Wall clock time and date at job start Sat Apr 11 2020 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30728 * 126.27902 * 2 1 4 4 N 1.28650 * 110.34495 * 179.97438 * 3 2 1 5 5 C 1.32185 * 109.56532 * 0.02562 * 4 3 2 6 6 C 1.41047 * 133.25364 * 180.02562 * 5 4 3 7 7 C 1.35650 * 119.39982 * 179.97438 * 6 5 4 8 8 C 1.41815 * 119.59759 * 359.97438 * 7 6 5 9 9 C 1.47604 * 119.97523 * 179.97438 * 8 7 6 10 10 O 1.21590 * 119.99431 * 180.02562 * 9 8 7 11 11 N 1.34777 * 120.00258 * 0.02562 * 9 8 7 12 12 C 1.46495 * 119.99666 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.56534 * 36.98431 * 12 11 9 14 14 C 1.54854 * 110.76087 * 159.98658 * 12 11 9 15 15 C 1.56301 * 103.40566 * 118.42552 * 14 12 11 16 16 H 1.08999 * 115.71779 * 158.93642 * 15 14 12 17 17 C 1.55846 * 105.08242 * 288.42264 * 15 14 12 18 18 C 1.54232 * 103.56136 * 71.68977 * 17 15 14 19 19 C 1.55843 * 103.56514 * 0.02562 * 18 17 15 20 20 H 1.09000 * 116.12696 * 159.05664 * 19 18 17 21 21 N 1.50238 * 100.84001 * 33.12164 * 15 14 12 22 22 C 1.36935 * 130.83752 * 126.10720 * 21 15 14 23 23 H 1.08004 * 120.00038 * 161.06613 * 22 21 15 24 24 C 1.38819 * 120.00110 * 341.07069 * 22 21 15 25 25 N 1.31618 * 119.99678 * 334.35729 * 24 22 21 26 26 Si 1.86795 * 119.99956 * 154.35219 * 24 22 21 27 27 H 1.48504 * 109.47252 * 179.97438 * 26 24 22 28 28 H 1.48506 * 109.47023 * 60.00281 * 26 24 22 29 29 H 1.48500 * 109.47570 * 299.99960 * 26 24 22 30 30 C 1.36492 * 120.04021 * 0.26167 * 8 7 6 31 31 N 1.35846 * 120.38498 * 359.48054 * 30 8 7 32 32 H 1.08995 * 109.46985 * 90.02020 * 1 2 3 33 33 H 1.08993 * 109.47187 * 210.02581 * 1 2 3 34 34 H 1.09004 * 109.46748 * 330.02273 * 1 2 3 35 35 H 1.08001 * 120.30522 * 359.94784 * 6 5 4 36 36 H 1.08001 * 120.19514 * 179.97438 * 7 6 5 37 37 H 0.96997 * 119.99741 * 359.97438 * 11 9 8 38 38 H 1.09001 * 110.62570 * 237.04025 * 14 12 11 39 39 H 1.08993 * 110.62657 * 0.06205 * 14 12 11 40 40 H 1.09000 * 110.62602 * 190.09017 * 17 15 14 41 41 H 1.08996 * 110.62636 * 312.95686 * 17 15 14 42 42 H 1.09000 * 110.64313 * 241.43793 * 18 17 15 43 43 H 1.09002 * 110.49250 * 118.49299 * 18 17 15 44 44 H 0.96997 * 120.00320 * 1.59861 * 25 24 22 45 45 H 1.07999 * 119.81008 * 179.72080 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2805 1.0539 0.0000 4 7 3.5176 0.7007 0.0005 5 6 3.6013 -0.6185 0.0004 6 6 4.6877 -1.5180 0.0012 7 6 4.4470 -2.8530 0.0012 8 6 3.1092 -3.3234 0.0010 9 6 2.8376 -4.7743 0.0005 10 8 1.6907 -5.1781 -0.0002 11 7 3.8609 -5.6514 0.0008 12 6 3.5913 -7.0914 -0.0003 13 1 2.7200 -7.3173 -0.6151 14 6 4.8279 -7.8810 -0.4954 15 6 5.2046 -8.7717 0.7326 16 1 5.8068 -9.6527 0.5109 17 6 5.7945 -7.7842 1.7840 18 6 4.5613 -6.9978 2.2735 19 6 3.3868 -7.6131 1.4545 20 1 2.3882 -7.4734 1.8684 21 7 3.8460 -9.0366 1.3168 22 6 3.2210 -10.2133 1.6325 23 1 2.3839 -10.2140 2.3149 24 6 3.6635 -11.4055 1.0756 25 7 4.2948 -11.3979 -0.0792 26 14 3.3631 -13.0202 1.9654 27 1 3.9282 -14.1378 1.1674 28 1 1.9025 -13.2255 2.1388 29 1 4.0190 -12.9811 3.2971 30 6 2.0726 -2.4355 -0.0047 31 7 2.3131 -1.0985 0.0005 32 1 -0.3633 -0.0004 -1.0276 33 1 -0.3633 -0.8897 0.5142 34 1 -0.3633 0.8902 0.5135 35 1 5.7022 -1.1473 0.0014 36 1 5.2693 -3.5532 0.0015 37 1 4.7758 -5.3293 0.0009 38 1 4.5700 -8.4985 -1.3558 39 1 5.6445 -7.2018 -0.7399 40 1 6.2514 -8.3301 2.6095 41 1 6.5195 -7.1162 1.3190 42 1 4.6697 -5.9361 2.0518 43 1 4.4079 -7.1546 3.3412 44 1 4.4713 -10.5574 -0.5300 45 1 1.0552 -2.7979 -0.0094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095658108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:01 Heat of formation + Delta-G solvation = 124.577545 kcal Electronic energy + Delta-G solvation = -29499.588030 eV Core-core repulsion = 25520.370525 eV Total energy + Delta-G solvation = -3979.217506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.97082 -40.55033 -39.16480 -37.77611 -34.98045 -34.22812 -32.74135 -32.19542 -31.16369 -29.54369 -29.14348 -27.88677 -27.81246 -25.20927 -24.00727 -23.90393 -22.09871 -21.72327 -21.12575 -19.83247 -18.94259 -18.71044 -17.75565 -17.53078 -17.14132 -17.09382 -16.04040 -15.39994 -15.30235 -14.91784 -14.81518 -14.26598 -14.19277 -13.82001 -13.73353 -13.65765 -13.12694 -13.07741 -12.74427 -12.50921 -12.45113 -12.04337 -12.02552 -11.84771 -11.55176 -11.42825 -11.18033 -10.94116 -10.82696 -10.67832 -10.39243 -10.21328 -10.11281 -9.99386 -9.95204 -9.69796 -9.49778 -8.86328 -8.55179 -8.48688 -7.06070 -6.26345 -3.22444 0.01661 0.45965 1.73108 2.07877 2.60384 3.03216 3.21639 3.44692 3.48034 3.57038 3.65722 3.95915 4.06487 4.19173 4.26062 4.32950 4.47679 4.83235 4.84319 4.90271 4.97394 5.20593 5.21663 5.25565 5.33331 5.41285 5.48647 5.52045 5.58383 5.62201 5.66856 5.77433 5.80155 5.83023 5.95094 6.01516 6.23007 6.31316 6.34128 6.38492 6.55295 6.60674 6.70136 6.89886 7.02043 7.45514 7.50469 8.09645 8.11602 8.33620 8.85568 9.68699 10.36572 11.16317 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026968 B = 0.002424 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.017050 B =11548.168985 C =12066.132586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.150 3.850 3 N -0.249 5.249 4 N -0.287 5.287 5 C 0.198 3.802 6 C -0.079 4.079 7 C -0.068 4.068 8 C -0.147 4.147 9 C 0.563 3.437 10 O -0.533 6.533 11 N -0.699 5.699 12 C 0.126 3.874 13 H 0.087 0.913 14 C -0.137 4.137 15 C 0.142 3.858 16 H 0.107 0.893 17 C -0.132 4.132 18 C -0.129 4.129 19 C 0.130 3.870 20 H 0.089 0.911 21 N -0.591 5.591 22 C -0.325 4.325 23 H 0.067 0.933 24 C -0.027 4.027 25 N -0.920 5.920 26 Si 1.073 2.927 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.293 1.293 30 C 0.137 3.863 31 N -0.395 5.395 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.164 0.836 36 H 0.152 0.848 37 H 0.395 0.605 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.270 0.730 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.023 18.758 -0.693 18.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.112 4.112 3 N -0.089 5.089 4 N -0.132 5.132 5 C -0.051 4.051 6 C -0.100 4.100 7 C -0.093 4.093 8 C -0.154 4.154 9 C 0.348 3.652 10 O -0.411 6.411 11 N -0.350 5.350 12 C 0.021 3.979 13 H 0.106 0.894 14 C -0.177 4.177 15 C 0.035 3.965 16 H 0.125 0.875 17 C -0.172 4.172 18 C -0.168 4.168 19 C 0.021 3.979 20 H 0.107 0.893 21 N -0.313 5.313 22 C -0.453 4.453 23 H 0.084 0.916 24 C -0.228 4.228 25 N -0.561 5.561 26 Si 0.903 3.097 27 H -0.210 1.210 28 H -0.220 1.220 29 H -0.221 1.221 30 C 0.012 3.988 31 N -0.075 5.075 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.181 0.819 36 H 0.169 0.831 37 H 0.231 0.769 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -0.410 18.218 -0.729 18.237 hybrid contribution -0.105 0.592 0.071 0.605 sum -0.515 18.810 -0.658 18.828 Atomic orbital electron populations 1.20287 0.82679 1.05106 1.04514 1.25068 0.97145 0.80578 1.08415 1.74200 0.96577 1.23339 1.14744 1.74919 1.10871 1.06018 1.21374 1.22480 0.84950 0.92778 1.04882 1.20181 0.97390 0.90586 1.01831 1.21246 0.95866 0.95565 0.96582 1.19651 0.93084 0.94682 1.07982 1.17581 0.85703 0.84360 0.77551 1.90834 1.20718 1.79494 1.50051 1.46139 1.08389 1.07364 1.73105 1.22774 0.98907 0.75922 1.00304 0.89449 1.23313 0.95648 0.98428 1.00305 1.23069 0.88464 0.94566 0.90438 0.87537 1.22834 0.96325 0.98184 0.99843 1.22799 0.96705 0.97538 0.99768 1.23249 0.95986 0.86247 0.92423 0.89290 1.46521 1.11057 0.99795 1.73882 1.19721 1.16930 0.83809 1.24821 0.91560 1.25852 1.00299 1.00981 0.95703 1.70819 1.44317 1.29788 1.11184 0.83362 0.75837 0.75395 0.75087 1.21027 1.21953 1.22080 1.21732 1.02202 0.79221 0.95670 1.43696 1.09150 1.06825 1.47818 0.89193 0.89927 0.88135 0.81859 0.83078 0.76911 0.90910 0.92205 0.92403 0.93026 0.92842 0.92659 0.91861 0.79729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.40 36.00 0.37 -0.02 16 2 C 0.15 1.57 8.14 -154.11 -1.25 0.31 16 3 N -0.25 -3.30 12.18 32.97 0.40 -2.90 16 4 N -0.29 -3.95 12.29 31.19 0.38 -3.57 16 5 C 0.20 2.28 7.92 -155.95 -1.23 1.04 16 6 C -0.08 -0.65 10.09 -39.44 -0.40 -1.05 16 7 C -0.07 -0.52 9.53 -39.14 -0.37 -0.89 16 8 C -0.15 -1.46 5.84 -105.34 -0.61 -2.07 16 9 C 0.56 7.28 7.76 -12.44 -0.10 7.18 16 10 O -0.53 -8.88 16.00 5.29 0.08 -8.80 16 11 N -0.70 -8.65 3.59 -52.38 -0.19 -8.84 16 12 C 0.13 2.13 3.07 -65.40 -0.20 1.93 16 13 H 0.09 1.71 7.70 -51.93 -0.40 1.31 16 14 C -0.14 -2.32 6.07 -23.98 -0.15 -2.46 16 15 C 0.14 2.86 3.85 -62.55 -0.24 2.62 16 16 H 0.11 2.44 6.78 -51.93 -0.35 2.09 16 17 C -0.13 -2.18 6.41 -24.57 -0.16 -2.34 16 18 C -0.13 -2.08 6.29 -24.57 -0.15 -2.24 16 19 C 0.13 2.52 5.35 -62.79 -0.34 2.18 16 20 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 21 N -0.59 -13.89 2.81 -145.53 -0.41 -14.30 16 22 C -0.33 -8.82 10.39 -15.06 -0.16 -8.98 16 23 H 0.07 1.82 7.95 -52.48 -0.42 1.40 16 24 C -0.03 -0.74 5.29 -17.43 -0.09 -0.83 16 25 N -0.92 -26.44 12.90 55.49 0.72 -25.72 16 26 Si 1.07 24.69 29.99 -169.99 -5.10 19.59 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 29 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 30 C 0.14 1.33 10.45 -16.40 -0.17 1.16 16 31 N -0.39 -4.18 2.94 -59.37 -0.17 -4.35 16 32 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.15 0.73 6.44 -52.49 -0.34 0.39 16 37 H 0.40 3.66 6.06 -40.82 -0.25 3.41 16 38 H 0.07 1.37 7.65 -51.93 -0.40 0.97 16 39 H 0.06 0.79 7.36 -51.93 -0.38 0.41 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.68 7.83 -51.93 -0.41 0.28 16 42 H 0.05 0.71 6.49 -51.93 -0.34 0.37 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.27 7.53 5.57 -40.82 -0.23 7.31 16 45 H 0.19 1.55 7.56 -52.49 -0.40 1.16 16 LS Contribution 365.17 15.07 5.50 5.50 Total: -1.00 -34.46 365.17 -9.69 -44.15 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -5.66 Total: 3.69 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -5.25 Total: -4.45 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.73 Total: -59.68 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.80 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.10 Total: 19.59 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.46 -9.69 -44.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095658108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.726 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds