Wall clock time and date at job start Sat Apr 11 2020 06:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47113 * 2 1 4 4 H 1.09000 * 109.46955 * 55.02280 * 3 2 1 5 5 C 1.50696 * 109.47094 * 175.02570 * 3 2 1 6 6 N 1.34771 * 120.00076 * 278.30555 * 5 3 2 7 7 O 1.21281 * 119.99969 * 98.03317 * 5 3 2 8 8 N 1.46905 * 109.46809 * 295.02570 * 3 2 1 9 9 C 1.50652 * 110.99899 * 85.28435 * 8 3 2 10 10 H 1.09000 * 115.87822 * 296.64579 * 9 8 3 11 11 C 1.55847 * 101.02435 * 170.23473 * 9 8 3 12 12 C 1.54828 * 103.52231 * 327.00555 * 11 9 8 13 13 C 1.50657 * 110.99650 * 193.37271 * 8 3 2 14 14 H 1.09000 * 115.87956 * 64.06380 * 13 8 3 15 15 C 1.55846 * 101.02615 * 298.36873 * 13 8 3 16 16 H 1.09005 * 110.60750 * 208.34089 * 15 13 8 17 17 N 1.46504 * 110.61259 * 85.51914 * 15 13 8 18 18 C 1.34769 * 120.00131 * 161.77946 * 17 15 13 19 19 O 1.21284 * 120.00269 * 0.02562 * 18 17 15 20 20 C 1.50705 * 120.00264 * 179.97438 * 18 17 15 21 21 S 1.80994 * 109.47320 * 180.02562 * 20 18 17 22 22 C 1.76195 * 100.00004 * 180.02562 * 21 20 18 23 23 H 1.08002 * 120.00195 * 0.02562 * 22 21 20 24 24 C 1.38805 * 119.99804 * 180.02562 * 22 21 20 25 25 N 1.31631 * 119.99497 * 180.02562 * 24 22 21 26 26 Si 1.86794 * 120.00256 * 0.02562 * 24 22 21 27 27 H 1.48489 * 109.47499 * 89.99927 * 26 24 22 28 28 H 1.48506 * 109.46924 * 210.00166 * 26 24 22 29 29 H 1.48500 * 109.46950 * 329.99694 * 26 24 22 30 30 C 1.54829 * 103.52194 * 327.00867 * 15 13 8 31 31 H 1.08994 * 109.46915 * 193.42793 * 1 2 3 32 32 H 1.08995 * 109.47038 * 313.42788 * 1 2 3 33 33 H 1.08998 * 109.47129 * 73.42862 * 1 2 3 34 34 H 1.09001 * 109.47252 * 239.99922 * 2 1 3 35 35 H 1.08996 * 109.47433 * 119.99830 * 2 1 3 36 36 H 0.97002 * 119.99818 * 179.72559 * 6 5 3 37 37 H 0.96995 * 120.00336 * 359.73162 * 6 5 3 38 38 H 1.09007 * 110.61237 * 85.51793 * 11 9 8 39 39 H 1.09000 * 110.61331 * 208.33693 * 11 9 8 40 40 H 1.09003 * 110.61384 * 241.49226 * 12 11 9 41 41 H 1.08999 * 110.61353 * 118.51110 * 12 11 9 42 42 H 0.96996 * 119.99884 * 341.77841 * 17 15 13 43 43 H 1.08999 * 109.47102 * 300.00332 * 20 18 17 44 44 H 1.08998 * 109.46489 * 60.00063 * 20 18 17 45 45 H 0.97000 * 120.00262 * 179.97438 * 25 24 22 46 46 H 1.08994 * 110.61605 * 118.50814 * 30 15 13 47 47 H 1.09010 * 110.61187 * 241.33599 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9814 0.8421 5 6 3.5419 1.4443 0.1232 6 7 4.1189 1.3099 1.3337 7 8 4.2315 1.5616 -0.8676 8 7 1.6508 2.0994 -1.2550 9 6 0.2586 2.6668 -1.1582 10 1 -0.5413 1.9417 -1.0086 11 6 0.1876 3.5074 -2.4687 12 6 1.6420 4.0022 -2.6607 13 6 2.3977 3.3946 -1.4406 14 1 3.4786 3.3088 -1.5515 15 6 1.9105 4.2002 -0.1986 16 1 1.9293 5.2705 -0.4040 17 7 2.7315 3.8871 0.9737 18 6 2.7329 4.7161 2.0363 19 8 2.0541 5.7211 2.0223 20 6 3.5770 4.3938 3.2424 21 16 3.3645 5.6871 4.4906 22 6 4.4320 5.0741 5.7512 23 1 4.9710 4.1504 5.6004 24 6 4.5804 5.7784 6.9381 25 7 5.3783 5.3206 7.8796 26 14 3.6477 7.3756 7.1993 27 1 2.3332 7.0845 7.8257 28 1 4.4335 8.2678 8.0891 29 1 3.4351 8.0443 5.8905 30 6 0.4574 3.7063 0.0060 31 1 -0.3633 -0.9995 0.2386 32 1 -0.3633 0.7064 0.7463 33 1 -0.3633 0.2931 -0.9850 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 5.0858 1.3071 1.4125 37 1 3.5675 1.2160 2.1261 38 1 -0.1197 2.8838 -3.3083 39 1 -0.4940 4.3494 -2.3480 40 1 1.6835 5.0911 -2.6343 41 1 2.0558 3.6240 -3.5955 42 1 3.2741 3.0832 0.9851 43 1 3.2669 3.4346 3.6571 44 1 4.6252 4.3407 2.9485 45 1 5.4824 5.8129 8.7089 46 1 0.3479 3.2286 0.9795 47 1 -0.2466 4.5323 -0.0962 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110302163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:59 Heat of formation + Delta-G solvation = -29.183088 kcal Electronic energy + Delta-G solvation = -29554.577854 eV Core-core repulsion = 25671.843987 eV Total energy + Delta-G solvation = -3882.733867 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.18487 -39.33158 -38.88780 -35.20885 -34.53657 -33.60491 -32.50101 -30.92356 -30.30742 -29.75353 -27.88543 -26.88219 -25.66860 -22.80465 -22.50848 -21.36158 -20.62339 -20.01053 -19.72649 -18.02739 -17.80795 -17.34830 -16.66408 -16.51155 -16.35618 -15.14115 -15.12088 -15.02206 -14.92407 -14.61348 -14.36322 -14.18640 -13.71845 -13.26735 -13.08666 -13.07290 -12.85403 -12.71311 -12.65300 -12.37058 -12.15463 -11.89751 -11.58892 -11.40592 -11.33498 -11.30359 -11.12865 -11.06210 -10.78568 -10.73542 -10.50955 -10.10785 -9.97516 -9.90420 -9.57178 -9.09999 -9.04461 -8.89092 -8.57494 -6.99236 -6.35164 -4.07536 2.12181 2.68519 2.85155 2.94859 3.25124 3.28972 3.45705 3.49754 3.58957 4.25350 4.27336 4.29917 4.36812 4.51886 4.61010 4.67617 4.73927 4.78853 4.90625 4.96698 5.04040 5.05020 5.09770 5.13697 5.16640 5.26148 5.38026 5.41197 5.51547 5.60951 5.61343 5.74440 5.76097 5.82285 5.84548 5.85955 5.94219 5.97274 5.99035 6.28314 6.38672 6.46670 6.58174 6.92532 7.45679 7.85777 7.87656 8.34136 8.38323 9.11007 10.73968 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016884 B = 0.003265 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.995685 B = 8573.761849 C = 9229.214394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.105 4.105 3 C 0.030 3.970 4 H 0.088 0.912 5 C 0.510 3.490 6 N -0.855 5.855 7 O -0.518 6.518 8 N -0.466 5.466 9 C 0.036 3.964 10 H 0.128 0.872 11 C -0.113 4.113 12 C -0.110 4.110 13 C 0.034 3.966 14 H 0.135 0.865 15 C 0.109 3.891 16 H 0.098 0.902 17 N -0.740 5.740 18 C 0.527 3.473 19 O -0.513 6.513 20 C -0.125 4.125 21 S -0.137 6.137 22 C -0.524 4.524 23 H 0.088 0.912 24 C 0.097 3.903 25 N -0.879 5.879 26 Si 0.856 3.144 27 H -0.267 1.267 28 H -0.273 1.273 29 H -0.235 1.235 30 C -0.164 4.164 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.409 0.591 37 H 0.406 0.594 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.390 0.610 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.271 0.729 46 H 0.074 0.926 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.061 -10.862 -19.324 24.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C -0.083 4.083 4 H 0.105 0.895 5 C 0.295 3.705 6 N -0.422 5.422 7 O -0.393 6.393 8 N -0.189 5.189 9 C -0.072 4.072 10 H 0.145 0.855 11 C -0.151 4.151 12 C -0.149 4.149 13 C -0.074 4.074 14 H 0.152 0.848 15 C 0.002 3.998 16 H 0.116 0.884 17 N -0.403 5.403 18 C 0.313 3.687 19 O -0.387 6.387 20 C -0.276 4.276 21 S 0.090 5.910 22 C -0.671 4.671 23 H 0.106 0.894 24 C -0.112 4.112 25 N -0.516 5.516 26 Si 0.681 3.319 27 H -0.192 1.192 28 H -0.199 1.199 29 H -0.159 1.159 30 C -0.204 4.204 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.241 0.759 37 H 0.235 0.765 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.234 0.766 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.694 -9.563 -20.372 24.917 hybrid contribution 0.954 -0.383 1.811 2.082 sum -9.739 -9.946 -18.562 23.202 Atomic orbital electron populations 1.21975 0.94893 1.02012 1.02354 1.21418 0.96881 0.92982 1.03036 1.22331 0.91438 0.98791 0.95698 0.89483 1.20576 0.91019 0.75625 0.83286 1.44218 1.12407 1.76335 1.09276 1.90747 1.64830 1.47449 1.36255 1.67733 1.03024 1.19635 1.28506 1.25211 0.92302 0.94737 0.94949 0.85497 1.22588 0.96814 0.98978 0.96757 1.22516 0.94871 0.99941 0.97543 1.25078 1.00721 0.87632 0.94003 0.84773 1.22809 0.90057 1.01542 0.85407 0.88418 1.46859 1.48831 1.27757 1.16825 1.20366 0.81877 0.82892 0.83561 1.90696 1.41409 1.25754 1.80846 1.23292 1.02204 1.05115 0.96946 1.84832 1.62275 1.30523 1.13413 1.22303 1.30417 1.12931 1.01457 0.89401 1.24702 0.94288 0.97658 0.94559 1.69932 1.35874 1.39242 1.06504 0.86745 0.80463 0.83737 0.80982 1.19176 1.19866 1.15941 1.24019 0.96942 0.99864 0.99572 0.92268 0.92556 0.91424 0.90303 0.91221 0.75888 0.76486 0.90827 0.90909 0.90884 0.90387 0.76641 0.88905 0.88612 0.91879 0.90704 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 8.32 37.16 0.31 -0.71 16 2 C -0.10 -0.82 5.59 -26.73 -0.15 -0.97 16 3 C 0.03 0.29 1.40 -68.86 -0.10 0.19 16 4 H 0.09 0.85 4.29 -51.93 -0.22 0.63 16 5 C 0.51 5.52 4.32 -10.99 -0.05 5.47 16 6 N -0.85 -7.05 7.63 31.22 0.24 -6.81 16 7 O -0.52 -7.32 15.05 5.56 0.08 -7.24 16 8 N -0.47 -4.65 5.18 -198.22 -1.03 -5.67 16 9 C 0.04 0.30 4.11 -61.72 -0.25 0.05 16 10 H 0.13 0.89 5.03 -51.93 -0.26 0.63 16 11 C -0.11 -0.87 6.46 -24.25 -0.16 -1.03 16 12 C -0.11 -0.99 6.45 -24.25 -0.16 -1.14 16 13 C 0.03 0.38 3.72 -62.56 -0.23 0.15 16 14 H 0.13 1.77 5.96 -51.93 -0.31 1.46 16 15 C 0.11 1.33 2.51 -65.44 -0.16 1.17 16 16 H 0.10 1.35 7.47 -51.93 -0.39 0.96 16 17 N -0.74 -10.03 3.95 -51.40 -0.20 -10.23 16 18 C 0.53 9.29 7.83 -10.99 -0.09 9.20 16 19 O -0.51 -10.84 15.62 5.55 0.09 -10.76 16 20 C -0.12 -2.33 6.16 36.01 0.22 -2.11 16 21 S -0.14 -3.37 18.55 -107.50 -1.99 -5.37 16 22 C -0.52 -14.65 10.04 30.94 0.31 -14.34 16 23 H 0.09 2.54 8.03 -52.49 -0.42 2.12 16 24 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 25 N -0.88 -25.98 13.97 55.49 0.78 -25.21 16 26 Si 0.86 21.40 27.74 -169.99 -4.72 16.68 16 27 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 28 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 29 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 30 C -0.16 -1.72 5.52 -23.41 -0.13 -1.85 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.37 7.85 -51.93 -0.41 -0.04 16 33 H 0.07 0.44 6.14 -51.93 -0.32 0.12 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.41 3.10 8.93 -40.82 -0.36 2.73 16 37 H 0.41 2.67 8.83 -40.82 -0.36 2.31 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.51 7.90 -51.93 -0.41 0.09 16 40 H 0.07 0.62 7.86 -51.93 -0.41 0.21 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.39 4.66 2.99 -40.82 -0.12 4.54 16 43 H 0.09 1.53 8.14 -51.92 -0.42 1.10 16 44 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.07 0.85 6.71 -51.93 -0.35 0.50 16 47 H 0.08 0.87 7.90 -51.92 -0.41 0.46 16 LS Contribution 367.76 15.07 5.54 5.54 Total: -1.00 -34.60 367.76 -8.81 -43.41 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.87 Total: 8.90 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -0.73 Total: -3.24 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: -0.22 Total: -47.93 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.17 Total: -18.00 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.72 Total: 16.68 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -1.99 Total: -5.37 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.60 -8.81 -43.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110302163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.226 kcal (2) G-P(sol) polarization free energy of solvation -34.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds