Wall clock time and date at job start Sat Apr 11 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47076 * 2 1 4 4 H 1.08994 * 109.46775 * 303.28409 * 3 2 1 5 5 C 1.50702 * 109.47040 * 183.28378 * 3 2 1 6 6 N 1.34771 * 120.00113 * 85.55608 * 5 3 2 7 7 O 1.21281 * 119.99849 * 265.55689 * 5 3 2 8 8 N 1.46904 * 109.47193 * 63.28367 * 3 2 1 9 9 C 1.50643 * 111.00001 * 163.21753 * 8 3 2 10 10 H 1.09006 * 115.88189 * 296.65358 * 9 8 3 11 11 C 1.55842 * 101.02991 * 170.24058 * 9 8 3 12 12 C 1.55519 * 103.46468 * 327.08544 * 11 9 8 13 13 C 1.50855 * 110.87856 * 271.39697 * 8 3 2 14 14 H 1.09002 * 116.02315 * 63.16081 * 13 8 3 15 15 C 1.55849 * 100.93659 * 297.45176 * 13 8 3 16 16 H 1.09002 * 110.61260 * 85.78273 * 15 13 8 17 17 N 1.46498 * 110.61350 * 208.61748 * 15 13 8 18 18 C 1.34778 * 119.99576 * 273.24494 * 17 15 13 19 19 O 1.21278 * 120.00126 * 0.02562 * 18 17 15 20 20 C 1.50699 * 119.99863 * 179.97438 * 18 17 15 21 21 S 1.80998 * 109.47063 * 180.02562 * 20 18 17 22 22 C 1.76208 * 99.99842 * 180.02562 * 21 20 18 23 23 H 1.07998 * 120.00197 * 359.97438 * 22 21 20 24 24 C 1.38795 * 120.00028 * 180.02562 * 22 21 20 25 25 N 1.31640 * 119.99908 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00290 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47121 * 59.99594 * 26 24 22 28 28 H 1.48499 * 109.47316 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47039 * 299.99945 * 26 24 22 30 30 C 1.54839 * 103.65728 * 327.20187 * 15 13 8 31 31 H 1.09007 * 109.47309 * 288.73461 * 1 2 3 32 32 H 1.09002 * 109.47323 * 48.73496 * 1 2 3 33 33 H 1.09002 * 109.47413 * 168.73513 * 1 2 3 34 34 H 1.08993 * 109.46741 * 240.00048 * 2 1 3 35 35 H 1.09001 * 109.46765 * 120.00028 * 2 1 3 36 36 H 0.97005 * 119.99687 * 0.02562 * 6 5 3 37 37 H 0.97000 * 120.00146 * 179.97438 * 6 5 3 38 38 H 1.08995 * 110.61551 * 85.51072 * 11 9 8 39 39 H 1.08997 * 110.61527 * 208.50344 * 11 9 8 40 40 H 1.09003 * 110.48504 * 241.47305 * 12 11 9 41 41 H 1.08997 * 110.94471 * 118.50109 * 12 11 9 42 42 H 0.96994 * 120.00257 * 93.24536 * 17 15 13 43 43 H 1.08997 * 109.47142 * 300.00305 * 20 18 17 44 44 H 1.08998 * 109.46953 * 59.99791 * 20 18 17 45 45 H 0.97002 * 119.99675 * 180.02562 * 25 24 22 46 46 H 1.08999 * 110.61781 * 118.43243 * 30 15 13 47 47 H 1.08999 * 110.61152 * 241.26065 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6294 1.9730 -0.8591 5 6 3.5448 1.4433 -0.0814 6 7 4.1548 1.3755 -1.2812 7 8 4.2069 1.5050 0.9329 8 7 1.6162 2.1118 1.2372 9 6 2.4158 3.3664 1.4734 10 1 3.4854 3.2265 1.6303 11 6 1.6261 4.0051 2.6554 12 6 0.1554 3.5813 2.3793 13 6 0.2587 2.7474 1.0667 14 1 -0.5669 2.0650 0.8647 15 6 0.5589 3.7901 -0.0521 16 1 0.4693 3.3324 -1.0373 17 7 -0.3380 4.9428 0.0631 18 6 -1.5480 4.9169 -0.5300 19 8 -1.8945 3.9393 -1.1585 20 6 -2.4708 6.1023 -0.4111 21 16 -4.0063 5.7638 -1.3076 22 6 -4.8722 7.2695 -1.0107 23 1 -4.4131 8.0492 -0.4211 24 6 -6.1447 7.4530 -1.5336 25 7 -6.7045 6.5023 -2.2518 26 14 -7.0624 9.0493 -1.2195 27 1 -6.2811 10.1859 -1.7697 28 1 -8.3905 8.9954 -1.8818 29 1 -7.2450 9.2359 0.2424 30 6 2.0238 4.2097 0.2228 31 1 -0.3634 0.3301 0.9733 32 1 -0.3634 0.6778 -0.7725 33 1 -0.3634 -1.0079 -0.2007 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.6252 1.3265 -2.0925 37 1 5.1234 1.3763 -1.3336 38 1 1.9684 3.6015 3.6082 39 1 1.7235 5.0906 2.6400 40 1 -0.4726 4.4592 2.2277 41 1 -0.2329 2.9690 3.1932 42 1 -0.0610 5.7244 0.5661 43 1 -2.6964 6.2832 0.6399 44 1 -1.9881 6.9825 -0.8357 45 1 -7.5937 6.6307 -2.6175 46 1 2.6608 3.9576 -0.6251 47 1 2.0829 5.2758 0.4420 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108952336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:47 Heat of formation + Delta-G solvation = -70.568004 kcal Electronic energy + Delta-G solvation = -28738.824313 eV Core-core repulsion = 24854.295861 eV Total energy + Delta-G solvation = -3884.528451 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.71723 -40.55917 -39.64436 -36.03997 -35.09381 -34.57090 -34.38205 -31.87735 -31.42257 -30.34592 -29.08314 -27.67307 -27.34381 -23.31469 -23.12925 -22.30804 -21.87310 -20.68058 -20.46384 -19.81164 -18.45683 -18.07084 -17.86002 -17.40567 -16.90767 -16.85987 -16.72794 -16.13406 -15.96583 -15.63494 -15.19942 -14.89454 -14.71495 -14.57989 -14.08213 -14.00560 -13.70868 -13.53444 -13.43512 -13.28599 -13.15644 -12.96057 -12.86787 -12.81022 -12.68685 -12.60652 -12.04627 -11.97566 -11.78420 -11.72753 -11.49063 -11.16105 -11.11972 -10.93411 -10.79104 -10.59041 -10.37085 -10.26109 -9.41564 -8.64153 -8.33738 -6.10936 1.27779 1.44072 1.47357 1.53082 1.57063 1.62378 2.20770 2.28936 2.41638 2.86389 3.00435 3.32649 3.47170 3.54293 3.66303 3.84021 3.94225 3.98396 4.05597 4.12259 4.13718 4.26946 4.32288 4.34449 4.36102 4.48318 4.53085 4.54353 4.66977 4.72776 4.82729 4.86269 5.02746 5.04044 5.13747 5.21990 5.22707 5.25671 5.39469 5.42728 5.45653 5.64673 5.82740 5.93203 6.20528 6.41398 6.49705 7.07882 7.25235 7.30042 8.75025 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022519 B = 0.002504 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.101546 B =11179.641157 C =11597.414632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C 0.040 3.960 4 H 0.080 0.920 5 C 0.523 3.477 6 N -0.836 5.836 7 O -0.566 6.566 8 N -0.473 5.473 9 C 0.043 3.957 10 H 0.125 0.875 11 C -0.107 4.107 12 C -0.115 4.115 13 C 0.030 3.970 14 H 0.111 0.889 15 C 0.118 3.882 16 H 0.076 0.924 17 N -0.698 5.698 18 C 0.537 3.463 19 O -0.559 6.559 20 C -0.131 4.131 21 S -0.146 6.146 22 C -0.547 4.547 23 H 0.082 0.918 24 C 0.014 3.986 25 N -0.911 5.911 26 Si 0.996 3.004 27 H -0.262 1.262 28 H -0.280 1.280 29 H -0.263 1.263 30 C -0.152 4.152 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.415 0.585 37 H 0.410 0.590 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.415 0.585 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.271 0.729 46 H 0.078 0.922 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.364 -6.921 5.498 24.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.136 4.136 3 C -0.072 4.072 4 H 0.098 0.902 5 C 0.307 3.693 6 N -0.401 5.401 7 O -0.445 6.445 8 N -0.197 5.197 9 C -0.065 4.065 10 H 0.143 0.857 11 C -0.145 4.145 12 C -0.153 4.153 13 C -0.079 4.079 14 H 0.129 0.871 15 C 0.011 3.989 16 H 0.094 0.906 17 N -0.352 5.352 18 C 0.323 3.677 19 O -0.436 6.436 20 C -0.282 4.282 21 S 0.081 5.919 22 C -0.695 4.695 23 H 0.100 0.900 24 C -0.191 4.191 25 N -0.547 5.547 26 Si 0.818 3.182 27 H -0.187 1.187 28 H -0.205 1.205 29 H -0.187 1.187 30 C -0.191 4.191 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.246 0.754 37 H 0.242 0.758 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.253 0.747 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 22.987 -9.035 5.542 25.313 hybrid contribution -0.320 2.533 -0.344 2.576 sum 22.667 -6.502 5.198 24.147 Atomic orbital electron populations 1.21867 0.95125 1.02157 1.01615 1.21374 0.96400 0.92798 1.03029 1.22099 0.91528 0.98780 0.94813 0.90231 1.20536 0.90326 0.74703 0.83702 1.43769 1.12030 1.76132 1.08138 1.90694 1.67355 1.50338 1.36075 1.67806 1.01922 1.20625 1.29344 1.24778 0.99329 0.87511 0.94881 0.85703 1.22703 0.93531 1.00519 0.97778 1.22689 0.97462 0.99349 0.95837 1.25095 0.92884 0.94190 0.95720 0.87128 1.22633 0.89471 0.87099 0.99725 0.90606 1.45755 1.15321 1.19792 1.54380 1.20009 0.82196 0.87564 0.77926 1.90685 1.75160 1.35565 1.42221 1.23378 0.98987 1.00068 1.05798 1.85531 1.11724 1.25754 1.68863 1.23179 1.04463 1.02673 1.39187 0.89995 1.26094 0.97451 1.01507 0.94018 1.70175 1.16078 1.34935 1.33546 0.85040 0.77022 0.77199 0.78978 1.18700 1.20471 1.18713 1.23540 0.93191 1.02836 0.99561 0.92770 0.93426 0.91539 0.89517 0.91614 0.75409 0.75770 0.91212 0.89381 0.90653 0.91545 0.74722 0.87329 0.87390 0.92023 0.90386 0.88155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.33 71.98 0.60 -2.30 16 2 C -0.10 -1.65 5.61 30.60 0.17 -1.48 16 3 C 0.04 0.71 1.51 44.17 0.07 0.78 16 4 H 0.08 1.34 5.30 -2.39 -0.01 1.32 16 5 C 0.52 9.06 5.85 87.66 0.51 9.57 16 6 N -0.84 -7.61 8.87 -173.54 -1.54 -9.15 16 7 O -0.57 -14.11 15.04 -3.03 -0.05 -14.15 16 8 N -0.47 -9.66 5.16 -783.48 -4.04 -13.70 16 9 C 0.04 0.78 3.88 46.15 0.18 0.96 16 10 H 0.13 2.63 5.85 -2.38 -0.01 2.62 16 11 C -0.11 -1.77 6.46 32.44 0.21 -1.56 16 12 C -0.12 -2.27 6.35 32.45 0.21 -2.07 16 13 C 0.03 0.67 3.96 46.11 0.18 0.85 16 14 H 0.11 2.88 5.31 -2.39 -0.01 2.86 16 15 C 0.12 2.47 2.26 46.61 0.11 2.58 16 16 H 0.08 1.88 6.41 -2.39 -0.02 1.86 16 17 N -0.70 -15.98 3.65 -434.93 -1.59 -17.56 16 18 C 0.54 18.33 7.85 87.66 0.69 19.02 16 19 O -0.56 -24.01 15.57 -3.02 -0.05 -24.05 16 20 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 21 S -0.15 -7.87 20.57 -56.49 -1.16 -9.03 16 22 C -0.55 -30.68 9.50 67.95 0.65 -30.03 16 23 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 24 C 0.01 0.80 5.49 84.85 0.47 1.26 16 25 N -0.91 -55.30 13.22 21.65 0.29 -55.02 16 26 Si 1.00 43.00 29.55 68.60 2.03 45.03 16 27 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 28 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 29 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 30 C -0.15 -2.39 5.35 32.21 0.17 -2.21 16 31 H 0.05 1.18 6.32 -2.38 -0.02 1.16 16 32 H 0.05 1.04 7.88 -2.39 -0.02 1.02 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.42 1.81 8.83 -92.70 -0.82 0.99 16 37 H 0.41 2.81 8.93 -92.71 -0.83 1.98 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 1.10 7.82 -2.39 -0.02 1.08 16 40 H 0.07 1.47 6.47 -2.39 -0.02 1.46 16 41 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.41 6.90 8.00 -92.71 -0.74 6.16 16 43 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 44 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 45 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 46 H 0.08 1.14 7.31 -2.39 -0.02 1.12 16 47 H 0.10 1.26 7.36 -2.39 -0.02 1.24 16 Total: -1.00 -78.22 376.40 -2.82 -81.03 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: -1.35 Total: 25.74 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 4.64 Total: -9.13 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -6.88 Total: -95.44 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -0.09 Total: -38.21 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: -7.87 SS G_CDS: -1.16 Total: -9.03 kcal Total: -78.22 -2.82 -81.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108952336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.466 kcal (2) G-P(sol) polarization free energy of solvation -78.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds