Wall clock time and date at job start Sat Apr 11 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30286 * 124.97071 * 2 1 4 4 C 1.34654 * 109.66831 * 180.02562 * 3 2 1 5 5 C 1.40825 * 107.26427 * 359.97438 * 4 3 2 6 6 N 1.32108 * 120.46607 * 180.02562 * 5 4 3 7 7 C 1.31731 * 121.94905 * 0.02562 * 6 5 4 8 8 C 1.38337 * 121.54212 * 359.73114 * 7 6 5 9 9 C 1.39634 * 119.37836 * 0.51871 * 8 7 6 10 10 C 1.47764 * 121.07413 * 179.77266 * 9 8 7 11 11 O 1.21564 * 120.00224 * 179.72159 * 10 9 8 12 12 N 1.34775 * 119.99965 * 359.71920 * 10 9 8 13 13 C 1.46504 * 119.99764 * 179.97438 * 12 10 9 14 14 H 1.08993 * 110.55822 * 36.45036 * 13 12 10 15 15 C 1.54854 * 110.62512 * 273.54674 * 13 12 10 16 16 C 1.55848 * 103.58870 * 241.43200 * 15 13 12 17 17 H 1.08995 * 115.56029 * 159.64169 * 16 15 13 18 18 C 1.55765 * 105.10126 * 288.40455 * 16 15 13 19 19 C 1.54854 * 103.59622 * 71.60092 * 18 16 15 20 20 C 1.55839 * 103.44395 * 0.05991 * 19 18 16 21 21 H 1.09004 * 115.56261 * 159.56688 * 20 19 18 22 22 N 1.50236 * 101.05512 * 32.93720 * 20 19 18 23 23 C 1.36935 * 130.84462 * 126.01035 * 22 20 19 24 24 H 1.08007 * 119.99416 * 0.02562 * 23 22 20 25 25 C 1.38807 * 120.00594 * 180.02562 * 23 22 20 26 26 N 1.31620 * 119.99850 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00264 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.46960 * 60.00143 * 27 25 23 29 29 H 1.48494 * 109.46956 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.47042 * 300.00157 * 27 25 23 31 31 N 1.35987 * 124.97537 * 180.02562 * 2 1 3 32 32 H 0.97002 * 126.35590 * 359.95821 * 31 2 1 33 33 H 1.09000 * 109.47018 * 89.97926 * 1 2 3 34 34 H 1.09000 * 109.46556 * 209.97106 * 1 2 3 35 35 H 1.08992 * 109.47135 * 329.97269 * 1 2 3 36 36 H 1.07993 * 119.22710 * 179.97438 * 7 6 5 37 37 H 1.08001 * 120.31024 * 180.27588 * 8 7 6 38 38 H 0.96999 * 119.99997 * 0.02562 * 12 10 9 39 39 H 1.09002 * 110.62797 * 0.02562 * 15 13 12 40 40 H 1.08994 * 110.62395 * 122.86206 * 15 13 12 41 41 H 1.09002 * 110.50483 * 313.09025 * 18 16 15 42 42 H 1.09000 * 110.74516 * 190.22908 * 18 16 15 43 43 H 1.09001 * 110.62863 * 241.57172 * 19 18 16 44 44 H 1.08996 * 110.62463 * 118.54794 * 19 18 16 45 45 H 0.96996 * 120.00141 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2537 1.0676 0.0000 4 6 3.5525 0.7123 -0.0006 5 6 3.6008 -0.6952 -0.0003 6 7 4.7617 -1.3256 -0.0003 7 6 5.9077 -0.6760 0.0001 8 6 5.9559 0.7065 -0.0051 9 6 4.7637 1.4335 0.0001 10 6 4.7715 2.9111 -0.0001 11 8 3.7219 3.5245 -0.0006 12 7 5.9422 3.5788 0.0002 13 6 5.9498 5.0439 -0.0006 14 1 5.1306 5.4312 0.6050 15 6 5.8639 5.5890 -1.4475 16 6 7.1907 6.3889 -1.6167 17 1 7.5041 6.5678 -2.6452 18 6 7.0131 7.6607 -0.7351 19 6 7.0989 7.1156 0.7118 20 6 7.3188 5.5860 0.5102 21 1 7.7464 5.0561 1.3614 22 7 8.1241 5.5754 -0.7581 23 6 9.3345 5.0033 -1.0456 24 1 9.8637 4.4483 -0.2850 25 6 9.8814 5.1367 -2.3144 26 7 9.2368 5.8135 -3.2411 27 14 11.5323 4.3556 -2.7067 28 1 11.4451 2.8869 -2.5063 29 1 11.8926 4.6425 -4.1185 30 1 12.5719 4.9172 -1.8071 31 7 2.2865 -1.1143 -0.0005 32 1 1.9760 -2.0333 -0.0003 33 1 -0.3633 0.0004 -1.0277 34 1 -0.3632 -0.8903 0.5134 35 1 -0.3633 0.8897 0.5142 36 1 6.8312 -1.2359 0.0005 37 1 6.9067 1.2188 -0.0092 38 1 6.7797 3.0894 0.0003 39 1 5.8152 4.7694 -2.1644 40 1 5.0021 6.2467 -1.5594 41 1 6.0402 8.1179 -0.9160 42 1 7.8133 8.3763 -0.9239 43 1 6.1687 7.3024 1.2484 44 1 7.9435 7.5587 1.2394 45 1 9.6191 5.9070 -4.1276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097569152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:15 Heat of formation + Delta-G solvation = 102.204705 kcal Electronic energy + Delta-G solvation = -29698.648580 eV Core-core repulsion = 25718.460915 eV Total energy + Delta-G solvation = -3980.187665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.56863 -39.80382 -38.71757 -37.89515 -33.84443 -33.70918 -32.54015 -31.71375 -31.44570 -29.09998 -28.80144 -28.29883 -27.63157 -24.41666 -23.99596 -23.12634 -21.59851 -21.17214 -20.14442 -19.82134 -18.78749 -18.19395 -17.61446 -17.08658 -16.99080 -16.08660 -15.72768 -15.15795 -14.84006 -14.69017 -14.37967 -14.02088 -13.89118 -13.69364 -13.64853 -13.52992 -13.06875 -12.75977 -12.45110 -12.28472 -12.02858 -11.81469 -11.33968 -11.11290 -11.06498 -10.98885 -10.93825 -10.88018 -10.48093 -10.33781 -10.11527 -9.94549 -9.85766 -9.38338 -9.18806 -9.05296 -9.03195 -8.95096 -8.56318 -8.36897 -6.94453 -5.73986 -3.12883 0.32531 1.03191 2.28243 2.57683 3.13946 3.36225 3.40895 3.42889 3.46791 3.79553 3.92048 4.24993 4.40709 4.49083 4.69162 4.77696 4.91808 5.02486 5.11504 5.13616 5.35553 5.45284 5.48713 5.62569 5.66993 5.72138 5.78531 5.89090 5.91762 6.08028 6.15354 6.17841 6.33371 6.40893 6.45240 6.52535 6.62671 6.76885 6.86245 6.89181 6.98384 7.14452 7.35741 7.46962 7.63642 7.67338 7.80594 8.01139 8.15352 8.64911 9.06868 9.70674 10.52233 11.35308 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.003285 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.445742 B = 8522.458223 C = 9901.505736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.290 3.710 3 N -0.456 5.456 4 C 0.056 3.944 5 C 0.230 3.770 6 N -0.472 5.472 7 C 0.132 3.868 8 C -0.147 4.147 9 C -0.030 4.030 10 C 0.548 3.452 11 O -0.514 6.514 12 N -0.699 5.699 13 C 0.131 3.869 14 H 0.079 0.921 15 C -0.142 4.142 16 C 0.157 3.843 17 H 0.151 0.849 18 C -0.139 4.139 19 C -0.128 4.128 20 C 0.126 3.874 21 H 0.088 0.912 22 N -0.590 5.590 23 C -0.216 4.216 24 H 0.078 0.922 25 C -0.009 4.009 26 N -0.919 5.919 27 Si 0.914 3.086 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.287 1.287 31 N -0.587 5.587 32 H 0.426 0.574 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.173 0.827 37 H 0.153 0.847 38 H 0.400 0.600 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.724 -12.215 7.396 19.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.023 3.977 3 N -0.175 5.175 4 C -0.068 4.068 5 C -0.006 4.006 6 N -0.186 5.186 7 C -0.033 4.033 8 C -0.170 4.170 9 C -0.043 4.043 10 C 0.332 3.668 11 O -0.390 6.390 12 N -0.350 5.350 13 C 0.025 3.975 14 H 0.097 0.903 15 C -0.182 4.182 16 C 0.050 3.950 17 H 0.168 0.832 18 C -0.178 4.178 19 C -0.168 4.168 20 C 0.018 3.982 21 H 0.106 0.894 22 N -0.311 5.311 23 C -0.344 4.344 24 H 0.096 0.904 25 C -0.205 4.205 26 N -0.566 5.566 27 Si 0.745 3.255 28 H -0.212 1.212 29 H -0.217 1.217 30 H -0.213 1.213 31 N -0.203 5.203 32 H 0.266 0.734 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.190 0.810 37 H 0.171 0.829 38 H 0.236 0.764 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.532 -11.821 7.182 19.351 hybrid contribution 1.511 -1.137 -0.259 1.909 sum -12.021 -12.959 6.923 18.983 Atomic orbital electron populations 1.20418 0.83423 1.04976 1.04596 1.23957 0.96056 0.80260 0.97408 1.70342 1.00505 1.26618 1.20051 1.19227 0.92294 0.90866 1.04365 1.18896 0.86185 0.90936 1.04619 1.66192 0.96059 1.41530 1.14782 1.22511 0.94154 0.91383 0.95278 1.22309 0.98294 0.95585 1.00783 1.19839 0.90631 0.94392 0.99389 1.17914 0.84665 0.85951 0.78248 1.90809 1.31175 1.68611 1.48399 1.45930 1.07618 1.08139 1.73287 1.22659 0.99074 0.77707 0.98076 0.90298 1.23451 0.99380 1.00207 0.95209 1.23753 0.85644 0.87110 0.98453 0.83220 1.23043 0.99243 0.99732 0.95779 1.22879 0.99601 0.96910 0.97381 1.23132 0.89708 0.94436 0.90954 0.89362 1.46605 1.18703 1.59874 1.05967 1.18948 0.93367 1.26174 0.95917 0.90442 1.24698 0.98858 1.00913 0.96032 1.69490 1.38305 1.45135 1.03703 0.86162 0.83387 0.78768 0.77191 1.21241 1.21675 1.21327 1.42723 1.03594 1.10423 1.63554 0.73399 0.88979 0.89992 0.88008 0.80953 0.82947 0.76398 0.92249 0.92783 0.93333 0.92641 0.92958 0.92417 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.51 36.01 0.38 -0.07 16 2 C 0.29 3.26 8.08 -154.72 -1.25 2.01 16 3 N -0.46 -7.42 10.63 -8.07 -0.09 -7.51 16 4 C 0.06 0.93 6.85 -84.62 -0.58 0.35 16 5 C 0.23 3.22 8.46 -155.65 -1.32 1.91 16 6 N -0.47 -6.25 10.35 -12.30 -0.13 -6.38 16 7 C 0.13 1.53 11.14 -17.56 -0.20 1.33 16 8 C -0.15 -1.89 9.60 -39.02 -0.37 -2.27 16 9 C -0.03 -0.49 5.93 -104.45 -0.62 -1.10 16 10 C 0.55 10.27 7.78 -12.37 -0.10 10.18 16 11 O -0.51 -11.29 15.91 5.31 0.08 -11.21 16 12 N -0.70 -12.43 5.06 -52.36 -0.26 -12.70 16 13 C 0.13 2.49 2.73 -65.43 -0.18 2.31 16 14 H 0.08 1.51 7.36 -51.93 -0.38 1.13 16 15 C -0.14 -2.97 6.21 -24.23 -0.15 -3.12 16 16 C 0.16 3.57 4.70 -62.59 -0.29 3.27 16 17 H 0.15 3.91 5.60 -51.93 -0.29 3.62 16 18 C -0.14 -2.74 6.43 -24.28 -0.16 -2.90 16 19 C -0.13 -2.31 6.44 -24.24 -0.16 -2.47 16 20 C 0.13 2.43 5.04 -62.80 -0.32 2.12 16 21 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 22 N -0.59 -13.76 2.99 -145.53 -0.44 -14.20 16 23 C -0.22 -5.52 10.59 -15.06 -0.16 -5.68 16 24 H 0.08 1.89 7.83 -52.48 -0.41 1.48 16 25 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 26 N -0.92 -25.56 10.48 55.49 0.58 -24.98 16 27 Si 0.91 21.06 29.55 -169.99 -5.02 16.04 16 28 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 31 N -0.59 -6.06 6.23 -9.43 -0.06 -6.12 16 32 H 0.43 2.74 8.96 -40.82 -0.37 2.37 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.15 1.68 6.53 -52.49 -0.34 1.34 16 38 H 0.40 6.61 6.76 -40.82 -0.28 6.33 16 39 H 0.06 1.36 7.98 -51.93 -0.41 0.94 16 40 H 0.05 1.07 7.82 -51.93 -0.41 0.66 16 41 H 0.05 0.87 7.82 -51.93 -0.41 0.46 16 42 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.05 0.84 7.82 -51.93 -0.41 0.43 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 368.22 15.07 5.55 5.55 Total: -1.00 -34.70 368.22 -11.14 -45.83 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -5.80 Total: 10.15 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -5.56 Total: 5.52 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -0.39 Total: -71.89 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.08 Total: -11.21 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.70 -11.14 -45.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097569152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.038 kcal (2) G-P(sol) polarization free energy of solvation -34.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds