Wall clock time and date at job start Sat Apr 11 2020 06:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30286 * 124.97071 * 2 1 4 4 C 1.34654 * 109.66831 * 180.02562 * 3 2 1 5 5 C 1.40825 * 107.26427 * 359.97438 * 4 3 2 6 6 N 1.32108 * 120.46607 * 180.02562 * 5 4 3 7 7 C 1.31731 * 121.94905 * 0.02562 * 6 5 4 8 8 C 1.38337 * 121.54212 * 359.73114 * 7 6 5 9 9 C 1.39634 * 119.37836 * 0.51871 * 8 7 6 10 10 C 1.47764 * 121.07413 * 179.77266 * 9 8 7 11 11 O 1.21564 * 120.00224 * 179.72159 * 10 9 8 12 12 N 1.34775 * 119.99965 * 359.71920 * 10 9 8 13 13 C 1.46504 * 119.99764 * 179.97438 * 12 10 9 14 14 H 1.08993 * 110.55822 * 36.45036 * 13 12 10 15 15 C 1.54854 * 110.62512 * 273.54674 * 13 12 10 16 16 C 1.55848 * 103.58870 * 241.43200 * 15 13 12 17 17 H 1.08995 * 115.56029 * 159.64169 * 16 15 13 18 18 C 1.55765 * 105.10126 * 288.40455 * 16 15 13 19 19 C 1.54854 * 103.59622 * 71.60092 * 18 16 15 20 20 C 1.55839 * 103.44395 * 0.05991 * 19 18 16 21 21 H 1.09004 * 115.56261 * 159.56688 * 20 19 18 22 22 N 1.50236 * 101.05512 * 32.93720 * 20 19 18 23 23 C 1.36935 * 130.84462 * 126.01035 * 22 20 19 24 24 H 1.08007 * 119.99416 * 0.02562 * 23 22 20 25 25 C 1.38807 * 120.00594 * 180.02562 * 23 22 20 26 26 N 1.31620 * 119.99850 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00264 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.46960 * 60.00143 * 27 25 23 29 29 H 1.48494 * 109.46956 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.47042 * 300.00157 * 27 25 23 31 31 N 1.35987 * 124.97537 * 180.02562 * 2 1 3 32 32 H 0.97002 * 126.35590 * 359.95821 * 31 2 1 33 33 H 1.09000 * 109.47018 * 89.97926 * 1 2 3 34 34 H 1.09000 * 109.46556 * 209.97106 * 1 2 3 35 35 H 1.08992 * 109.47135 * 329.97269 * 1 2 3 36 36 H 1.07993 * 119.22710 * 179.97438 * 7 6 5 37 37 H 1.08001 * 120.31024 * 180.27588 * 8 7 6 38 38 H 0.96999 * 119.99997 * 0.02562 * 12 10 9 39 39 H 1.09002 * 110.62797 * 0.02562 * 15 13 12 40 40 H 1.08994 * 110.62395 * 122.86206 * 15 13 12 41 41 H 1.09002 * 110.50483 * 313.09025 * 18 16 15 42 42 H 1.09000 * 110.74516 * 190.22908 * 18 16 15 43 43 H 1.09001 * 110.62863 * 241.57172 * 19 18 16 44 44 H 1.08996 * 110.62463 * 118.54794 * 19 18 16 45 45 H 0.96996 * 120.00141 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2537 1.0676 0.0000 4 6 3.5525 0.7123 -0.0006 5 6 3.6008 -0.6952 -0.0003 6 7 4.7617 -1.3256 -0.0003 7 6 5.9077 -0.6760 0.0001 8 6 5.9559 0.7065 -0.0051 9 6 4.7637 1.4335 0.0001 10 6 4.7715 2.9111 -0.0001 11 8 3.7219 3.5245 -0.0006 12 7 5.9422 3.5788 0.0002 13 6 5.9498 5.0439 -0.0006 14 1 5.1306 5.4312 0.6050 15 6 5.8639 5.5890 -1.4475 16 6 7.1907 6.3889 -1.6167 17 1 7.5041 6.5678 -2.6452 18 6 7.0131 7.6607 -0.7351 19 6 7.0989 7.1156 0.7118 20 6 7.3188 5.5860 0.5102 21 1 7.7464 5.0561 1.3614 22 7 8.1241 5.5754 -0.7581 23 6 9.3345 5.0033 -1.0456 24 1 9.8637 4.4483 -0.2850 25 6 9.8814 5.1367 -2.3144 26 7 9.2368 5.8135 -3.2411 27 14 11.5323 4.3556 -2.7067 28 1 11.4451 2.8869 -2.5063 29 1 11.8926 4.6425 -4.1185 30 1 12.5719 4.9172 -1.8071 31 7 2.2865 -1.1143 -0.0005 32 1 1.9760 -2.0333 -0.0003 33 1 -0.3633 0.0004 -1.0277 34 1 -0.3632 -0.8903 0.5134 35 1 -0.3633 0.8897 0.5142 36 1 6.8312 -1.2359 0.0005 37 1 6.9067 1.2188 -0.0092 38 1 6.7797 3.0894 0.0003 39 1 5.8152 4.7694 -2.1644 40 1 5.0021 6.2467 -1.5594 41 1 6.0402 8.1179 -0.9160 42 1 7.8133 8.3763 -0.9239 43 1 6.1687 7.3024 1.2484 44 1 7.9435 7.5587 1.2394 45 1 9.6191 5.9070 -4.1276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097569152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:14 Heat of formation + Delta-G solvation = 79.003345 kcal Electronic energy + Delta-G solvation = -29699.654666 eV Core-core repulsion = 25718.460915 eV Total energy + Delta-G solvation = -3981.193751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.53217 -41.31390 -40.03619 -39.14336 -35.36379 -34.80135 -34.36938 -32.53975 -32.44907 -30.94079 -30.39033 -29.40369 -28.96325 -26.14094 -25.31322 -24.16172 -22.90267 -22.14077 -21.54224 -21.50868 -20.36704 -19.43677 -18.82476 -18.59080 -18.22898 -17.18251 -17.03591 -16.70875 -16.32477 -15.92480 -15.76190 -15.51131 -15.33659 -15.07232 -14.48641 -14.42253 -14.35742 -13.82347 -13.69230 -13.62412 -13.20021 -13.01197 -12.90224 -12.85183 -12.75454 -12.65007 -12.22285 -12.10026 -11.98397 -11.94951 -11.87635 -11.69569 -11.34963 -10.98984 -10.90070 -10.78067 -10.27551 -10.12943 -9.88814 -9.51066 -8.84254 -7.71481 -5.11202 -0.73788 0.03830 1.43998 1.53158 1.55125 1.60292 1.60829 1.88624 2.11910 2.54478 2.77571 2.96733 3.33063 3.41437 3.46556 3.57415 3.62024 3.84277 4.00863 4.07006 4.10592 4.28266 4.34746 4.47301 4.49771 4.51621 4.62092 4.67227 4.69853 4.71894 4.85586 4.86566 4.90475 4.95638 5.10469 5.10759 5.18317 5.20093 5.40560 5.46179 5.54176 5.61114 5.71654 5.92814 6.13390 6.27053 6.57968 6.69266 6.75402 7.08538 7.22749 7.76588 8.62560 9.36440 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.003285 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.445742 B = 8522.458223 C = 9901.505736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.306 3.694 3 N -0.519 5.519 4 C 0.027 3.973 5 C 0.218 3.782 6 N -0.472 5.472 7 C 0.135 3.865 8 C -0.133 4.133 9 C -0.067 4.067 10 C 0.548 3.452 11 O -0.555 6.555 12 N -0.694 5.694 13 C 0.141 3.859 14 H 0.083 0.917 15 C -0.132 4.132 16 C 0.144 3.856 17 H 0.113 0.887 18 C -0.132 4.132 19 C -0.119 4.119 20 C 0.130 3.870 21 H 0.109 0.891 22 N -0.608 5.608 23 C -0.214 4.214 24 H 0.090 0.910 25 C -0.068 4.068 26 N -0.950 5.950 27 Si 0.974 3.026 28 H -0.274 1.274 29 H -0.305 1.305 30 H -0.282 1.282 31 N -0.570 5.570 32 H 0.445 0.555 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.216 0.784 37 H 0.170 0.830 38 H 0.407 0.593 39 H 0.029 0.971 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.040 0.960 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.071 -14.399 9.216 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.039 3.961 3 N -0.239 5.239 4 C -0.096 4.096 5 C -0.019 4.019 6 N -0.185 5.185 7 C -0.031 4.031 8 C -0.155 4.155 9 C -0.080 4.080 10 C 0.335 3.665 11 O -0.433 6.433 12 N -0.344 5.344 13 C 0.035 3.965 14 H 0.101 0.899 15 C -0.173 4.173 16 C 0.037 3.963 17 H 0.131 0.869 18 C -0.171 4.171 19 C -0.159 4.159 20 C 0.023 3.977 21 H 0.127 0.873 22 N -0.330 5.330 23 C -0.342 4.342 24 H 0.108 0.892 25 C -0.261 4.261 26 N -0.600 5.600 27 Si 0.804 3.196 28 H -0.200 1.200 29 H -0.232 1.232 30 H -0.209 1.209 31 N -0.188 5.188 32 H 0.289 0.711 33 H 0.127 0.873 34 H 0.138 0.862 35 H 0.116 0.884 36 H 0.232 0.768 37 H 0.187 0.813 38 H 0.244 0.756 39 H 0.048 0.952 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.059 0.941 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -13.891 -14.057 9.044 21.734 hybrid contribution 1.523 -0.509 -0.816 1.801 sum -12.368 -14.566 8.228 20.805 Atomic orbital electron populations 1.20705 0.79694 1.06668 1.06133 1.24879 0.97705 0.79423 0.94060 1.70308 1.01097 1.29265 1.23273 1.19555 0.92644 0.92308 1.05138 1.19108 0.87510 0.90256 1.05061 1.66341 0.96236 1.41480 1.14474 1.23207 0.95118 0.91034 0.93730 1.22554 0.97713 0.96292 0.98987 1.19808 0.92288 0.92980 1.02876 1.18313 0.84041 0.87164 0.76986 1.90767 1.32438 1.69746 1.50391 1.45836 1.07862 1.07672 1.73042 1.22491 0.99112 0.78491 0.96455 0.89863 1.23308 0.98811 0.99198 0.95977 1.23569 0.86272 0.89023 0.97418 0.86918 1.22938 0.99751 0.98016 0.96424 1.22839 1.01319 0.95476 0.96247 1.23336 0.88792 0.95600 0.89978 0.87325 1.46785 1.18516 1.59920 1.07732 1.19363 0.93913 1.25030 0.95928 0.89196 1.25444 1.01962 1.02306 0.96349 1.69756 1.39562 1.47113 1.03556 0.85203 0.79974 0.78514 0.75933 1.19983 1.23215 1.20885 1.42707 1.02212 1.11360 1.62472 0.71104 0.87285 0.86177 0.88362 0.76794 0.81295 0.75630 0.95187 0.91971 0.91382 0.94142 0.90149 0.91847 0.94677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.51 71.24 0.75 0.04 16 2 C 0.31 6.54 8.08 137.89 1.11 7.65 16 3 N -0.52 -17.14 10.63 -179.45 -1.91 -19.05 16 4 C 0.03 0.91 6.85 40.01 0.27 1.18 16 5 C 0.22 5.87 8.46 133.92 1.13 7.01 16 6 N -0.47 -11.58 10.35 -192.84 -2.00 -13.58 16 7 C 0.13 2.79 11.14 84.73 0.94 3.74 16 8 C -0.13 -3.27 9.60 22.63 0.22 -3.05 16 9 C -0.07 -2.20 5.93 -19.75 -0.12 -2.32 16 10 C 0.55 20.99 7.78 86.76 0.68 21.67 16 11 O -0.55 -25.18 15.91 -3.92 -0.06 -25.24 16 12 N -0.69 -24.59 5.06 -437.84 -2.21 -26.80 16 13 C 0.14 5.27 2.73 46.61 0.13 5.40 16 14 H 0.08 3.10 7.36 -2.39 -0.02 3.08 16 15 C -0.13 -5.65 6.21 32.21 0.20 -5.45 16 16 C 0.14 6.67 4.70 46.11 0.22 6.89 16 17 H 0.11 6.19 5.60 -2.39 -0.01 6.18 16 18 C -0.13 -5.15 6.43 32.18 0.21 -4.94 16 19 C -0.12 -4.04 6.44 32.21 0.21 -3.84 16 20 C 0.13 4.80 5.04 46.23 0.23 5.03 16 21 H 0.11 3.57 8.14 -2.39 -0.02 3.56 16 22 N -0.61 -28.19 2.99 -614.33 -1.84 -30.03 16 23 C -0.21 -10.83 10.59 84.03 0.89 -9.94 16 24 H 0.09 4.23 7.83 -2.91 -0.02 4.21 16 25 C -0.07 -3.65 5.50 84.86 0.47 -3.18 16 26 N -0.95 -54.73 10.48 21.65 0.23 -54.50 16 27 Si 0.97 43.58 29.55 68.60 2.03 45.61 16 28 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 29 H -0.31 -14.24 7.11 99.48 0.71 -13.54 16 30 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 31 N -0.57 -10.79 6.23 -183.76 -1.14 -11.94 16 32 H 0.45 4.56 8.96 -92.71 -0.83 3.73 16 33 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.22 2.48 8.06 -2.91 -0.02 2.46 16 37 H 0.17 3.42 6.53 -2.91 -0.02 3.40 16 38 H 0.41 13.16 6.76 -92.71 -0.63 12.53 16 39 H 0.03 1.42 7.98 -2.39 -0.02 1.40 16 40 H 0.06 2.49 7.82 -2.39 -0.02 2.47 16 41 H 0.07 2.35 7.82 -2.39 -0.02 2.34 16 42 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.08 2.31 7.82 -2.39 -0.02 2.29 16 44 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.24 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -79.34 368.22 0.24 -79.10 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: -0.40 Total: 30.55 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: 7.54 Total: 25.89 kcal Atomic # 7 Polarization: -147.04 SS G_CDS: -8.87 Total: -155.91 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.06 Total: -25.24 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -79.34 0.24 -79.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097569152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.106 kcal (2) G-P(sol) polarization free energy of solvation -79.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds