Wall clock time and date at job start Sat Apr 11 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30059 * 124.94280 * 2 1 4 4 C 1.35770 * 109.43413 * 180.02562 * 3 2 1 5 5 C 1.39490 * 133.74442 * 179.97438 * 4 3 2 6 6 C 1.39666 * 118.05630 * 180.02562 * 5 4 3 7 7 C 1.47684 * 120.38702 * 180.27974 * 6 5 4 8 8 O 1.21579 * 119.99749 * 359.71966 * 7 6 5 9 9 N 1.34777 * 120.00420 * 179.72354 * 7 6 5 10 10 C 1.46498 * 120.00161 * 179.97438 * 9 7 6 11 11 H 1.09005 * 110.56219 * 36.95037 * 10 9 7 12 12 C 1.54854 * 110.62617 * 160.02716 * 10 9 7 13 13 C 1.55840 * 103.44569 * 118.49087 * 12 10 9 14 14 H 1.08996 * 115.56196 * 158.80933 * 13 12 10 15 15 C 1.55846 * 105.74066 * 287.99048 * 13 12 10 16 16 C 1.57713 * 103.12616 * 70.91004 * 15 13 12 17 17 C 1.55848 * 110.62885 * 274.05556 * 10 9 7 18 18 H 1.08996 * 115.56171 * 82.69178 * 17 10 9 19 19 N 1.50236 * 101.05013 * 208.57679 * 17 10 9 20 20 C 1.36945 * 130.83265 * 233.98435 * 19 17 10 21 21 H 1.07992 * 120.00075 * 0.02562 * 20 19 17 22 22 C 1.38815 * 119.99722 * 179.97438 * 20 19 17 23 23 N 1.31616 * 119.99994 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99735 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47360 * 90.00289 * 24 22 20 26 26 H 1.48506 * 109.47095 * 209.99954 * 24 22 20 27 27 H 1.48503 * 109.47443 * 330.00054 * 24 22 20 28 28 C 1.39985 * 119.22952 * 0.02562 * 6 5 4 29 29 N 1.31382 * 121.16425 * 0.02562 * 28 6 5 30 30 C 1.32542 * 121.79044 * 359.97438 * 29 28 6 31 31 N 1.36162 * 124.94375 * 180.02562 * 2 1 3 32 32 H 0.97001 * 126.24108 * 359.97438 * 31 2 1 33 33 H 1.09002 * 109.46888 * 89.97906 * 1 2 3 34 34 H 1.09001 * 109.47041 * 209.97352 * 1 2 3 35 35 H 1.08999 * 109.47727 * 329.97862 * 1 2 3 36 36 H 1.08004 * 120.97102 * 0.03669 * 5 4 3 37 37 H 0.96997 * 119.99666 * 0.02562 * 9 7 6 38 38 H 1.08998 * 110.62467 * 236.97545 * 12 10 9 39 39 H 1.08998 * 110.62697 * 359.97438 * 12 10 9 40 40 H 1.09003 * 110.62565 * 190.50125 * 15 13 12 41 41 H 1.08999 * 110.62464 * 313.52020 * 15 13 12 42 42 H 1.08999 * 111.90510 * 242.53946 * 16 15 13 43 43 H 1.08999 * 110.06559 * 119.02122 * 16 15 13 44 44 H 0.96998 * 119.99946 * 179.97438 * 23 22 20 45 45 H 1.08004 * 119.41704 * 180.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2519 1.0661 0.0000 4 6 3.5602 0.7031 -0.0006 5 6 4.7590 1.4162 -0.0013 6 6 5.9537 0.6928 -0.0023 7 6 7.2526 1.3956 0.0032 8 8 7.2862 2.6109 0.0034 9 7 8.4008 0.6898 0.0078 10 6 9.6892 1.3869 0.0126 11 1 9.6354 2.2866 0.6257 12 6 10.8153 0.4487 0.5122 13 6 11.7817 0.3612 -0.7072 14 1 12.8028 0.0570 -0.4771 15 6 11.0442 -0.5083 -1.7696 16 6 9.8834 0.4381 -2.2638 17 6 10.1287 1.7386 -1.4407 18 1 9.6938 2.6474 -1.8566 19 7 11.6243 1.7333 -1.2985 20 6 12.5569 2.6861 -1.6112 21 1 12.2444 3.6287 -2.0357 22 6 13.9037 2.4407 -1.3816 23 7 14.2844 1.2921 -0.8639 24 14 15.1757 3.7406 -1.8075 25 1 15.3920 4.6248 -0.6342 26 1 16.4550 3.0806 -2.1723 27 1 14.6916 4.5500 -2.9547 28 6 5.9057 -0.7062 -0.0031 29 7 4.7588 -1.3471 -0.0034 30 6 3.5997 -0.7043 -0.0025 31 7 2.2869 -1.1161 -0.0005 32 1 1.9741 -2.0343 -0.0006 33 1 -0.3633 0.0004 -1.0277 34 1 -0.3633 -0.8902 0.5134 35 1 -0.3634 0.8897 0.5141 36 1 4.7632 2.4963 -0.0009 37 1 8.3740 -0.2798 0.0071 38 1 11.3226 0.8827 1.3738 39 1 10.4150 -0.5352 0.7568 40 1 11.7195 -0.7765 -2.5821 41 1 10.6223 -1.4015 -1.3089 42 1 8.8995 0.0240 -2.0435 43 1 9.9889 0.6334 -3.3309 44 1 15.2256 1.1205 -0.7038 45 1 6.8277 -1.2687 -0.0034 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095515934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:57 Heat of formation + Delta-G solvation = 102.351133 kcal Electronic energy + Delta-G solvation = -29135.405170 eV Core-core repulsion = 25155.223854 eV Total energy + Delta-G solvation = -3980.181315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.75548 -40.20463 -38.87851 -37.76866 -34.12104 -33.93835 -32.40497 -31.90695 -31.60212 -29.31195 -29.03127 -28.54903 -27.31884 -24.59880 -23.86672 -23.28915 -21.76771 -21.32359 -20.75908 -19.52668 -18.76292 -18.65714 -18.17057 -17.06177 -16.57696 -16.36029 -16.28796 -15.25270 -15.04397 -14.79066 -14.25715 -14.07554 -13.97585 -13.93282 -13.71225 -13.63134 -13.30798 -13.04667 -12.46632 -12.31430 -12.21810 -11.74227 -11.50361 -11.47984 -11.39317 -11.06339 -10.88926 -10.87394 -10.80409 -10.20171 -10.09350 -10.04070 -9.77099 -9.48815 -9.40205 -9.24500 -9.20487 -8.92807 -8.83307 -8.51493 -6.90231 -5.71563 -3.09354 0.42930 0.55767 2.06764 2.30496 2.89979 3.20185 3.41374 3.46562 3.47985 3.64201 3.69981 3.94806 4.25770 4.46325 4.56461 4.58802 4.70272 4.78684 4.89177 5.06945 5.22053 5.27478 5.39797 5.43860 5.54822 5.75295 5.79856 5.81469 5.86649 5.89897 6.09023 6.13290 6.14793 6.30205 6.32966 6.54863 6.59837 6.65675 6.66037 6.80496 6.96711 7.00172 7.27532 7.29522 7.44412 7.53636 7.70779 7.81826 8.17942 8.40747 9.11864 9.74336 10.54514 11.38004 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.032176 B = 0.002248 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.992705 B =12453.074893 C =12896.509782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.294 3.706 3 N -0.476 5.476 4 C -0.004 4.004 5 C 0.044 3.956 6 C -0.191 4.191 7 C 0.562 3.438 8 O -0.534 6.534 9 N -0.704 5.704 10 C 0.128 3.872 11 H 0.085 0.915 12 C -0.140 4.140 13 C 0.152 3.848 14 H 0.154 0.846 15 C -0.135 4.135 16 C -0.134 4.134 17 C 0.128 3.872 18 H 0.085 0.915 19 N -0.589 5.589 20 C -0.208 4.208 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.924 5.924 24 Si 0.917 3.083 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.173 3.827 29 N -0.484 5.484 30 C 0.254 3.746 31 N -0.586 5.586 32 H 0.428 0.572 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.157 0.843 37 H 0.394 0.606 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.254 0.746 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.129 -9.594 3.008 27.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.026 3.974 3 N -0.197 5.197 4 C -0.124 4.124 5 C 0.017 3.983 6 C -0.199 4.199 7 C 0.348 3.652 8 O -0.411 6.411 9 N -0.355 5.355 10 C 0.022 3.978 11 H 0.103 0.897 12 C -0.180 4.180 13 C 0.046 3.954 14 H 0.171 0.829 15 C -0.174 4.174 16 C -0.173 4.173 17 C 0.019 3.981 18 H 0.103 0.897 19 N -0.310 5.310 20 C -0.336 4.336 21 H 0.097 0.903 22 C -0.209 4.209 23 N -0.572 5.572 24 Si 0.748 3.252 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.208 1.208 28 C 0.004 3.996 29 N -0.197 5.197 30 C 0.018 3.982 31 N -0.201 5.201 32 H 0.268 0.732 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.174 0.826 37 H 0.229 0.771 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -25.078 -8.581 2.979 26.672 hybrid contribution 0.708 -0.352 -0.251 0.829 sum -24.370 -8.933 2.729 26.099 Atomic orbital electron populations 1.20443 0.83287 1.05139 1.04702 1.23749 0.95868 0.80271 0.97516 1.70470 1.00332 1.27450 1.21424 1.19566 0.92809 0.91581 1.08411 1.20872 0.87338 1.01407 0.88725 1.20803 0.94695 0.94849 1.09565 1.17769 0.83186 0.87098 0.77195 1.90802 1.87280 1.13150 1.49875 1.46162 1.05975 1.09716 1.73680 1.22715 0.79844 0.95480 0.99738 0.89716 1.23287 0.96736 0.96923 1.01060 1.23755 0.99204 0.84355 0.88107 0.82901 1.23514 0.96936 0.96545 1.00407 1.23419 0.96877 0.97665 0.99372 1.23169 0.86398 0.95764 0.92745 0.89659 1.46472 0.98971 1.14170 1.71366 1.19065 0.85977 0.94527 1.34049 0.90289 1.24698 0.96723 0.97553 1.01876 1.69431 1.15025 1.22649 1.50110 0.86024 0.80884 0.80356 0.77960 1.21662 1.21727 1.20772 1.22755 0.94368 0.90523 0.91967 1.66382 0.95778 1.40548 1.16988 1.19065 0.86144 0.91259 1.01735 1.42707 1.03669 1.10627 1.63071 0.73192 0.88890 0.89792 0.88054 0.82571 0.77090 0.91432 0.92645 0.92436 0.93761 0.92821 0.93108 0.93588 0.81246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.23 10.51 36.01 0.38 0.15 16 2 C 0.29 2.34 8.08 -154.75 -1.25 1.09 16 3 N -0.48 -5.63 11.29 -8.21 -0.09 -5.73 16 4 C 0.00 -0.05 7.23 -84.69 -0.61 -0.66 16 5 C 0.04 0.59 9.75 -38.58 -0.38 0.21 16 6 C -0.19 -2.45 5.89 -104.85 -0.62 -3.07 16 7 C 0.56 8.61 7.77 -12.40 -0.10 8.52 16 8 O -0.53 -10.23 16.13 5.30 0.09 -10.14 16 9 N -0.70 -10.08 3.55 -52.38 -0.19 -10.26 16 10 C 0.13 2.33 3.08 -65.43 -0.20 2.13 16 11 H 0.08 1.73 7.70 -51.93 -0.40 1.34 16 12 C -0.14 -2.57 6.22 -24.24 -0.15 -2.72 16 13 C 0.15 3.35 4.67 -62.80 -0.29 3.06 16 14 H 0.15 3.87 5.52 -51.93 -0.29 3.58 16 15 C -0.13 -2.53 6.58 -22.63 -0.15 -2.68 16 16 C -0.13 -2.42 6.48 -22.63 -0.15 -2.57 16 17 C 0.13 2.66 5.30 -62.80 -0.33 2.33 16 18 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 19 N -0.59 -14.52 2.99 -145.82 -0.44 -14.96 16 20 C -0.21 -5.71 10.59 -15.05 -0.16 -5.87 16 21 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.92 -26.00 10.46 55.49 0.58 -25.42 16 24 Si 0.92 22.04 29.55 -169.99 -5.02 17.01 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 28 C 0.17 1.89 10.69 -17.09 -0.18 1.71 16 29 N -0.48 -5.65 10.36 -11.96 -0.12 -5.78 16 30 C 0.25 2.93 8.45 -155.63 -1.31 1.62 16 31 N -0.59 -4.59 6.20 -9.44 -0.06 -4.65 16 32 H 0.43 1.86 8.96 -40.82 -0.37 1.50 16 33 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 34 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 35 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.16 2.08 7.72 -52.48 -0.41 1.67 16 37 H 0.39 4.44 6.06 -40.82 -0.25 4.20 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.06 0.83 7.38 -51.93 -0.38 0.45 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.04 0.69 7.85 -51.93 -0.41 0.28 16 42 H 0.05 0.82 6.47 -51.93 -0.34 0.49 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.17 1.36 6.39 -52.48 -0.34 1.03 16 LS Contribution 365.81 15.07 5.51 5.51 Total: -1.00 -34.39 365.81 -11.01 -45.40 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.67 Total: 6.24 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -5.60 Total: 2.77 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: -0.32 Total: -66.80 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.39 -11.01 -45.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095515934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.751 kcal (2) G-P(sol) polarization free energy of solvation -34.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds