Wall clock time and date at job start Sat Apr 11 2020 06:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46699 * 2 1 4 4 H 1.08993 * 109.87862 * 54.13289 * 3 2 1 5 5 C 1.54326 * 110.01018 * 293.03285 * 3 2 1 6 6 H 1.09003 * 110.72109 * 336.86479 * 5 3 2 7 7 N 1.46501 * 110.72192 * 99.95518 * 5 3 2 8 8 C 1.34768 * 120.00237 * 205.00167 * 7 5 3 9 9 O 1.21546 * 120.00216 * 359.97438 * 8 7 5 10 10 C 1.47850 * 119.99765 * 180.02562 * 8 7 5 11 11 C 1.40600 * 120.28256 * 359.97438 * 10 8 7 12 12 N 1.30810 * 121.52386 * 180.02562 * 11 10 8 13 13 C 1.33760 * 121.79569 * 359.97438 * 12 11 10 14 14 N 1.33896 * 120.61716 * 180.02562 * 13 12 11 15 15 C 1.31330 * 119.84665 * 179.90550 * 14 13 12 16 16 C 1.39759 * 120.77541 * 0.09394 * 15 14 13 17 17 N 1.31312 * 120.55750 * 359.92693 * 16 15 14 18 18 C 1.33669 * 119.70506 * 0.02609 * 17 16 15 19 19 C 1.38908 * 120.27972 * 179.72572 * 10 8 7 20 20 C 1.55150 * 102.94562 * 218.32307 * 5 3 2 21 21 C 1.54689 * 101.67867 * 35.33379 * 20 5 3 22 22 N 1.47020 * 109.88233 * 175.15318 * 3 2 1 23 23 C 1.36938 * 125.64739 * 298.47577 * 22 3 2 24 24 H 1.08005 * 119.99480 * 347.82561 * 23 22 3 25 25 C 1.38808 * 120.00550 * 168.10310 * 23 22 3 26 26 N 1.31626 * 119.99543 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00543 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.47026 * 59.99992 * 27 25 23 29 29 H 1.48494 * 109.47425 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.47237 * 300.00440 * 27 25 23 31 31 H 1.09000 * 109.47495 * 305.44830 * 1 2 3 32 32 H 1.09005 * 109.47437 * 65.45110 * 1 2 3 33 33 H 1.08996 * 109.47122 * 185.44729 * 1 2 3 34 34 H 1.09000 * 109.47336 * 239.99825 * 2 1 3 35 35 H 1.09001 * 109.46966 * 119.99441 * 2 1 3 36 36 H 0.97010 * 119.99248 * 25.00321 * 7 5 3 37 37 H 1.08001 * 119.23222 * 0.02562 * 11 10 8 38 38 H 1.07995 * 119.61290 * 180.02562 * 15 14 13 39 39 H 1.07996 * 119.72699 * 179.97438 * 16 15 14 40 40 H 1.08005 * 120.99231 * 359.97438 * 19 10 8 41 41 H 1.09001 * 111.00651 * 153.57675 * 20 5 3 42 42 H 1.09007 * 111.00616 * 277.43099 * 20 5 3 43 43 H 1.09001 * 110.39799 * 204.36620 * 21 20 5 44 44 H 1.09000 * 110.23668 * 82.11083 * 21 20 5 45 45 H 0.96999 * 119.99985 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5972 1.9921 0.8306 5 6 1.6810 2.1295 -1.3345 6 1 1.5269 1.3896 -2.1200 7 7 0.4935 2.9735 -1.1801 8 6 -0.2789 3.2520 -2.2488 9 8 0.0100 2.8034 -3.3409 10 6 -1.4770 4.1042 -2.0930 11 6 -1.8163 4.6267 -0.8325 12 7 -2.8709 5.3828 -0.6669 13 6 -3.6790 5.6980 -1.6851 14 7 -4.7521 6.4743 -1.4889 15 6 -5.5343 6.7759 -2.4999 16 6 -5.2622 6.2939 -3.7832 17 7 -4.2164 5.5304 -4.0017 18 6 -3.4058 5.2113 -2.9879 19 6 -2.2740 4.3997 -3.1916 20 6 2.9349 2.9947 -1.6283 21 6 4.0702 2.0954 -1.0849 22 7 3.5054 1.4549 0.1168 23 6 4.2263 0.9588 1.1701 24 1 3.7255 0.6921 2.0892 25 6 5.6012 0.8039 1.0587 26 7 6.2122 1.1345 -0.0593 27 14 6.5845 0.1279 2.4958 28 1 6.0964 -1.2336 2.8328 29 1 8.0210 0.0616 2.1252 30 1 6.4180 1.0186 3.6723 31 1 -0.3634 0.5960 0.8372 32 1 -0.3634 0.4270 -0.9348 33 1 -0.3633 -1.0230 0.0976 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 0.2632 3.3318 -0.3085 37 1 -1.1918 4.3985 0.0185 38 1 -6.3986 7.4027 -2.3374 39 1 -5.9171 6.5521 -4.6022 40 1 -2.0343 4.0154 -4.1720 41 1 3.0488 3.1668 -2.6986 42 1 2.8946 3.9385 -1.0845 43 1 4.9389 2.6983 -0.8207 44 1 4.3411 1.3419 -1.8245 45 1 7.1729 1.0260 -0.1373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087605057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:49 Heat of formation + Delta-G solvation = 54.697552 kcal Electronic energy + Delta-G solvation = -29011.133813 eV Core-core repulsion = 25028.886083 eV Total energy + Delta-G solvation = -3982.247730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.83553 -41.28527 -39.67833 -38.87024 -36.16069 -35.73001 -34.37838 -33.59239 -33.12191 -32.30356 -30.76364 -28.35512 -27.17918 -26.40743 -26.00424 -24.07779 -23.74003 -22.71150 -21.95393 -21.46064 -20.32051 -19.50822 -19.02335 -18.69426 -17.62615 -17.33584 -16.80155 -16.67714 -16.19961 -16.01872 -15.83144 -15.67542 -15.59098 -15.33421 -14.75340 -14.47265 -14.30603 -13.98924 -13.92239 -13.72326 -13.53982 -13.24272 -13.03373 -12.87789 -12.85914 -12.67473 -12.58211 -12.21603 -12.07485 -12.04304 -11.97710 -11.84861 -11.53848 -11.35814 -11.16089 -10.65200 -10.60629 -10.36771 -10.04162 -9.92427 -8.82222 -7.82090 -5.19763 -1.26128 -0.92510 0.53788 1.21682 1.48816 1.51085 1.57092 1.83349 2.03111 2.37442 2.52515 2.81182 2.83756 2.92042 3.32975 3.36903 3.46294 3.55360 3.65684 3.76307 3.84225 3.91702 3.94031 4.20914 4.30861 4.33205 4.39475 4.43644 4.60797 4.63792 4.67170 4.75878 4.80662 4.86524 5.04771 5.13487 5.22361 5.23321 5.29450 5.46681 5.52340 5.60036 5.65335 5.76117 5.80421 6.26097 6.30857 6.39777 6.72468 7.04067 7.11733 7.79735 8.45371 9.27953 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025556 B = 0.002273 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.385282 B =12317.882454 C =12486.518476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.157 3.843 4 H 0.057 0.943 5 C 0.157 3.843 6 H 0.085 0.915 7 N -0.691 5.691 8 C 0.572 3.428 9 O -0.564 6.564 10 C -0.176 4.176 11 C 0.198 3.802 12 N -0.478 5.478 13 C 0.253 3.747 14 N -0.457 5.457 15 C 0.133 3.867 16 C 0.091 3.909 17 N -0.434 5.434 18 C 0.003 3.997 19 C 0.036 3.964 20 C -0.142 4.142 21 C 0.179 3.821 22 N -0.613 5.613 23 C -0.229 4.229 24 H 0.084 0.916 25 C -0.065 4.065 26 N -0.950 5.950 27 Si 0.974 3.026 28 H -0.279 1.279 29 H -0.299 1.299 30 H -0.275 1.275 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.036 0.964 35 H 0.049 0.951 36 H 0.414 0.586 37 H 0.204 0.796 38 H 0.235 0.765 39 H 0.234 0.766 40 H 0.163 0.837 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.046 0.954 44 H -0.008 1.008 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.009 11.229 -5.299 28.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.050 3.950 4 H 0.075 0.925 5 C 0.051 3.949 6 H 0.103 0.897 7 N -0.342 5.342 8 C 0.358 3.642 9 O -0.444 6.444 10 C -0.183 4.183 11 C 0.021 3.979 12 N -0.187 5.187 13 C 0.014 3.986 14 N -0.172 5.172 15 C -0.047 4.047 16 C -0.087 4.087 17 N -0.149 5.149 18 C -0.121 4.121 19 C 0.008 3.992 20 C -0.182 4.182 21 C 0.053 3.947 22 N -0.338 5.338 23 C -0.358 4.358 24 H 0.102 0.898 25 C -0.258 4.258 26 N -0.599 5.599 27 Si 0.802 3.198 28 H -0.205 1.205 29 H -0.226 1.226 30 H -0.201 1.201 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.253 0.747 37 H 0.220 0.780 38 H 0.251 0.749 39 H 0.250 0.750 40 H 0.180 0.820 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.064 0.936 44 H 0.010 0.990 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -25.628 11.105 -5.080 28.389 hybrid contribution 1.434 -0.823 0.045 1.654 sum -24.194 10.282 -5.035 26.766 Atomic orbital electron populations 1.21671 0.93909 1.01959 1.01830 1.21907 0.96391 0.97664 1.00648 1.21282 0.84580 0.94638 0.94458 0.92526 1.21742 0.83483 0.91989 0.97681 0.89735 1.45704 1.26003 1.50975 1.11512 1.17944 0.82209 0.79882 0.84162 1.90802 1.72907 1.53813 1.26849 1.20956 0.98130 1.03289 0.95939 1.23671 0.90891 0.87254 0.96083 1.67516 1.04698 1.14123 1.32372 1.20340 0.94136 0.95191 0.88907 1.68425 1.02634 1.10683 1.35469 1.25304 0.97492 0.93850 0.88029 1.25179 0.93246 0.90508 0.99732 1.68681 1.03771 1.10745 1.31654 1.20185 0.98161 1.01680 0.92109 1.21863 0.88354 0.88794 1.00192 1.23220 0.95385 0.98868 1.00703 1.21152 0.93968 0.92557 0.87017 1.44669 1.00694 1.68895 1.19497 1.19270 0.89708 1.34664 0.92134 0.89850 1.25656 0.98137 1.02350 0.99634 1.70131 1.08411 1.54487 1.26857 0.85225 0.77114 0.78557 0.78874 1.20489 1.22566 1.20134 0.91320 0.93182 0.92448 0.94489 0.93224 0.74705 0.77959 0.74861 0.75030 0.81967 0.91271 0.90511 0.93561 0.99030 0.94473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.65 71.98 0.69 -2.80 16 2 C -0.13 -4.39 5.43 30.60 0.17 -4.23 16 3 C 0.16 5.74 2.91 45.34 0.13 5.87 16 4 H 0.06 1.88 7.72 -2.39 -0.02 1.86 16 5 C 0.16 5.12 2.10 46.18 0.10 5.22 16 6 H 0.08 3.08 7.18 -2.39 -0.02 3.06 16 7 N -0.69 -16.73 4.91 -439.80 -2.16 -18.89 16 8 C 0.57 14.83 7.78 86.79 0.67 15.51 16 9 O -0.56 -19.01 16.03 -3.86 -0.06 -19.07 16 10 C -0.18 -3.78 5.89 -20.00 -0.12 -3.90 16 11 C 0.20 3.71 10.69 85.42 0.91 4.63 16 12 N -0.48 -11.14 10.39 -192.75 -2.00 -13.15 16 13 C 0.25 5.79 7.60 134.96 1.03 6.82 16 14 N -0.46 -8.78 10.55 -193.10 -2.04 -10.82 16 15 C 0.13 1.09 11.21 85.14 0.95 2.05 16 16 C 0.09 0.71 11.22 85.14 0.96 1.67 16 17 N -0.43 -7.55 10.46 -187.99 -1.97 -9.52 16 18 C 0.00 0.07 6.59 40.34 0.27 0.33 16 19 C 0.04 0.80 9.68 23.05 0.22 1.02 16 20 C -0.14 -5.25 6.76 31.91 0.22 -5.04 16 21 C 0.18 8.66 5.45 86.78 0.47 9.13 16 22 N -0.61 -29.54 3.13 -668.70 -2.09 -31.63 16 23 C -0.23 -12.15 9.72 84.03 0.82 -11.33 16 24 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 25 C -0.06 -3.58 5.47 84.86 0.46 -3.12 16 26 N -0.95 -56.34 10.48 21.65 0.23 -56.11 16 27 Si 0.97 44.88 29.55 68.60 2.03 46.91 16 28 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 29 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 30 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 32 H 0.05 1.28 7.48 -2.38 -0.02 1.26 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.04 1.42 8.03 -2.39 -0.02 1.40 16 35 H 0.05 1.88 7.85 -2.39 -0.02 1.86 16 36 H 0.41 7.38 6.40 -92.70 -0.59 6.79 16 37 H 0.20 2.37 6.38 -2.91 -0.02 2.36 16 38 H 0.24 -0.65 8.06 -2.91 -0.02 -0.67 16 39 H 0.23 -0.67 8.06 -2.91 -0.02 -0.69 16 40 H 0.16 3.61 7.70 -2.91 -0.02 3.59 16 41 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 43 H 0.05 2.53 6.75 -2.39 -0.02 2.52 16 44 H -0.01 -0.45 8.11 -2.39 -0.02 -0.47 16 45 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -78.84 373.38 0.33 -78.51 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.44 Total: 11.93 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 7.95 Total: 21.83 kcal Atomic # 7 Polarization: -130.08 SS G_CDS: -10.03 Total: -140.11 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.06 Total: -19.07 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -78.84 0.33 -78.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087605057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.205 kcal (2) G-P(sol) polarization free energy of solvation -78.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds