Wall clock time and date at job start Sat Apr 11 2020 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 H 1.09000 * 109.99916 * 305.73102 * 3 2 1 5 5 C 1.54340 * 109.99273 * 184.69906 * 3 2 1 6 6 H 1.09000 * 110.66494 * 337.04632 * 5 3 2 7 7 N 1.46499 * 110.85229 * 100.19447 * 5 3 2 8 8 C 1.34775 * 120.00280 * 200.14659 * 7 5 3 9 9 O 1.21482 * 119.99509 * 0.02562 * 8 7 5 10 10 C 1.48429 * 120.00111 * 180.02562 * 8 7 5 11 11 N 1.33487 * 119.22342 * 359.72902 * 10 8 7 12 12 N 1.28918 * 122.02924 * 179.70081 * 11 10 8 13 13 C 1.33820 * 119.73976 * 0.56533 * 12 11 10 14 14 C 1.40335 * 121.77957 * 179.74012 * 13 12 11 15 15 C 1.36183 * 119.62217 * 179.97438 * 14 13 12 16 16 C 1.39450 * 121.07592 * 0.02562 * 15 14 13 17 17 C 1.36134 * 121.01157 * 359.97438 * 16 15 14 18 18 C 1.40515 * 119.56112 * 0.02562 * 17 16 15 19 19 N 1.32064 * 119.21866 * 180.02562 * 10 8 7 20 20 C 1.55154 * 103.01909 * 218.66645 * 5 3 2 21 21 C 1.54915 * 101.58149 * 35.30574 * 20 5 3 22 22 N 1.47013 * 109.88458 * 66.82841 * 3 2 1 23 23 C 1.36939 * 125.64991 * 298.39848 * 22 3 2 24 24 H 1.07998 * 119.99994 * 325.75796 * 23 22 3 25 25 C 1.38811 * 120.00056 * 145.75910 * 23 22 3 26 26 N 1.31621 * 120.00421 * 339.04666 * 25 23 22 27 27 Si 1.86797 * 119.99867 * 159.04287 * 25 23 22 28 28 H 1.48501 * 109.47383 * 179.97438 * 27 25 23 29 29 H 1.48491 * 109.47485 * 300.00418 * 27 25 23 30 30 H 1.48506 * 109.47017 * 60.00277 * 27 25 23 31 31 H 1.09008 * 109.47223 * 51.18114 * 1 2 3 32 32 H 1.09004 * 109.47139 * 171.17725 * 1 2 3 33 33 H 1.08992 * 109.47208 * 291.18083 * 1 2 3 34 34 H 1.09008 * 109.46903 * 240.00295 * 2 1 3 35 35 H 1.08999 * 109.47326 * 120.00318 * 2 1 3 36 36 H 0.96999 * 119.99485 * 20.15137 * 7 5 3 37 37 H 1.07998 * 120.18423 * 0.02562 * 14 13 12 38 38 H 1.07996 * 119.46334 * 180.02562 * 15 14 13 39 39 H 1.08001 * 119.49246 * 179.97438 * 16 15 14 40 40 H 1.07996 * 120.22311 * 180.02562 * 17 16 15 41 41 H 1.08993 * 111.00570 * 277.22644 * 20 5 3 42 42 H 1.09000 * 111.03428 * 153.39530 * 20 5 3 43 43 H 1.08995 * 110.36116 * 204.14918 * 21 20 5 44 44 H 1.09001 * 110.46109 * 81.87990 * 21 20 5 45 45 H 0.97003 * 119.99485 * 353.68314 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6003 1.9933 -0.8315 5 6 3.5787 1.4582 -0.1188 6 1 4.0005 0.5125 0.2217 7 7 3.9926 1.7425 -1.4951 8 6 5.2318 1.4106 -1.9083 9 8 6.0053 0.8754 -1.1397 10 6 5.6512 1.6992 -3.3026 11 7 4.7869 2.2830 -4.1356 12 7 5.0959 2.5632 -5.3555 13 6 6.3129 2.2559 -5.8194 14 6 6.6927 2.5364 -7.1409 15 6 7.9431 2.2050 -7.5667 16 6 8.8555 1.5894 -6.7104 17 6 8.5238 1.3013 -5.4219 18 6 7.2427 1.6282 -4.9461 19 7 6.8689 1.3670 -3.6913 20 6 3.9906 2.6157 0.8286 21 6 2.9392 2.4820 1.9584 22 7 1.6938 2.0952 1.2710 23 6 0.4247 2.3040 1.7413 24 1 -0.3790 2.5148 1.0514 25 6 0.1713 2.2446 3.1048 26 7 1.0006 1.6038 3.9011 27 14 -1.3467 3.0741 3.8096 28 1 -1.3876 2.8653 5.2793 29 1 -1.2966 4.5291 3.5171 30 1 -2.5632 2.4868 3.1927 31 1 -0.3634 0.6442 -0.8007 32 1 -0.3634 -1.0155 -0.1576 33 1 -0.3633 0.3713 0.9582 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.3747 2.1696 -2.1088 37 1 5.9976 3.0132 -7.8160 38 1 8.2328 2.4225 -8.5841 39 1 9.8403 1.3373 -7.0751 40 1 9.2406 0.8247 -4.7697 41 1 3.9053 3.5799 0.3275 42 1 4.9993 2.4659 1.2138 43 1 2.8095 3.4354 2.4706 44 1 3.2374 1.7092 2.6669 45 1 1.7378 1.0964 3.5266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087660952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:53 Heat of formation + Delta-G solvation = 87.483666 kcal Electronic energy + Delta-G solvation = -28978.208884 eV Core-core repulsion = 24997.382867 eV Total energy + Delta-G solvation = -3980.826017 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.44987 -39.88522 -38.55674 -37.81922 -35.70500 -34.34549 -32.74569 -32.45199 -31.84794 -31.41424 -28.72738 -27.35479 -26.53200 -25.88508 -24.29352 -23.11619 -22.20047 -21.53869 -20.33217 -19.97550 -19.72046 -19.11699 -17.71499 -17.30078 -16.64356 -16.47468 -16.12501 -15.52938 -14.91557 -14.75284 -14.61677 -14.29573 -13.86637 -13.59532 -13.47313 -13.18807 -13.02270 -12.90644 -12.85433 -12.56491 -12.43009 -12.35509 -12.09915 -11.95735 -11.58548 -11.06187 -10.93851 -10.75468 -10.52690 -10.37416 -10.16163 -10.14061 -10.11115 -10.01977 -9.83898 -9.73499 -9.37771 -9.31341 -8.83618 -8.38657 -6.84079 -6.00048 -3.30797 -0.77578 -0.36357 1.10711 1.83640 2.48223 2.76093 3.02329 3.37265 3.42472 3.49369 3.52409 3.70058 3.71630 3.96646 4.11166 4.37188 4.54861 4.57180 4.64212 4.92025 5.11382 5.15404 5.30318 5.30717 5.35516 5.38870 5.45093 5.58954 5.68812 5.88912 5.95647 6.01953 6.04242 6.18830 6.27483 6.35847 6.39668 6.50623 6.62554 6.69763 6.79535 6.94166 7.05946 7.13442 7.39361 7.43248 7.79619 7.96285 8.08405 8.53159 9.02463 9.79070 10.40916 11.22999 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026747 B = 0.002266 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.581435 B =12355.504362 C =12643.540657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.155 3.845 4 H 0.040 0.960 5 C 0.134 3.866 6 H 0.097 0.903 7 N -0.688 5.688 8 C 0.585 3.415 9 O -0.501 6.501 10 C 0.224 3.776 11 N -0.233 5.233 12 N -0.139 5.139 13 C 0.018 3.982 14 C -0.066 4.066 15 C -0.091 4.091 16 C -0.072 4.072 17 C -0.086 4.086 18 C 0.133 3.867 19 N -0.395 5.395 20 C -0.145 4.145 21 C 0.141 3.859 22 N -0.588 5.588 23 C -0.323 4.323 24 H 0.058 0.942 25 C -0.021 4.021 26 N -0.912 5.912 27 Si 1.067 2.933 28 H -0.286 1.286 29 H -0.293 1.293 30 H -0.292 1.292 31 H 0.038 0.962 32 H 0.028 0.972 33 H 0.091 0.909 34 H 0.038 0.962 35 H 0.057 0.943 36 H 0.411 0.589 37 H 0.152 0.848 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.152 0.848 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.032 0.968 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.714 0.772 -24.061 28.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C 0.048 3.952 4 H 0.058 0.942 5 C 0.030 3.970 6 H 0.115 0.885 7 N -0.340 5.340 8 C 0.364 3.636 9 O -0.372 6.372 10 C -0.049 4.049 11 N -0.094 5.094 12 N -0.002 5.002 13 C -0.115 4.115 14 C -0.088 4.088 15 C -0.112 4.112 16 C -0.095 4.095 17 C -0.106 4.106 18 C -0.007 4.007 19 N -0.117 5.117 20 C -0.184 4.184 21 C 0.016 3.984 22 N -0.314 5.314 23 C -0.452 4.452 24 H 0.075 0.925 25 C -0.225 4.225 26 N -0.551 5.551 27 Si 0.897 3.103 28 H -0.211 1.211 29 H -0.220 1.220 30 H -0.219 1.219 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.110 0.890 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.247 0.753 37 H 0.169 0.831 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.170 0.830 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.050 0.950 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.501 0.923 -21.525 25.426 hybrid contribution 1.328 -0.434 -2.173 2.584 sum 14.830 0.489 -23.699 27.960 Atomic orbital electron populations 1.21846 0.95529 0.98770 1.04242 1.21869 0.97192 0.97409 0.99655 1.21257 0.89132 0.92629 0.92193 0.94224 1.22266 0.96444 0.99417 0.78864 0.88518 1.45899 1.13248 1.60242 1.14583 1.16961 0.83149 0.80242 0.83254 1.90830 1.52090 1.41299 1.52985 1.24545 0.88156 0.94589 0.97596 1.73986 1.28566 1.08426 0.98406 1.74514 1.12997 1.07806 1.04871 1.21032 0.93669 0.99345 0.97460 1.20830 0.97194 0.98355 0.92428 1.21254 0.92776 0.96243 1.00894 1.21279 1.00401 0.95054 0.92734 1.20957 0.93645 0.99454 0.96495 1.19777 0.96025 0.95227 0.89626 1.69122 1.15601 1.12871 1.14122 1.23209 0.99572 0.97709 0.97930 1.21598 0.85426 0.98585 0.92834 1.44425 1.01886 1.65714 1.19376 1.19528 0.84866 1.47609 0.93148 0.92466 1.26001 1.03846 0.98822 0.93789 1.70758 1.17596 1.28601 1.38102 0.83491 0.74727 0.75904 0.76193 1.21127 1.21982 1.21856 0.94256 0.95272 0.89014 0.94353 0.92469 0.75286 0.83050 0.83653 0.83595 0.82989 0.91433 0.91392 0.93212 0.95010 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.15 37.16 0.34 -2.60 16 2 C -0.12 -2.41 5.46 -26.73 -0.15 -2.56 16 3 C 0.15 3.14 2.99 -66.95 -0.20 2.94 16 4 H 0.04 0.80 7.68 -51.93 -0.40 0.40 16 5 C 0.13 2.46 2.76 -66.09 -0.18 2.28 16 6 H 0.10 1.88 7.40 -51.93 -0.38 1.49 16 7 N -0.69 -11.04 5.19 -52.78 -0.27 -11.31 16 8 C 0.58 9.87 7.85 -12.06 -0.09 9.77 16 9 O -0.50 -9.85 16.59 5.38 0.09 -9.76 16 10 C 0.22 3.40 7.65 -156.57 -1.20 2.21 16 11 N -0.23 -3.30 10.72 32.10 0.34 -2.95 16 12 N -0.14 -1.75 11.68 32.28 0.38 -1.37 16 13 C 0.02 0.18 6.68 -84.71 -0.57 -0.38 16 14 C -0.07 -0.41 10.00 -39.53 -0.40 -0.80 16 15 C -0.09 -0.33 9.95 -39.87 -0.40 -0.72 16 16 C -0.07 -0.28 9.95 -39.89 -0.40 -0.68 16 17 C -0.09 -0.62 10.01 -39.48 -0.40 -1.01 16 18 C 0.13 1.48 6.61 -84.77 -0.56 0.92 16 19 N -0.39 -5.72 10.22 -8.99 -0.09 -5.81 16 20 C -0.14 -2.75 6.77 -24.58 -0.17 -2.91 16 21 C 0.14 3.23 5.81 -2.53 -0.01 3.21 16 22 N -0.59 -14.15 2.82 -162.57 -0.46 -14.60 16 23 C -0.32 -8.55 7.01 -15.06 -0.11 -8.66 16 24 H 0.06 1.53 7.66 -52.49 -0.40 1.13 16 25 C -0.02 -0.57 5.23 -17.43 -0.09 -0.66 16 26 N -0.91 -26.81 13.14 55.49 0.73 -26.08 16 27 Si 1.07 24.81 29.97 -169.99 -5.09 19.72 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 30 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 31 H 0.04 0.74 8.12 -51.92 -0.42 0.32 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.09 2.15 5.69 -51.93 -0.30 1.86 16 34 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.41 5.98 7.62 -40.82 -0.31 5.67 16 37 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 38 H 0.15 0.05 8.06 -52.49 -0.42 -0.37 16 39 H 0.15 0.10 8.06 -52.49 -0.42 -0.32 16 40 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.03 0.78 6.68 -51.93 -0.35 0.44 16 45 H 0.27 8.02 6.19 -40.82 -0.25 7.77 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -33.09 373.62 -9.15 -42.24 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.84 Total: 3.97 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -4.57 Total: 0.33 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: 0.63 Total: -62.13 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.09 Total: 19.72 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.09 -9.15 -42.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087660952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.721 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds