30418 -19.63314 -18.82890 -18.14708 -17.49134 -17.09586 -16.08807 -16.02335 -15.52625 -15.30242 -14.85903 -14.71608 -14.48287 -13.75969 -13.73731 -13.64721 -13.46751 -13.05039 -12.95330 -12.83521 -12.69848 -12.41281 -12.21286 -11.76647 -11.63253 -11.61268 -11.18656 -11.00324 -10.94143 -10.87102 -10.76614 -10.34853 -10.08560 -9.83757 -9.72476 -9.61759 -9.53782 -9.10329 -8.88752 -8.68099 -8.44640 -8.03950 -6.83934 -5.86838 -3.20685 0.50945 1.16654 2.36543 2.65108 3.14431 3.35631 3.40960 3.41377 3.48497 3.85565 3.89677 4.30415 4.41369 4.56850 4.77062 4.87120 5.00158 5.13377 5.15231 5.22354 5.32276 5.46912 5.53370 5.69837 5.74214 5.76877 5.82577 5.90240 5.96180 6.02921 6.05813 6.16975 6.34461 6.42272 6.52824 6.59210 6.65434 6.67372 6.74827 6.92459 6.96922 6.97787 7.25778 7.46062 7.64725 7.69856 7.78278 8.04653 8.12629 8.66681 9.04268 9.66286 10.43979 11.26892 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017158 B = 0.003630 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.503929 B = 7711.881259 C = 8455.997484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.291 3.709 3 N -0.466 5.466 4 C 0.049 3.951 5 C 0.233 3.767 6 N -0.476 5.476 7 C 0.135 3.865 8 C -0.145 4.145 9 C -0.019 4.019 10 C 0.553 3.447 11 O -0.537 6.537 12 N -0.583 5.583 13 C 0.100 3.900 14 C 0.170 3.830 15 H 0.118 0.882 16 C -0.135 4.135 17 C -0.123 4.123 18 C 0.134 3.866 19 H 0.079 0.921 20 C 0.103 3.897 21 N -0.584 5.584 22 C -0.225 4.225 23 H 0.076 0.924 24 C -0.002 4.002 25 N -0.915 5.915 26 Si 0.912 3.088 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.286 1.286 30 N -0.587 5.587 31 H 0.426 0.574 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.173 0.827 36 H 0.155 0.845 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.045 -10.297 5.632 16.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.024 3.976 3 N -0.186 5.186 4 C -0.074 4.074 5 C -0.003 4.003 6 N -0.189 5.189 7 C -0.031 4.031 8 C -0.168 4.168 9 C -0.032 4.032 10 C 0.340 3.660 11 O -0.415 6.415 12 N -0.314 5.314 13 C -0.024 4.024 14 C 0.062 3.938 15 H 0.135 0.865 16 C -0.174 4.174 17 C -0.162 4.162 18 C 0.026 3.974 19 H 0.097 0.903 20 C -0.021 4.021 21 N -0.305 5.305 22 C -0.353 4.353 23 H 0.094 0.906 24 C -0.199 4.199 25 N -0.562 5.562 26 Si 0.742 3.258 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.212 1.212 30 N -0.203 5.203 31 H 0.266 0.734 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.190 0.810 36 H 0.172 0.828 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.461 -9.993 5.894 17.026 hybrid contribution 1.104 -0.225 -0.413 1.200 sum -11.357 -10.218 5.481 16.230 Atomic orbital electron populations 1.20408 0.83505 1.04991 1.04476 1.23818 0.95900 0.80287 0.97581 1.70213 1.00642 1.27135 1.20623 1.19182 0.92095 0.91049 1.05031 1.18862 0.86157 0.90830 1.04487 1.66182 0.96014 1.41475 1.15263 1.22501 0.94116 0.91318 0.95157 1.22332 0.98408 0.95371 1.00718 1.19642 0.90682 0.94468 0.98379 1.17945 0.80768 0.85927 0.81408 1.90748 1.40433 1.68876 1.41458 1.48127 1.40690 1.07809 1.34821 1.22882 0.94978 0.94136 0.90359 1.21905 0.90061 0.86982 0.94852 0.86482 1.22614 0.99040 0.96539 0.99215 1.22463 0.97535 0.97150 0.99087 1.21989 0.89161 0.96685 0.89574 0.90283 1.22404 1.01263 0.78872 0.99574 1.45163 1.17610 1.07476 1.60274 1.18975 0.88974 0.91034 1.36283 0.90634 1.24805 0.97466 0.95814 1.01839 1.69815 1.32258 1.03497 1.50591 0.86208 0.82048 0.78011 0.79509 1.21129 1.21614 1.21231 1.42675 1.03623 1.10333 1.63670 0.73428 0.89065 0.89973 0.88095 0.80986 0.82771 0.89551 0.92020 0.92826 0.93380 0.92454 0.92762 0.90532 0.91708 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.51 36.00 0.38 -0.11 16 2 C 0.29 3.45 8.08 -154.73 -1.25 2.19 16 3 N -0.47 -7.86 11.23 -8.07 -0.09 -7.95 16 4 C 0.05 0.86 6.94 -84.62 -0.59 0.27 16 5 C 0.23 3.47 8.46 -155.65 -1.32 2.15 16 6 N -0.48 -6.77 10.35 -12.30 -0.13 -6.89 16 7 C 0.13 1.72 11.14 -17.56 -0.20 1.53 16 8 C -0.15 -2.14 7.66 -39.02 -0.30 -2.43 16 9 C -0.02 -0.33 4.95 -104.45 -0.52 -0.85 16 10 C 0.55 11.15 7.33 -12.37 -0.09 11.06 16 11 O -0.54 -12.24 16.48 5.31 0.09 -12.16 16 12 N -0.58 -11.53 2.24 -172.39 -0.39 -11.92 16 13 C 0.10 2.01 4.41 -2.99 -0.01 1.99 16 14 C 0.17 3.74 3.12 -65.44 -0.20 3.54 16 15 H 0.12 2.90 6.42 -51.93 -0.33 2.56 16 16 C -0.13 -2.67 6.19 -25.25 -0.16 -2.83 16 17 C -0.12 -2.36 6.18 -25.25 -0.16 -2.51 16 18 C 0.13 2.73 4.32 -65.65 -0.28 2.45 16 19 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 20 C 0.10 2.05 5.92 -3.20 -0.02 2.03 16 21 N -0.58 -13.76 2.80 -152.34 -0.43 -14.19 16 22 C -0.22 -5.79 10.37 -15.06 -0.16 -5.94 16 23 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 24 C 0.00 -0.06 5.41 -17.43 -0.09 -0.15 16 25 N -0.92 -23.99 10.41 55.49 0.58 -23.42 16 26 Si 0.91 20.82 29.56 -169.99 -5.03 15.79 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 30 N -0.59 -6.48 6.23 -9.43 -0.06 -6.54 16 31 H 0.43 3.02 8.96 -40.82 -0.37 2.65 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 35 H 0.17 1.56 8.06 -52.49 -0.42 1.13 16 36 H 0.15 2.12 7.05 -52.49 -0.37 1.75 16 37 H 0.09 1.91 7.71 -51.93 -0.40 1.51 16 38 H 0.06 1.14 5.36 -51.93 -0.28 0.87 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.94 7.85 -51.93 -0.41 0.53 16 41 H 0.06 1.11 7.84 -51.93 -0.41 0.70 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.08 1.49 7.08 -51.93 -0.37 1.12 16 44 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 45 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 361.09 15.07 5.44 5.44 Total: -1.00 -33.26 361.09 -10.83 -44.09 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.86 Total: 5.36 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: -4.96 Total: 12.38 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -0.51 Total: -70.91 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.26 -10.83 -44.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029402749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.763 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds