Wall clock time and date at job start Sat Apr 11 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30719 * 126.27183 * 2 1 4 4 N 1.28653 * 110.34497 * 180.02562 * 3 2 1 5 5 C 1.32189 * 109.56066 * 0.02562 * 4 3 2 6 6 C 1.41054 * 133.25307 * 180.02562 * 5 4 3 7 7 C 1.35639 * 119.39994 * 179.72700 * 6 5 4 8 8 C 1.41814 * 119.59912 * 0.51338 * 7 6 5 9 9 C 1.47603 * 119.98096 * 179.73723 * 8 7 6 10 10 O 1.21589 * 119.99717 * 179.72508 * 9 8 7 11 11 N 1.34774 * 120.00151 * 359.72602 * 9 8 7 12 12 C 1.46499 * 120.00333 * 179.97438 * 11 9 8 13 13 H 1.09008 * 110.68243 * 32.01330 * 12 11 9 14 14 C 1.55478 * 110.75775 * 268.96043 * 12 11 9 15 15 C 1.55845 * 103.32174 * 241.51067 * 14 12 11 16 16 H 1.09005 * 116.12422 * 159.23661 * 15 14 12 17 17 C 1.56855 * 105.77912 * 288.56510 * 15 14 12 18 18 C 1.54844 * 103.35668 * 71.46140 * 17 15 14 19 19 C 1.55840 * 110.62582 * 154.99586 * 12 11 9 20 20 H 1.08998 * 115.56895 * 319.68410 * 19 12 11 21 21 N 1.50234 * 101.05342 * 33.02501 * 15 14 12 22 22 C 1.36945 * 130.84057 * 126.06247 * 21 15 14 23 23 H 1.07999 * 120.00077 * 179.66596 * 22 21 15 24 24 C 1.38812 * 119.99637 * 359.66430 * 22 21 15 25 25 N 1.31617 * 120.00227 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99854 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47057 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47102 * 119.99824 * 26 24 22 29 29 H 1.48500 * 109.47389 * 240.00173 * 26 24 22 30 30 C 1.36499 * 120.04013 * 359.46332 * 8 7 6 31 31 N 1.35844 * 120.38198 * 0.26961 * 30 8 7 32 32 H 1.08998 * 109.47085 * 269.97004 * 1 2 3 33 33 H 1.08996 * 109.47657 * 29.97342 * 1 2 3 34 34 H 1.09003 * 109.47100 * 149.97358 * 1 2 3 35 35 H 1.07996 * 120.30109 * 359.97438 * 6 5 4 36 36 H 1.07999 * 120.19877 * 180.27272 * 7 6 5 37 37 H 0.96999 * 119.99702 * 0.02562 * 11 9 8 38 38 H 1.09002 * 110.61164 * 123.09871 * 14 12 11 39 39 H 1.08997 * 110.75754 * 359.97438 * 14 12 11 40 40 H 1.09001 * 110.43268 * 313.10489 * 17 15 14 41 41 H 1.09001 * 111.03898 * 190.09807 * 17 15 14 42 42 H 1.09004 * 110.62498 * 241.78509 * 18 17 15 43 43 H 1.08994 * 110.76793 * 118.82867 * 18 17 15 44 44 H 0.97005 * 120.00046 * 179.97438 * 25 24 22 45 45 H 1.08001 * 119.81217 * 180.29778 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2803 1.0539 0.0000 4 7 3.5175 0.7008 -0.0005 5 6 3.6013 -0.6184 -0.0015 6 6 4.6878 -1.5179 -0.0019 7 6 4.4471 -2.8527 0.0027 8 6 3.1094 -3.3233 -0.0032 9 6 2.8379 -4.7742 -0.0041 10 8 1.6910 -5.1780 -0.0041 11 7 3.8612 -5.6513 -0.0049 12 6 3.5917 -7.0913 -0.0052 13 1 2.6706 -7.3105 -0.5454 14 6 3.5171 -7.6383 1.4482 15 6 4.6806 -8.6736 1.5025 16 1 5.0491 -8.9299 2.4959 17 6 4.2125 -9.8876 0.6265 18 6 4.2845 -9.3351 -0.8182 19 6 4.7897 -7.8738 -0.6226 20 1 5.2510 -7.4147 -1.4970 21 7 5.6780 -8.0347 0.5783 22 6 6.9935 -7.7057 0.7696 23 1 7.5578 -7.2494 -0.0302 24 6 7.6015 -7.9587 1.9916 25 7 6.9139 -8.5153 2.9661 26 14 9.3961 -7.5107 2.2524 27 1 9.9399 -6.9028 1.0114 28 1 9.5062 -6.5377 3.3689 29 1 10.1688 -8.7346 2.5843 30 6 2.0726 -2.4354 -0.0023 31 7 2.3131 -1.0985 -0.0014 32 1 -0.3633 -0.0005 1.0276 33 1 -0.3634 0.8902 -0.5134 34 1 -0.3633 -0.8898 -0.5143 35 1 5.7021 -1.1471 -0.0018 36 1 5.2694 -3.5529 0.0069 37 1 4.7761 -5.3291 -0.0045 38 1 2.5592 -8.1275 1.6254 39 1 3.6809 -6.8388 2.1708 40 1 3.1902 -10.1680 0.8800 41 1 4.8835 -10.7383 0.7461 42 1 3.2977 -9.3414 -1.2813 43 1 4.9918 -9.9090 -1.4167 44 1 7.3389 -8.6924 3.8199 45 1 1.0553 -2.7979 -0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097393903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:11 Heat of formation + Delta-G solvation = 120.422536 kcal Electronic energy + Delta-G solvation = -29532.152280 eV Core-core repulsion = 25552.754600 eV Total energy + Delta-G solvation = -3979.397680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.83803 -40.22469 -38.91451 -37.64766 -34.82399 -33.98463 -32.67038 -32.11497 -31.02733 -29.19732 -28.98227 -27.90952 -27.71775 -25.05721 -24.22859 -23.81137 -22.02544 -21.65611 -20.39995 -19.92136 -18.88554 -18.44198 -17.40592 -17.19589 -17.03988 -16.96181 -15.97783 -15.19867 -15.03176 -14.90832 -14.68924 -14.29837 -13.98148 -13.67179 -13.63929 -13.56670 -13.07273 -12.96557 -12.65521 -12.29454 -12.16630 -11.93781 -11.88067 -11.46127 -11.34674 -11.21972 -11.01797 -10.99678 -10.81737 -10.65012 -10.45379 -10.17681 -10.12108 -9.99057 -9.81603 -9.40442 -9.29265 -9.07689 -8.69487 -8.34744 -7.05663 -5.84581 -3.24336 0.16035 0.62005 1.86495 2.20789 2.74505 3.22705 3.29479 3.34847 3.37090 3.38196 3.72579 4.07521 4.22046 4.31558 4.34921 4.40481 4.53124 4.94639 4.98026 5.04961 5.06614 5.25289 5.32676 5.47001 5.51338 5.56086 5.58494 5.70290 5.71834 5.77984 5.93487 5.96198 5.97639 6.02746 6.16452 6.30214 6.36191 6.47371 6.48910 6.61145 6.70787 6.83724 6.94525 7.19445 7.37033 7.67330 7.70770 8.06735 8.24237 8.25949 8.96903 9.60514 10.40546 11.24217 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013563 B = 0.003115 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.947052 B = 8987.658045 C =10509.225720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.146 3.854 3 N -0.250 5.250 4 N -0.289 5.289 5 C 0.201 3.799 6 C -0.080 4.080 7 C -0.065 4.065 8 C -0.144 4.144 9 C 0.564 3.436 10 O -0.546 6.546 11 N -0.690 5.690 12 C 0.127 3.873 13 H 0.084 0.916 14 C -0.141 4.141 15 C 0.153 3.847 16 H 0.153 0.847 17 C -0.140 4.140 18 C -0.127 4.127 19 C 0.125 3.875 20 H 0.088 0.912 21 N -0.592 5.592 22 C -0.218 4.218 23 H 0.079 0.921 24 C -0.008 4.008 25 N -0.918 5.918 26 Si 0.914 3.086 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 C 0.133 3.867 31 N -0.394 5.394 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.164 0.836 36 H 0.156 0.844 37 H 0.404 0.596 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.254 0.746 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.376 8.503 -6.545 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.116 4.116 3 N -0.089 5.089 4 N -0.134 5.134 5 C -0.048 4.048 6 C -0.102 4.102 7 C -0.089 4.089 8 C -0.151 4.151 9 C 0.349 3.651 10 O -0.426 6.426 11 N -0.339 5.339 12 C 0.021 3.979 13 H 0.102 0.898 14 C -0.181 4.181 15 C 0.047 3.953 16 H 0.170 0.830 17 C -0.179 4.179 18 C -0.167 4.167 19 C 0.016 3.984 20 H 0.106 0.894 21 N -0.312 5.312 22 C -0.346 4.346 23 H 0.097 0.903 24 C -0.204 4.204 25 N -0.565 5.565 26 Si 0.745 3.255 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 C 0.007 3.993 31 N -0.074 5.074 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.182 0.818 36 H 0.174 0.826 37 H 0.241 0.759 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -10.519 9.878 -6.368 15.773 hybrid contribution 1.079 -1.006 0.182 1.486 sum -9.441 8.871 -6.186 14.356 Atomic orbital electron populations 1.20258 0.82805 1.04924 1.04429 1.25011 0.97072 0.80656 1.08896 1.74177 0.96632 1.23398 1.14722 1.74919 1.10776 1.06052 1.21642 1.22495 0.84937 0.92731 1.04615 1.20205 0.97418 0.90603 1.01943 1.21355 0.96091 0.95714 0.95777 1.19679 0.93103 0.94748 1.07534 1.17588 0.85639 0.84455 0.77417 1.90777 1.20829 1.79629 1.51344 1.45895 1.08967 1.07143 1.71919 1.22837 0.99162 0.77541 0.98315 0.89803 1.23529 0.99334 1.00413 0.94842 1.23962 0.85392 0.88176 0.97793 0.82977 1.23234 0.98926 1.00064 0.95683 1.22863 0.99094 0.97177 0.97573 1.23164 0.89814 0.93857 0.91566 0.89422 1.46574 1.06992 1.69465 1.08212 1.19039 0.84287 1.33762 0.97481 0.90298 1.24706 0.98273 1.01364 0.96068 1.69462 1.34917 1.48105 1.04016 0.86018 0.84223 0.77658 0.77650 1.20539 1.21766 1.21774 1.21689 1.02056 0.79218 0.96288 1.43677 1.09140 1.06816 1.47810 0.89282 0.88249 0.90052 0.81807 0.82645 0.75925 0.92603 0.92062 0.93387 0.92539 0.92994 0.92343 0.93500 0.79838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.40 36.00 0.37 -0.06 16 2 C 0.15 1.68 8.14 -154.12 -1.25 0.42 16 3 N -0.25 -3.61 12.18 32.96 0.40 -3.20 16 4 N -0.29 -4.42 12.30 31.19 0.38 -4.03 16 5 C 0.20 2.67 7.92 -155.94 -1.23 1.43 16 6 C -0.08 -0.86 10.09 -39.44 -0.40 -1.26 16 7 C -0.06 -0.68 9.53 -39.14 -0.37 -1.05 16 8 C -0.14 -1.70 5.84 -105.34 -0.61 -2.32 16 9 C 0.56 8.10 7.76 -12.44 -0.10 8.01 16 10 O -0.55 -9.19 15.92 5.29 0.08 -9.10 16 11 N -0.69 -10.23 5.05 -52.09 -0.26 -10.50 16 12 C 0.13 2.11 2.84 -65.10 -0.18 1.93 16 13 H 0.08 1.38 7.26 -51.92 -0.38 1.01 16 14 C -0.14 -2.62 6.28 -23.90 -0.15 -2.77 16 15 C 0.15 3.24 4.72 -62.24 -0.29 2.94 16 16 H 0.15 3.76 5.52 -51.93 -0.29 3.47 16 17 C -0.14 -2.57 6.50 -23.67 -0.15 -2.72 16 18 C -0.13 -2.12 6.46 -24.24 -0.16 -2.27 16 19 C 0.12 2.19 5.01 -62.80 -0.31 1.88 16 20 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 21 N -0.59 -12.88 2.97 -145.21 -0.43 -13.31 16 22 C -0.22 -5.30 10.59 -15.06 -0.16 -5.46 16 23 H 0.08 1.85 7.83 -52.49 -0.41 1.44 16 24 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 25 N -0.92 -24.48 10.47 55.49 0.58 -23.90 16 26 Si 0.91 20.39 29.55 -169.99 -5.02 15.37 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 29 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 30 C 0.13 1.46 10.45 -16.40 -0.17 1.29 16 31 N -0.39 -4.72 2.94 -59.37 -0.17 -4.89 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.16 1.41 6.44 -52.49 -0.34 1.07 16 37 H 0.40 5.67 6.69 -40.82 -0.27 5.40 16 38 H 0.06 0.97 7.88 -51.93 -0.41 0.56 16 39 H 0.06 1.24 8.00 -51.93 -0.42 0.82 16 40 H 0.05 0.79 7.88 -51.93 -0.41 0.38 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.75 7.85 -51.93 -0.41 0.35 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 45 H 0.18 1.70 7.56 -52.49 -0.40 1.30 16 LS Contribution 368.83 15.07 5.56 5.56 Total: -1.00 -30.99 368.83 -9.98 -40.97 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -5.82 Total: 7.36 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -5.28 Total: -0.31 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.50 Total: -59.84 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.10 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.99 -9.98 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097393903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.391 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds