Wall clock time and date at job start Sat Apr 11 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47076 * 2 1 4 4 H 1.08994 * 109.46775 * 303.28409 * 3 2 1 5 5 C 1.50702 * 109.47040 * 183.28378 * 3 2 1 6 6 N 1.34771 * 120.00113 * 85.55608 * 5 3 2 7 7 O 1.21281 * 119.99849 * 265.55689 * 5 3 2 8 8 N 1.46904 * 109.47193 * 63.28367 * 3 2 1 9 9 C 1.50643 * 111.00001 * 163.21753 * 8 3 2 10 10 H 1.09006 * 115.88189 * 296.65358 * 9 8 3 11 11 C 1.55842 * 101.02991 * 170.24058 * 9 8 3 12 12 C 1.55519 * 103.46468 * 327.08544 * 11 9 8 13 13 C 1.50855 * 110.87856 * 271.39697 * 8 3 2 14 14 H 1.09002 * 116.02315 * 63.16081 * 13 8 3 15 15 C 1.55849 * 100.93659 * 297.45176 * 13 8 3 16 16 H 1.09002 * 110.61260 * 85.78273 * 15 13 8 17 17 N 1.46498 * 110.61350 * 208.61748 * 15 13 8 18 18 C 1.34778 * 119.99576 * 273.24494 * 17 15 13 19 19 O 1.21278 * 120.00126 * 0.02562 * 18 17 15 20 20 C 1.50699 * 119.99863 * 179.97438 * 18 17 15 21 21 S 1.80998 * 109.47063 * 180.02562 * 20 18 17 22 22 C 1.76208 * 99.99842 * 180.02562 * 21 20 18 23 23 H 1.07998 * 120.00197 * 359.97438 * 22 21 20 24 24 C 1.38795 * 120.00028 * 180.02562 * 22 21 20 25 25 N 1.31640 * 119.99908 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00290 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47121 * 59.99594 * 26 24 22 28 28 H 1.48499 * 109.47316 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47039 * 299.99945 * 26 24 22 30 30 C 1.54839 * 103.65728 * 327.20187 * 15 13 8 31 31 H 1.09007 * 109.47309 * 288.73461 * 1 2 3 32 32 H 1.09002 * 109.47323 * 48.73496 * 1 2 3 33 33 H 1.09002 * 109.47413 * 168.73513 * 1 2 3 34 34 H 1.08993 * 109.46741 * 240.00048 * 2 1 3 35 35 H 1.09001 * 109.46765 * 120.00028 * 2 1 3 36 36 H 0.97005 * 119.99687 * 0.02562 * 6 5 3 37 37 H 0.97000 * 120.00146 * 179.97438 * 6 5 3 38 38 H 1.08995 * 110.61551 * 85.51072 * 11 9 8 39 39 H 1.08997 * 110.61527 * 208.50344 * 11 9 8 40 40 H 1.09003 * 110.48504 * 241.47305 * 12 11 9 41 41 H 1.08997 * 110.94471 * 118.50109 * 12 11 9 42 42 H 0.96994 * 120.00257 * 93.24536 * 17 15 13 43 43 H 1.08997 * 109.47142 * 300.00305 * 20 18 17 44 44 H 1.08998 * 109.46953 * 59.99791 * 20 18 17 45 45 H 0.97002 * 119.99675 * 180.02562 * 25 24 22 46 46 H 1.08999 * 110.61781 * 118.43243 * 30 15 13 47 47 H 1.08999 * 110.61152 * 241.26065 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6294 1.9730 -0.8591 5 6 3.5448 1.4433 -0.0814 6 7 4.1548 1.3755 -1.2812 7 8 4.2069 1.5050 0.9329 8 7 1.6162 2.1118 1.2372 9 6 2.4158 3.3664 1.4734 10 1 3.4854 3.2265 1.6303 11 6 1.6261 4.0051 2.6554 12 6 0.1554 3.5813 2.3793 13 6 0.2587 2.7474 1.0667 14 1 -0.5669 2.0650 0.8647 15 6 0.5589 3.7901 -0.0521 16 1 0.4693 3.3324 -1.0373 17 7 -0.3380 4.9428 0.0631 18 6 -1.5480 4.9169 -0.5300 19 8 -1.8945 3.9393 -1.1585 20 6 -2.4708 6.1023 -0.4111 21 16 -4.0063 5.7638 -1.3076 22 6 -4.8722 7.2695 -1.0107 23 1 -4.4131 8.0492 -0.4211 24 6 -6.1447 7.4530 -1.5336 25 7 -6.7045 6.5023 -2.2518 26 14 -7.0624 9.0493 -1.2195 27 1 -6.2811 10.1859 -1.7697 28 1 -8.3905 8.9954 -1.8818 29 1 -7.2450 9.2359 0.2424 30 6 2.0238 4.2097 0.2228 31 1 -0.3634 0.3301 0.9733 32 1 -0.3634 0.6778 -0.7725 33 1 -0.3634 -1.0079 -0.2007 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.6252 1.3265 -2.0925 37 1 5.1234 1.3763 -1.3336 38 1 1.9684 3.6015 3.6082 39 1 1.7235 5.0906 2.6400 40 1 -0.4726 4.4592 2.2277 41 1 -0.2329 2.9690 3.1932 42 1 -0.0610 5.7244 0.5661 43 1 -2.6964 6.2832 0.6399 44 1 -1.9881 6.9825 -0.8357 45 1 -7.5937 6.6307 -2.6175 46 1 2.6608 3.9576 -0.6251 47 1 2.0829 5.2758 0.4420 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108952336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:47 Heat of formation + Delta-G solvation = -42.544455 kcal Electronic energy + Delta-G solvation = -28737.609121 eV Core-core repulsion = 24854.295861 eV Total energy + Delta-G solvation = -3883.313259 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.86278 -39.54493 -38.51336 -35.18849 -34.08454 -33.60819 -32.45019 -31.05107 -30.12258 -29.52095 -27.97628 -26.56574 -25.48586 -22.51143 -22.32632 -21.37236 -20.77459 -19.89980 -19.50724 -17.94489 -17.70489 -17.24728 -16.69233 -16.39967 -15.84016 -15.80201 -15.01595 -14.82384 -14.70509 -14.45223 -14.16108 -14.06758 -13.35069 -13.16190 -13.15082 -12.95423 -12.70436 -12.49610 -12.42725 -12.19369 -12.14316 -11.94132 -11.79308 -11.23818 -11.17906 -11.07032 -11.05829 -10.99421 -10.78757 -10.67583 -10.30379 -10.04838 -9.91660 -9.84692 -9.48734 -9.32896 -9.07987 -8.48407 -8.27420 -6.52679 -6.24005 -3.94748 2.26220 2.94317 3.01797 3.05898 3.21778 3.25752 3.28696 3.55953 3.75035 4.18292 4.27948 4.36160 4.48286 4.51005 4.73435 4.80577 4.88940 4.93501 5.05317 5.09554 5.10801 5.11370 5.21593 5.28314 5.30918 5.48416 5.50180 5.58575 5.61201 5.68085 5.78653 5.84618 5.87613 5.92526 6.01700 6.05666 6.07872 6.10548 6.20499 6.36857 6.40510 6.60171 6.65224 6.98530 7.56941 7.64317 7.91405 8.32627 8.55282 9.21378 10.83329 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022519 B = 0.002504 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.101546 B =11179.641157 C =11597.414632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.102 4.102 3 C 0.042 3.958 4 H 0.075 0.925 5 C 0.521 3.479 6 N -0.856 5.856 7 O -0.528 6.528 8 N -0.464 5.464 9 C 0.041 3.959 10 H 0.134 0.866 11 C -0.113 4.113 12 C -0.115 4.115 13 C 0.032 3.968 14 H 0.129 0.871 15 C 0.116 3.884 16 H 0.090 0.910 17 N -0.725 5.725 18 C 0.533 3.467 19 O -0.516 6.516 20 C -0.154 4.154 21 S -0.058 6.058 22 C -0.537 4.537 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 C -0.164 4.164 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.402 0.598 37 H 0.401 0.599 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.398 0.602 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.269 0.731 46 H 0.069 0.931 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.727 -8.600 4.942 23.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.140 4.140 3 C -0.071 4.071 4 H 0.093 0.907 5 C 0.305 3.695 6 N -0.420 5.420 7 O -0.403 6.403 8 N -0.188 5.188 9 C -0.067 4.067 10 H 0.151 0.849 11 C -0.151 4.151 12 C -0.154 4.154 13 C -0.077 4.077 14 H 0.147 0.853 15 C 0.009 3.991 16 H 0.108 0.892 17 N -0.379 5.379 18 C 0.319 3.681 19 O -0.390 6.390 20 C -0.305 4.305 21 S 0.168 5.832 22 C -0.685 4.685 23 H 0.090 0.910 24 C -0.135 4.135 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.200 1.200 28 H -0.208 1.208 29 H -0.199 1.199 30 C -0.204 4.204 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.230 0.770 37 H 0.232 0.768 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 21.293 -10.725 4.995 24.359 hybrid contribution 0.067 3.149 -0.185 3.155 sum 21.360 -7.577 4.810 23.169 Atomic orbital electron populations 1.21941 0.94415 1.02097 1.02870 1.21391 0.97196 0.92860 1.02558 1.22057 0.91225 0.98640 0.95146 0.90698 1.20594 0.90583 0.74965 0.83323 1.43943 1.11376 1.78027 1.08704 1.90704 1.66799 1.48178 1.34620 1.67821 1.02285 1.20176 1.28510 1.24843 0.99845 0.87718 0.94282 0.84882 1.22699 0.94889 0.99354 0.98171 1.22694 0.96505 0.99669 0.96483 1.25219 0.92813 0.94317 0.95351 0.85320 1.22567 0.88511 0.87711 1.00312 0.89185 1.46040 1.17050 1.18831 1.55994 1.20336 0.81153 0.88795 0.77805 1.90688 1.74031 1.34317 1.39977 1.23536 1.02432 0.98529 1.05984 1.85371 1.06698 1.24521 1.66573 1.22826 1.03949 1.02497 1.39201 0.91001 1.24987 0.96430 0.97609 0.94514 1.70009 1.15604 1.32463 1.32227 0.86228 0.78598 0.82076 0.78633 1.19959 1.20796 1.19915 1.23611 0.95184 1.01959 0.99613 0.91463 0.92139 0.92401 0.91604 0.90544 0.76959 0.76782 0.90959 0.91418 0.90591 0.90996 0.76698 0.89215 0.89327 0.92115 0.91247 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 8.33 37.16 0.31 -1.17 16 2 C -0.10 -0.89 5.61 -26.73 -0.15 -1.04 16 3 C 0.04 0.39 1.51 -68.86 -0.10 0.28 16 4 H 0.08 0.67 5.30 -51.93 -0.28 0.39 16 5 C 0.52 4.87 5.85 -10.99 -0.06 4.81 16 6 N -0.86 -4.78 8.87 31.22 0.28 -4.50 16 7 O -0.53 -6.82 15.04 5.56 0.08 -6.74 16 8 N -0.46 -4.90 5.16 -198.99 -1.03 -5.92 16 9 C 0.04 0.41 3.88 -62.56 -0.24 0.17 16 10 H 0.13 1.50 5.85 -51.93 -0.30 1.20 16 11 C -0.11 -1.05 6.46 -23.87 -0.15 -1.20 16 12 C -0.12 -1.21 6.35 -23.87 -0.15 -1.36 16 13 C 0.03 0.36 3.96 -62.44 -0.25 0.11 16 14 H 0.13 1.61 5.31 -51.93 -0.28 1.34 16 15 C 0.12 1.30 2.26 -65.44 -0.15 1.15 16 16 H 0.09 1.15 6.41 -51.93 -0.33 0.82 16 17 N -0.72 -8.99 3.65 -51.40 -0.19 -9.17 16 18 C 0.53 9.30 7.85 -10.99 -0.09 9.21 16 19 O -0.52 -10.91 15.57 5.56 0.09 -10.82 16 20 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 21 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 22 C -0.54 -15.05 9.50 30.94 0.29 -14.76 16 23 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 24 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 25 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 26 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 30 C -0.16 -1.50 5.35 -24.24 -0.13 -1.63 16 31 H 0.07 0.70 6.32 -51.92 -0.33 0.37 16 32 H 0.06 0.64 7.88 -51.93 -0.41 0.23 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.40 1.35 8.83 -40.82 -0.36 0.99 16 37 H 0.40 1.81 8.93 -40.82 -0.36 1.44 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.54 7.82 -51.93 -0.41 0.13 16 40 H 0.08 0.81 6.47 -51.93 -0.34 0.48 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.40 3.96 8.00 -40.82 -0.33 3.64 16 43 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 44 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.07 0.60 7.31 -51.93 -0.38 0.22 16 47 H 0.08 0.68 7.36 -51.93 -0.38 0.30 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -35.06 376.40 -9.33 -44.38 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.98 Total: 6.02 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -0.75 Total: -6.19 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -0.20 Total: -44.73 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.17 Total: -17.56 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.06 -9.33 -44.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108952336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.838 kcal (2) G-P(sol) polarization free energy of solvation -35.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds