Wall clock time and date at job start Sat Apr 11 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30726 * 126.27170 * 2 1 4 4 N 1.28646 * 110.34073 * 179.97438 * 3 2 1 5 5 C 1.32184 * 109.56794 * 359.97438 * 4 3 2 6 6 C 1.41049 * 133.25878 * 179.97438 * 5 4 3 7 7 C 1.35641 * 119.40266 * 179.79994 * 6 5 4 8 8 C 1.41813 * 119.59803 * 0.45546 * 7 6 5 9 9 C 1.47602 * 119.97969 * 179.79100 * 8 7 6 10 10 O 1.21593 * 119.99748 * 207.30338 * 9 8 7 11 11 N 1.34775 * 120.00033 * 27.29807 * 9 8 7 12 12 C 1.47346 * 125.53006 * 356.23313 * 11 9 8 13 13 C 1.54933 * 104.89374 * 156.56439 * 12 11 9 14 14 C 1.54803 * 101.50136 * 37.22816 * 13 12 11 15 15 H 1.09001 * 112.63448 * 85.34569 * 14 13 12 16 16 C 1.53266 * 109.74770 * 212.29038 * 14 13 12 17 17 N 1.46588 * 108.15615 * 95.76803 * 16 14 13 18 18 C 1.36929 * 125.30693 * 177.84971 * 17 16 14 19 19 H 1.08000 * 120.00268 * 0.02562 * 18 17 16 20 20 C 1.38820 * 120.00223 * 179.97438 * 18 17 16 21 21 N 1.31612 * 119.99478 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00235 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47297 * 59.99632 * 22 20 18 24 24 H 1.48493 * 109.47349 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46806 * 300.00250 * 22 20 18 26 26 C 1.46603 * 109.38736 * 357.88730 * 17 16 14 27 27 C 1.47215 * 125.52621 * 176.25032 * 11 9 8 28 28 H 1.09005 * 112.28806 * 56.22803 * 27 11 9 29 29 C 1.36499 * 120.03914 * 359.51282 * 8 7 6 30 30 N 1.35843 * 120.38294 * 0.25147 * 29 8 7 31 31 H 1.09005 * 109.47287 * 269.99887 * 1 2 3 32 32 H 1.09002 * 109.47455 * 30.00420 * 1 2 3 33 33 H 1.08997 * 109.46959 * 150.00183 * 1 2 3 34 34 H 1.08000 * 120.30078 * 359.97438 * 6 5 4 35 35 H 1.07998 * 120.19896 * 180.23872 * 7 6 5 36 36 H 1.08992 * 110.35855 * 37.70389 * 12 11 9 37 37 H 1.09001 * 110.34892 * 275.41566 * 12 11 9 38 38 H 1.09002 * 111.02523 * 155.29032 * 13 12 11 39 39 H 1.09004 * 111.01685 * 279.18090 * 13 12 11 40 40 H 1.08998 * 109.73604 * 215.44814 * 16 14 13 41 41 H 1.08999 * 109.73828 * 336.08156 * 16 14 13 42 42 H 0.97005 * 119.99849 * 179.97438 * 21 20 18 43 43 H 1.09005 * 109.91536 * 258.45776 * 26 17 16 44 44 H 1.08993 * 109.91712 * 137.17106 * 26 17 16 45 45 H 1.08002 * 119.80808 * 180.23815 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2804 1.0539 0.0000 4 7 3.5174 0.7008 0.0005 5 6 3.6013 -0.6183 0.0015 6 6 4.6878 -1.5178 0.0019 7 6 4.4471 -2.8527 0.0070 8 6 3.1093 -3.3233 0.0021 9 6 2.8378 -4.7741 0.0030 10 8 1.8083 -5.2002 -0.4838 11 7 3.7311 -5.6266 0.5432 12 6 5.0465 -5.2538 1.0926 13 6 5.3983 -6.3879 2.0878 14 6 4.8392 -7.6293 1.3512 15 1 5.5463 -8.0449 0.6333 16 6 4.3454 -8.6591 2.3733 17 7 2.9024 -8.4711 2.5505 18 6 2.0979 -9.2334 3.3546 19 1 2.5196 -10.0495 3.9225 20 6 0.7403 -8.9566 3.4408 21 7 0.2265 -7.9617 2.7491 22 14 -0.3571 -9.9960 4.5383 23 1 0.1175 -9.9043 5.9424 24 1 -1.7541 -9.4997 4.4540 25 1 -0.3072 -11.4111 4.0904 26 6 2.4548 -7.3403 1.7319 27 6 3.5511 -7.0813 0.6797 28 1 3.3425 -7.5634 -0.2754 29 6 2.0726 -2.4354 0.0023 30 7 2.3131 -1.0984 0.0020 31 1 -0.3634 0.0000 1.0277 32 1 -0.3634 0.8899 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 5.7021 -1.1471 0.0010 35 1 5.2693 -3.5529 0.0113 36 1 4.9829 -4.2985 1.6135 37 1 5.7894 -5.2038 0.2966 38 1 6.4768 -6.4673 2.2249 39 1 4.8943 -6.2402 3.0429 40 1 4.5429 -9.6662 2.0061 41 1 4.8558 -8.5078 3.3244 42 1 -0.7222 -7.7684 2.8090 43 1 2.3250 -6.4573 2.3578 44 1 1.5162 -7.5888 1.2368 45 1 1.0553 -2.7979 0.0024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075972977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:32 Heat of formation + Delta-G solvation = 127.539413 kcal Electronic energy + Delta-G solvation = -29925.538697 eV Core-core repulsion = 25946.449627 eV Total energy + Delta-G solvation = -3979.089069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.81314 -40.56981 -38.70121 -37.44503 -35.31185 -34.56750 -32.64542 -31.90871 -31.00895 -30.78771 -28.81566 -27.71863 -26.99419 -25.21369 -24.44562 -23.90461 -22.70098 -21.83296 -20.74874 -20.02522 -19.15439 -18.53830 -17.49748 -16.98643 -16.93782 -16.53923 -15.91396 -15.66835 -15.17871 -14.69236 -14.56767 -14.33750 -14.22127 -13.66860 -13.52637 -13.26276 -13.07879 -12.97721 -12.70939 -12.58416 -12.29974 -12.27638 -12.06445 -11.76875 -11.68851 -11.40694 -11.30472 -11.12400 -10.83221 -10.79752 -10.49772 -10.29613 -10.15064 -9.93600 -9.86383 -9.78438 -9.71193 -8.66257 -8.47886 -8.27661 -6.89472 -5.70009 -3.11669 0.20834 0.63965 1.88555 2.26856 2.75908 2.97353 3.32316 3.37685 3.42003 3.43765 3.74027 4.08321 4.17475 4.30732 4.38179 4.44209 4.45330 4.62916 4.74060 4.98694 5.00275 5.12568 5.14149 5.27177 5.36600 5.38687 5.47130 5.49849 5.54204 5.57957 5.67838 5.69415 5.74739 5.80993 5.90198 5.97035 6.08546 6.20072 6.40152 6.42422 6.51951 6.57805 6.77482 7.38605 7.55962 7.68278 7.85158 8.19966 8.26686 8.31705 9.17701 9.78614 10.39939 11.34779 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013928 B = 0.003220 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.851343 B = 8693.916012 C =10140.755516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.150 3.850 3 N -0.251 5.251 4 N -0.291 5.291 5 C 0.198 3.802 6 C -0.084 4.084 7 C -0.079 4.079 8 C -0.139 4.139 9 C 0.579 3.421 10 O -0.518 6.518 11 N -0.596 5.596 12 C 0.090 3.910 13 C -0.124 4.124 14 C -0.109 4.109 15 H 0.090 0.910 16 C 0.145 3.855 17 N -0.601 5.601 18 C -0.233 4.233 19 H 0.079 0.921 20 C -0.006 4.006 21 N -0.916 5.916 22 Si 0.914 3.086 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.165 3.835 27 C 0.115 3.885 28 H 0.087 0.913 29 C 0.135 3.865 30 N -0.393 5.393 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.025 0.975 41 H 0.027 0.973 42 H 0.253 0.747 43 H 0.020 0.980 44 H 0.097 0.903 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.608 10.872 -6.319 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.112 4.112 3 N -0.090 5.090 4 N -0.135 5.135 5 C -0.051 4.051 6 C -0.105 4.105 7 C -0.103 4.103 8 C -0.146 4.146 9 C 0.366 3.634 10 O -0.394 6.394 11 N -0.329 5.329 12 C -0.032 4.032 13 C -0.162 4.162 14 C -0.129 4.129 15 H 0.108 0.892 16 C 0.019 3.981 17 N -0.328 5.328 18 C -0.361 4.361 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.563 5.563 22 Si 0.744 3.256 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.039 3.961 27 C 0.012 3.988 28 H 0.105 0.895 29 C 0.010 3.990 30 N -0.073 5.073 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.180 0.820 35 H 0.181 0.819 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.043 0.957 41 H 0.044 0.956 42 H 0.064 0.936 43 H 0.038 0.962 44 H 0.115 0.885 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 9.093 12.350 -6.550 16.676 hybrid contribution -0.841 -1.770 0.662 2.068 sum 8.252 10.580 -5.888 14.652 Atomic orbital electron populations 1.20290 0.82729 1.05031 1.04586 1.25040 0.97129 0.80581 1.08458 1.74176 0.96590 1.23354 1.14906 1.74889 1.10896 1.06038 1.21696 1.22482 0.84997 0.92754 1.04870 1.20177 0.97258 0.90569 1.02537 1.21817 0.96523 0.95813 0.96166 1.19554 0.93161 0.94480 1.07409 1.17176 0.83212 0.83959 0.79056 1.90881 1.25294 1.77914 1.45289 1.48323 1.17124 1.08467 1.59026 1.22730 0.84630 0.99416 0.96469 1.22849 1.01119 0.93457 0.98753 1.22891 0.96187 0.96131 0.97651 0.89218 1.20983 0.86951 0.95229 0.94985 1.44135 1.01531 1.35197 1.51915 1.18984 0.89059 1.09320 1.18708 0.90356 1.24832 0.96874 0.98442 1.00122 1.69893 1.12171 1.30436 1.43832 0.86180 0.79821 0.79575 0.80047 1.21187 1.21559 1.21062 1.21669 0.95060 0.89792 0.89532 1.23067 0.97849 0.77498 1.00396 0.89479 1.21696 1.02042 0.79217 0.96055 1.43662 1.09137 1.06792 1.47734 0.89157 0.88225 0.89889 0.82013 0.81946 0.90266 0.91004 0.90028 0.89744 0.95728 0.95563 0.93585 0.96246 0.88506 0.79862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.40 36.01 0.37 -0.16 16 2 C 0.15 1.84 8.14 -154.12 -1.25 0.59 16 3 N -0.25 -3.70 12.18 32.97 0.40 -3.29 16 4 N -0.29 -4.39 12.29 31.19 0.38 -4.00 16 5 C 0.20 2.59 7.92 -155.95 -1.23 1.35 16 6 C -0.08 -0.82 10.09 -39.45 -0.40 -1.22 16 7 C -0.08 -0.76 7.91 -39.14 -0.31 -1.07 16 8 C -0.14 -1.74 5.66 -105.34 -0.60 -2.34 16 9 C 0.58 9.30 7.43 -12.44 -0.09 9.20 16 10 O -0.52 -10.36 16.79 5.28 0.09 -10.27 16 11 N -0.60 -9.01 2.85 -162.87 -0.46 -9.47 16 12 C 0.09 0.96 5.00 -2.56 -0.01 0.95 16 13 C -0.12 -1.48 6.23 -24.76 -0.15 -1.63 16 14 C -0.11 -1.61 3.91 -88.33 -0.35 -1.96 16 15 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 16 C 0.14 2.74 6.65 -3.86 -0.03 2.71 16 17 N -0.60 -14.74 3.37 -172.22 -0.58 -15.32 16 18 C -0.23 -6.31 10.25 -15.06 -0.15 -6.47 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 20 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 21 N -0.92 -26.72 10.17 55.49 0.56 -26.16 16 22 Si 0.91 21.79 29.55 -169.99 -5.02 16.76 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.17 3.92 4.87 -3.39 -0.02 3.90 16 27 C 0.11 2.06 3.86 -65.74 -0.25 1.81 16 28 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 29 C 0.14 1.66 10.43 -16.40 -0.17 1.49 16 30 N -0.39 -4.96 2.94 -59.37 -0.17 -5.13 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.16 1.14 4.57 -52.49 -0.24 0.90 16 36 H 0.08 0.74 6.18 -51.93 -0.32 0.42 16 37 H 0.07 0.55 7.22 -51.93 -0.37 0.17 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.23 7.88 -51.93 -0.41 0.82 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.03 0.49 7.74 -51.93 -0.40 0.09 16 42 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 43 H 0.02 0.51 7.94 -51.93 -0.41 0.10 16 44 H 0.10 2.73 6.22 -51.93 -0.32 2.41 16 45 H 0.18 2.08 7.81 -52.49 -0.41 1.67 16 LS Contribution 362.46 15.07 5.46 5.46 Total: -1.00 -35.25 362.46 -9.90 -45.16 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.82 Total: -0.62 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: -4.74 Total: 6.89 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: 0.13 Total: -63.38 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.25 -9.90 -45.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075972977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.694 kcal (2) G-P(sol) polarization free energy of solvation -35.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds