Wall clock time and date at job start Sat Apr 11 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46874 * 2 1 4 4 H 1.08999 * 109.47204 * 305.48293 * 3 2 1 5 5 S 1.81397 * 109.47063 * 185.48017 * 3 2 1 6 6 C 1.81403 * 102.99886 * 67.23182 * 5 3 2 7 7 C 1.50705 * 109.47101 * 65.48216 * 3 2 1 8 8 O 1.21272 * 120.00116 * 35.00183 * 7 3 2 9 9 N 1.34777 * 119.99585 * 214.99656 * 7 3 2 10 10 C 1.46503 * 119.99546 * 179.97438 * 9 7 3 11 11 H 1.08992 * 110.85955 * 37.34139 * 10 9 7 12 12 C 1.54629 * 110.96981 * 273.54602 * 10 9 7 13 13 C 1.51285 * 104.19523 * 217.08561 * 12 10 9 14 14 O 1.21280 * 124.94215 * 196.27634 * 13 12 10 15 15 N 1.34416 * 110.11559 * 16.25606 * 13 12 10 16 16 C 1.46506 * 124.34879 * 180.40972 * 15 13 12 17 17 C 1.53495 * 114.20259 * 300.02197 * 16 15 13 18 18 N 1.47064 * 87.98753 * 87.51977 * 17 16 15 19 19 C 1.36938 * 136.05892 * 206.86122 * 18 17 16 20 20 H 1.07994 * 120.00091 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99932 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00204 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00048 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47242 * 59.99759 * 23 21 19 25 25 H 1.48508 * 109.47344 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47200 * 299.99444 * 23 21 19 27 27 C 1.47073 * 87.88559 * 27.11919 * 18 17 16 28 28 C 1.46763 * 111.30510 * 0.67029 * 15 13 12 29 29 H 1.09005 * 109.46910 * 184.47831 * 1 2 3 30 30 H 1.08993 * 109.47357 * 304.48168 * 1 2 3 31 31 H 1.09006 * 109.46846 * 64.48509 * 1 2 3 32 32 H 1.08993 * 109.47376 * 239.99908 * 2 1 3 33 33 H 1.09005 * 109.47054 * 119.99687 * 2 1 3 34 34 H 1.08992 * 109.47103 * 294.79785 * 6 5 3 35 35 H 1.09000 * 109.47004 * 54.79982 * 6 5 3 36 36 H 1.09010 * 109.46966 * 174.80107 * 6 5 3 37 37 H 0.96995 * 120.00456 * 0.02562 * 9 7 3 38 38 H 1.09002 * 110.48474 * 98.40919 * 12 10 9 39 39 H 1.08997 * 110.60059 * 335.82189 * 12 10 9 40 40 H 1.09000 * 113.28354 * 166.95705 * 16 15 13 41 41 H 1.08994 * 113.47245 * 332.74101 * 17 16 15 42 42 H 1.09000 * 113.46502 * 202.30131 * 17 16 15 43 43 H 0.96994 * 120.00148 * 179.97438 * 22 21 19 44 44 H 1.08997 * 113.46476 * 87.65490 * 27 18 17 45 45 H 1.08998 * 113.46668 * 218.10207 * 27 18 17 46 46 H 1.08998 * 110.24545 * 101.71209 * 28 15 13 47 47 H 1.08998 * 110.25158 * 223.72259 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5986 1.9839 -0.8368 5 16 3.8465 1.4452 -0.1633 6 6 4.1052 0.8139 -1.8442 7 6 1.6515 2.1126 1.2927 8 8 1.6294 1.4746 2.3238 9 7 1.3287 3.4211 1.3029 10 6 0.9505 4.0725 2.5596 11 1 1.5452 3.6902 3.3891 12 6 -0.5611 3.9027 2.8378 13 6 -0.9738 5.2184 3.4601 14 8 -2.0017 5.4030 4.0766 15 7 -0.0352 6.1529 3.2308 16 6 -0.1148 7.5376 3.7025 17 6 -1.3328 8.3116 3.1797 18 7 -2.0904 7.7929 4.3285 19 6 -3.4045 7.5206 4.6013 20 1 -4.1596 7.6960 3.8495 21 6 -3.7658 7.0191 5.8442 22 7 -2.8454 6.8048 6.7604 23 14 -5.5582 6.6469 6.2161 24 1 -6.0615 5.6296 5.2585 25 1 -5.6785 6.1259 7.6015 26 1 -6.3596 7.8902 6.0842 27 6 -0.8165 7.7014 5.0578 28 6 1.0766 5.6095 2.4417 29 1 -0.3633 -1.0246 0.0802 30 1 -0.3634 0.5818 0.8470 31 1 -0.3633 0.4427 -0.9275 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.7620 -0.2189 -1.9012 35 1 3.5428 1.4233 -2.5517 36 1 5.1664 0.8583 -2.0897 37 1 1.3460 3.9314 0.4783 38 1 -0.7309 3.0814 3.5341 39 1 -1.1053 3.7327 1.9088 40 1 0.8284 8.0771 3.6160 41 1 -1.6983 7.9485 2.2192 42 1 -1.2009 9.3934 3.1995 43 1 -3.0979 6.4547 7.6290 44 1 -0.5471 8.6207 5.5778 45 1 -0.7430 6.8195 5.6941 46 1 0.9870 5.9193 1.4006 47 1 2.0294 5.9413 2.8542 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108533306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:41 Heat of formation + Delta-G solvation = 21.478996 kcal Electronic energy + Delta-G solvation = -28455.681260 eV Core-core repulsion = 24575.144266 eV Total energy + Delta-G solvation = -3880.536994 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.57616 -39.59929 -37.25209 -35.91380 -34.79166 -33.89821 -31.89195 -30.18472 -29.40826 -28.24632 -27.35980 -26.69955 -24.48512 -23.44441 -23.04680 -21.34338 -20.72397 -20.26087 -18.07284 -17.68169 -16.97018 -16.68663 -16.49996 -15.71342 -15.37565 -15.32648 -14.86119 -14.55905 -14.30149 -14.15495 -13.94179 -13.76451 -13.50390 -13.34499 -13.25007 -13.20796 -13.02403 -12.77569 -12.38157 -12.24226 -12.20840 -11.81060 -11.65202 -11.28486 -11.20182 -11.13022 -10.88550 -10.63062 -10.52840 -10.38501 -10.12211 -9.91445 -9.78122 -9.43560 -9.20274 -8.70013 -8.30605 -8.16237 -7.82248 -6.52671 -5.43710 -2.71442 0.85991 1.98074 2.61939 2.76506 3.54315 3.58227 3.60884 3.61393 3.62013 4.11084 4.24702 4.47506 4.63196 4.64860 4.68593 4.70596 4.76844 4.89955 5.01294 5.03231 5.20520 5.21155 5.32565 5.39157 5.48767 5.54575 5.58941 5.73139 5.77741 5.81193 5.86238 5.93859 6.03333 6.07215 6.26805 6.38410 6.53417 6.61483 6.97238 7.17027 7.36162 7.57546 7.81654 7.91278 7.96305 8.26884 9.23466 9.31912 10.04920 10.92549 11.75716 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019681 B = 0.002645 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.315345 B =10584.050407 C =11454.021605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C -0.085 4.085 4 H 0.105 0.895 5 S -0.216 6.216 6 C -0.128 4.128 7 C 0.539 3.461 8 O -0.515 6.515 9 N -0.712 5.712 10 C 0.136 3.864 11 H 0.109 0.891 12 C -0.166 4.166 13 C 0.487 3.513 14 O -0.411 6.411 15 N -0.605 5.605 16 C 0.097 3.903 17 C 0.102 3.898 18 N -0.586 5.586 19 C -0.184 4.184 20 H 0.069 0.931 21 C 0.004 3.996 22 N -0.917 5.917 23 Si 0.902 3.098 24 H -0.288 1.288 25 H -0.293 1.293 26 H -0.291 1.291 27 C 0.150 3.850 28 C 0.110 3.890 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.402 0.598 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.034 0.966 42 H 0.037 0.963 43 H 0.246 0.754 44 H 0.030 0.970 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.357 -10.349 -20.132 27.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.147 4.147 3 C -0.216 4.216 4 H 0.123 0.877 5 S 0.011 5.989 6 C -0.296 4.296 7 C 0.323 3.677 8 O -0.389 6.389 9 N -0.365 5.365 10 C 0.031 3.969 11 H 0.127 0.873 12 C -0.208 4.208 13 C 0.269 3.731 14 O -0.275 6.275 15 N -0.343 5.343 16 C -0.007 4.007 17 C -0.026 4.026 18 N -0.311 5.311 19 C -0.311 4.311 20 H 0.087 0.913 21 C -0.192 4.192 22 N -0.565 5.565 23 Si 0.734 3.266 24 H -0.215 1.215 25 H -0.219 1.219 26 H -0.218 1.218 27 C 0.023 3.977 28 C -0.015 4.015 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.123 0.877 37 H 0.237 0.763 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.047 0.953 45 H 0.096 0.904 46 H 0.083 0.917 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 16.200 -10.456 -18.032 26.399 hybrid contribution -1.758 -0.247 -1.324 2.215 sum 14.442 -10.702 -19.356 26.415 Atomic orbital electron populations 1.21841 0.94611 1.02764 1.02113 1.21714 0.96804 0.92243 1.03898 1.23436 0.96587 1.01575 1.00051 0.87650 1.87225 1.04617 1.86639 1.20387 1.23508 1.06457 1.04117 0.95555 1.19517 0.76895 0.81958 0.89371 1.90755 1.51427 1.63541 1.33194 1.45911 1.69512 1.09868 1.11197 1.21872 0.95941 0.92091 0.86988 0.87313 1.22834 0.95499 0.99263 1.03204 1.20637 0.84896 0.85313 0.82256 1.91235 1.21665 1.80102 1.34518 1.47724 1.21075 1.10154 1.55382 1.22690 0.97178 0.80595 1.00236 1.22854 0.90768 0.95680 0.93339 1.45183 1.02636 1.72931 1.10377 1.18461 0.80378 1.35209 0.97099 0.91314 1.24510 0.96601 1.01649 0.96393 1.69772 1.30806 1.51011 1.04936 0.86361 0.85490 0.77820 0.76944 1.21511 1.21928 1.21814 1.22339 0.83850 0.99792 0.91747 1.22012 0.91640 0.91473 0.96340 0.91799 0.91974 0.92728 0.91167 0.89222 0.90123 0.90209 0.87664 0.76268 0.88413 0.88772 0.89695 0.94754 0.94536 0.94391 0.95250 0.90446 0.91723 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.80 37.16 0.36 -0.85 16 2 C -0.11 -0.83 5.13 -26.73 -0.14 -0.97 16 3 C -0.08 -0.67 2.63 -27.88 -0.07 -0.74 16 4 H 0.11 0.58 8.11 -51.92 -0.42 0.16 16 5 S -0.22 -1.75 21.76 -107.50 -2.34 -4.09 16 6 C -0.13 -0.56 10.42 101.05 1.05 0.49 16 7 C 0.54 5.84 5.81 -10.98 -0.06 5.78 16 8 O -0.51 -7.68 15.77 5.56 0.09 -7.59 16 9 N -0.71 -6.57 5.18 -52.13 -0.27 -6.84 16 10 C 0.14 1.62 3.44 -66.19 -0.23 1.39 16 11 H 0.11 1.44 7.72 -51.93 -0.40 1.04 16 12 C -0.17 -2.53 6.58 -26.74 -0.18 -2.70 16 13 C 0.49 9.86 7.54 -10.86 -0.08 9.77 16 14 O -0.41 -10.96 12.43 5.56 0.07 -10.89 16 15 N -0.60 -10.29 3.18 -164.50 -0.52 -10.81 16 16 C 0.10 1.79 5.13 -67.81 -0.35 1.44 16 17 C 0.10 2.12 8.34 -8.50 -0.07 2.05 16 18 N -0.59 -15.58 2.28 -184.77 -0.42 -16.00 16 19 C -0.18 -5.48 8.89 -15.06 -0.13 -5.61 16 20 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 21 C 0.00 0.13 5.05 -17.43 -0.09 0.04 16 22 N -0.92 -28.91 11.51 55.49 0.64 -28.27 16 23 Si 0.90 24.05 29.55 -169.99 -5.02 19.02 16 24 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 25 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 26 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 27 C 0.15 3.61 6.42 -8.50 -0.05 3.55 16 28 C 0.11 1.25 7.07 -3.02 -0.02 1.23 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.63 7.16 -51.93 -0.37 0.25 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.41 6.98 -51.93 -0.36 0.04 16 33 H 0.09 0.88 7.66 -51.93 -0.40 0.48 16 34 H 0.08 0.30 7.31 -51.93 -0.38 -0.08 16 35 H 0.08 0.26 8.14 -51.92 -0.42 -0.16 16 36 H 0.10 0.37 8.14 -51.92 -0.42 -0.05 16 37 H 0.40 2.53 8.34 -40.82 -0.34 2.19 16 38 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 39 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 40 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.25 7.64 8.31 -40.82 -0.34 7.31 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 2.16 6.60 -51.93 -0.34 1.81 16 46 H 0.06 0.59 7.77 -51.93 -0.40 0.19 16 47 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 388.54 15.07 5.86 5.86 Total: -1.00 -38.13 388.54 -9.60 -47.73 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -7.61 Total: -3.00 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: -0.06 Total: 14.87 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: -0.58 Total: -61.92 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.16 Total: -18.48 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -5.02 Total: 19.02 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.34 Total: -4.09 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.13 -9.60 -47.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108533306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.212 kcal (2) G-P(sol) polarization free energy of solvation -38.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds