Wall clock time and date at job start Sat Apr 11 2020 06:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30728 * 126.27902 * 2 1 4 4 N 1.28650 * 110.34495 * 179.97438 * 3 2 1 5 5 C 1.32185 * 109.56532 * 0.02562 * 4 3 2 6 6 C 1.41047 * 133.25364 * 180.02562 * 5 4 3 7 7 C 1.35650 * 119.39982 * 179.97438 * 6 5 4 8 8 C 1.41815 * 119.59759 * 359.97438 * 7 6 5 9 9 C 1.47604 * 119.97523 * 179.97438 * 8 7 6 10 10 O 1.21590 * 119.99431 * 180.02562 * 9 8 7 11 11 N 1.34777 * 120.00258 * 0.02562 * 9 8 7 12 12 C 1.46495 * 119.99666 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.56534 * 36.98431 * 12 11 9 14 14 C 1.54854 * 110.76087 * 159.98658 * 12 11 9 15 15 C 1.56301 * 103.40566 * 118.42552 * 14 12 11 16 16 H 1.08999 * 115.71779 * 158.93642 * 15 14 12 17 17 C 1.55846 * 105.08242 * 288.42264 * 15 14 12 18 18 C 1.54232 * 103.56136 * 71.68977 * 17 15 14 19 19 C 1.55843 * 103.56514 * 0.02562 * 18 17 15 20 20 H 1.09000 * 116.12696 * 159.05664 * 19 18 17 21 21 N 1.50238 * 100.84001 * 33.12164 * 15 14 12 22 22 C 1.36935 * 130.83752 * 126.10720 * 21 15 14 23 23 H 1.08004 * 120.00038 * 161.06613 * 22 21 15 24 24 C 1.38819 * 120.00110 * 341.07069 * 22 21 15 25 25 N 1.31618 * 119.99678 * 334.35729 * 24 22 21 26 26 Si 1.86795 * 119.99956 * 154.35219 * 24 22 21 27 27 H 1.48504 * 109.47252 * 179.97438 * 26 24 22 28 28 H 1.48506 * 109.47023 * 60.00281 * 26 24 22 29 29 H 1.48500 * 109.47570 * 299.99960 * 26 24 22 30 30 C 1.36492 * 120.04021 * 0.26167 * 8 7 6 31 31 N 1.35846 * 120.38498 * 359.48054 * 30 8 7 32 32 H 1.08995 * 109.46985 * 90.02020 * 1 2 3 33 33 H 1.08993 * 109.47187 * 210.02581 * 1 2 3 34 34 H 1.09004 * 109.46748 * 330.02273 * 1 2 3 35 35 H 1.08001 * 120.30522 * 359.94784 * 6 5 4 36 36 H 1.08001 * 120.19514 * 179.97438 * 7 6 5 37 37 H 0.96997 * 119.99741 * 359.97438 * 11 9 8 38 38 H 1.09001 * 110.62570 * 237.04025 * 14 12 11 39 39 H 1.08993 * 110.62657 * 0.06205 * 14 12 11 40 40 H 1.09000 * 110.62602 * 190.09017 * 17 15 14 41 41 H 1.08996 * 110.62636 * 312.95686 * 17 15 14 42 42 H 1.09000 * 110.64313 * 241.43793 * 18 17 15 43 43 H 1.09002 * 110.49250 * 118.49299 * 18 17 15 44 44 H 0.96997 * 120.00320 * 1.59861 * 25 24 22 45 45 H 1.07999 * 119.81008 * 179.72080 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2805 1.0539 0.0000 4 7 3.5176 0.7007 0.0005 5 6 3.6013 -0.6185 0.0004 6 6 4.6877 -1.5180 0.0012 7 6 4.4470 -2.8530 0.0012 8 6 3.1092 -3.3234 0.0010 9 6 2.8376 -4.7743 0.0005 10 8 1.6907 -5.1781 -0.0002 11 7 3.8609 -5.6514 0.0008 12 6 3.5913 -7.0914 -0.0003 13 1 2.7200 -7.3173 -0.6151 14 6 4.8279 -7.8810 -0.4954 15 6 5.2046 -8.7717 0.7326 16 1 5.8068 -9.6527 0.5109 17 6 5.7945 -7.7842 1.7840 18 6 4.5613 -6.9978 2.2735 19 6 3.3868 -7.6131 1.4545 20 1 2.3882 -7.4734 1.8684 21 7 3.8460 -9.0366 1.3168 22 6 3.2210 -10.2133 1.6325 23 1 2.3839 -10.2140 2.3149 24 6 3.6635 -11.4055 1.0756 25 7 4.2948 -11.3979 -0.0792 26 14 3.3631 -13.0202 1.9654 27 1 3.9282 -14.1378 1.1674 28 1 1.9025 -13.2255 2.1388 29 1 4.0190 -12.9811 3.2971 30 6 2.0726 -2.4355 -0.0047 31 7 2.3131 -1.0985 0.0005 32 1 -0.3633 -0.0004 -1.0276 33 1 -0.3633 -0.8897 0.5142 34 1 -0.3633 0.8902 0.5135 35 1 5.7022 -1.1473 0.0014 36 1 5.2693 -3.5532 0.0015 37 1 4.7758 -5.3293 0.0009 38 1 4.5700 -8.4985 -1.3558 39 1 5.6445 -7.2018 -0.7399 40 1 6.2514 -8.3301 2.6095 41 1 6.5195 -7.1162 1.3190 42 1 4.6697 -5.9361 2.0518 43 1 4.4079 -7.1546 3.3412 44 1 4.4713 -10.5574 -0.5300 45 1 1.0552 -2.7979 -0.0094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095658108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:00 Heat of formation + Delta-G solvation = 104.045826 kcal Electronic energy + Delta-G solvation = -29500.478353 eV Core-core repulsion = 25520.370525 eV Total energy + Delta-G solvation = -3980.107828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.76102 -41.78194 -40.37752 -38.72631 -35.92933 -35.41450 -34.43522 -33.04237 -31.86897 -30.88904 -30.85822 -29.31998 -28.52112 -26.36093 -25.56319 -24.72248 -23.07559 -22.78673 -22.27333 -21.43920 -20.31502 -19.73364 -19.38541 -18.32766 -18.12504 -17.89650 -17.17663 -16.75197 -16.40659 -16.03405 -15.78630 -15.65771 -15.49611 -15.14351 -14.80514 -14.53117 -14.17615 -13.98112 -13.64856 -13.57187 -13.47557 -13.39166 -13.19969 -12.91468 -12.79313 -12.61431 -12.50855 -12.37962 -12.20872 -11.93875 -11.83542 -11.74694 -11.62992 -11.43267 -11.24167 -11.00370 -10.78922 -10.54848 -10.11288 -9.24375 -8.92890 -8.38631 -5.28099 -0.73719 -0.24337 0.95759 1.24697 1.57024 1.64184 1.73750 1.83075 1.98656 2.36134 2.62120 2.87128 3.20280 3.26647 3.31898 3.39157 3.47862 3.59030 3.62978 3.77716 3.93739 4.02213 4.14020 4.30064 4.31432 4.35171 4.46807 4.56602 4.58745 4.65418 4.67519 4.72474 4.82055 4.85938 4.88808 4.93962 4.97935 5.01806 5.07269 5.18349 5.25016 5.34693 5.47995 5.59118 5.61871 5.66503 6.31908 6.44051 6.85781 7.10007 7.29285 7.67138 8.44577 9.07493 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026968 B = 0.002424 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.017050 B =11548.168985 C =12066.132586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.154 3.846 3 N -0.287 5.287 4 N -0.328 5.328 5 C 0.189 3.811 6 C -0.080 4.080 7 C -0.051 4.051 8 C -0.148 4.148 9 C 0.569 3.431 10 O -0.574 6.574 11 N -0.683 5.683 12 C 0.148 3.852 13 H 0.052 0.948 14 C -0.123 4.123 15 C 0.129 3.871 16 H 0.072 0.928 17 C -0.120 4.120 18 C -0.114 4.114 19 C 0.117 3.883 20 H 0.063 0.937 21 N -0.624 5.624 22 C -0.333 4.333 23 H 0.049 0.951 24 C -0.077 4.077 25 N -0.950 5.950 26 Si 1.118 2.882 27 H -0.290 1.290 28 H -0.281 1.281 29 H -0.281 1.281 30 C 0.140 3.860 31 N -0.400 5.400 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.192 0.808 36 H 0.190 0.810 37 H 0.417 0.583 38 H 0.046 0.954 39 H 0.111 0.889 40 H 0.044 0.956 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.045 0.955 44 H 0.264 0.736 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.537 20.411 -0.404 20.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.109 4.109 3 N -0.125 5.125 4 N -0.171 5.171 5 C -0.061 4.061 6 C -0.101 4.101 7 C -0.076 4.076 8 C -0.155 4.155 9 C 0.356 3.644 10 O -0.455 6.455 11 N -0.336 5.336 12 C 0.041 3.959 13 H 0.070 0.930 14 C -0.162 4.162 15 C 0.023 3.977 16 H 0.090 0.910 17 C -0.159 4.159 18 C -0.153 4.153 19 C 0.010 3.990 20 H 0.082 0.918 21 N -0.348 5.348 22 C -0.461 4.461 23 H 0.067 0.933 24 C -0.273 4.273 25 N -0.593 5.593 26 Si 0.943 3.057 27 H -0.216 1.216 28 H -0.207 1.207 29 H -0.208 1.208 30 C 0.014 3.986 31 N -0.080 5.080 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.128 0.872 35 H 0.209 0.791 36 H 0.207 0.793 37 H 0.257 0.743 38 H 0.065 0.935 39 H 0.129 0.871 40 H 0.063 0.937 41 H 0.120 0.880 42 H 0.113 0.887 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 1.187 19.965 -0.432 20.005 hybrid contribution -0.695 0.148 -0.020 0.711 sum 0.492 20.113 -0.452 20.124 Atomic orbital electron populations 1.20528 0.79883 1.06363 1.05857 1.25832 0.98579 0.80011 1.06498 1.74115 0.96986 1.24823 1.16582 1.74809 1.11398 1.07517 1.23406 1.23045 0.86134 0.92666 1.04237 1.20556 0.97755 0.90271 1.01531 1.21547 0.95451 0.95858 0.94728 1.19388 0.94515 0.92467 1.09142 1.17901 0.84912 0.85451 0.76156 1.90834 1.22582 1.80401 1.51654 1.45750 1.09638 1.05199 1.73009 1.22112 0.97738 0.78458 0.97615 0.92958 1.23169 0.96983 0.98289 0.97800 1.23163 0.86930 0.94829 0.92790 0.91036 1.22782 0.97002 0.97727 0.98343 1.22710 0.94609 0.99466 0.98503 1.23376 0.96208 0.84841 0.94617 0.91848 1.46751 1.13038 1.00290 1.74714 1.19872 1.16517 0.85891 1.23848 0.93272 1.27029 1.00501 1.03890 0.95907 1.70891 1.46443 1.29573 1.12380 0.82769 0.76379 0.72086 0.74435 1.21577 1.20722 1.20785 1.21891 1.02860 0.78937 0.94918 1.43798 1.09119 1.07023 1.48064 0.87680 0.88331 0.87170 0.79083 0.79301 0.74282 0.93549 0.87066 0.93666 0.87975 0.88737 0.93636 0.92549 0.78937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.40 71.24 0.74 0.06 16 2 C 0.15 3.04 8.14 137.67 1.12 4.16 16 3 N -0.29 -7.52 12.18 -49.61 -0.60 -8.13 16 4 N -0.33 -8.81 12.29 -55.23 -0.68 -9.49 16 5 C 0.19 3.98 7.92 134.12 1.06 5.04 16 6 C -0.08 -1.02 10.09 22.36 0.23 -0.79 16 7 C -0.05 -0.53 9.53 22.56 0.21 -0.31 16 8 C -0.15 -2.43 5.84 -20.33 -0.12 -2.55 16 9 C 0.57 13.14 7.76 86.72 0.67 13.81 16 10 O -0.57 -18.62 16.00 -4.00 -0.06 -18.69 16 11 N -0.68 -14.33 3.59 -437.90 -1.57 -15.90 16 12 C 0.15 4.78 3.07 46.63 0.14 4.92 16 13 H 0.05 2.08 7.70 -2.39 -0.02 2.07 16 14 C -0.12 -3.91 6.07 32.38 0.20 -3.72 16 15 C 0.13 5.12 3.85 46.39 0.18 5.29 16 16 H 0.07 3.34 6.78 -2.39 -0.02 3.33 16 17 C -0.12 -3.53 6.41 32.00 0.21 -3.33 16 18 C -0.11 -3.33 6.29 31.99 0.20 -3.13 16 19 C 0.12 4.51 5.35 46.26 0.25 4.76 16 20 H 0.06 2.71 8.14 -2.39 -0.02 2.70 16 21 N -0.62 -29.92 2.81 -614.35 -1.72 -31.64 16 22 C -0.33 -18.69 10.39 84.04 0.87 -17.81 16 23 H 0.05 2.83 7.95 -2.91 -0.02 2.81 16 24 C -0.08 -4.35 5.29 84.86 0.45 -3.91 16 25 N -0.95 -56.35 12.90 21.65 0.28 -56.07 16 26 Si 1.12 51.01 29.99 68.60 2.06 53.07 16 27 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 28 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 29 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 30 C 0.14 2.39 10.45 83.66 0.87 3.26 16 31 N -0.40 -7.75 2.94 -341.74 -1.00 -8.75 16 32 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.19 1.28 8.06 -2.91 -0.02 1.26 16 36 H 0.19 0.44 6.44 -2.91 -0.02 0.42 16 37 H 0.42 5.09 6.06 -92.71 -0.56 4.53 16 38 H 0.05 1.73 7.65 -2.39 -0.02 1.72 16 39 H 0.11 2.37 7.36 -2.39 -0.02 2.35 16 40 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.10 2.03 7.83 -2.39 -0.02 2.01 16 42 H 0.09 1.99 6.49 -2.39 -0.02 1.97 16 43 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.26 15.32 5.57 -92.71 -0.52 14.80 16 45 H 0.19 2.90 7.56 -2.91 -0.02 2.88 16 Total: -1.00 -82.05 365.17 4.71 -77.34 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.73 Total: 12.50 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 7.29 Total: 5.76 kcal Atomic # 7 Polarization: -124.68 SS G_CDS: -5.31 Total: -129.98 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.06 Total: -18.69 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.06 Total: 53.07 kcal Total: -82.05 4.71 -77.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095658108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.389 kcal (2) G-P(sol) polarization free energy of solvation -82.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds