Wall clock time and date at job start Sat Apr 11 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47113 * 2 1 4 4 H 1.09000 * 109.46955 * 55.02280 * 3 2 1 5 5 C 1.50696 * 109.47094 * 175.02570 * 3 2 1 6 6 N 1.34771 * 120.00076 * 278.30555 * 5 3 2 7 7 O 1.21281 * 119.99969 * 98.03317 * 5 3 2 8 8 N 1.46905 * 109.46809 * 295.02570 * 3 2 1 9 9 C 1.50652 * 110.99899 * 85.28435 * 8 3 2 10 10 H 1.09000 * 115.87822 * 296.64579 * 9 8 3 11 11 C 1.55847 * 101.02435 * 170.23473 * 9 8 3 12 12 C 1.54828 * 103.52231 * 327.00555 * 11 9 8 13 13 C 1.50657 * 110.99650 * 193.37271 * 8 3 2 14 14 H 1.09000 * 115.87956 * 64.06380 * 13 8 3 15 15 C 1.55846 * 101.02615 * 298.36873 * 13 8 3 16 16 H 1.09005 * 110.60750 * 208.34089 * 15 13 8 17 17 N 1.46504 * 110.61259 * 85.51914 * 15 13 8 18 18 C 1.34769 * 120.00131 * 161.77946 * 17 15 13 19 19 O 1.21284 * 120.00269 * 0.02562 * 18 17 15 20 20 C 1.50705 * 120.00264 * 179.97438 * 18 17 15 21 21 S 1.80994 * 109.47320 * 180.02562 * 20 18 17 22 22 C 1.76195 * 100.00004 * 180.02562 * 21 20 18 23 23 H 1.08002 * 120.00195 * 0.02562 * 22 21 20 24 24 C 1.38805 * 119.99804 * 180.02562 * 22 21 20 25 25 N 1.31631 * 119.99497 * 180.02562 * 24 22 21 26 26 Si 1.86794 * 120.00256 * 0.02562 * 24 22 21 27 27 H 1.48489 * 109.47499 * 89.99927 * 26 24 22 28 28 H 1.48506 * 109.46924 * 210.00166 * 26 24 22 29 29 H 1.48500 * 109.46950 * 329.99694 * 26 24 22 30 30 C 1.54829 * 103.52194 * 327.00867 * 15 13 8 31 31 H 1.08994 * 109.46915 * 193.42793 * 1 2 3 32 32 H 1.08995 * 109.47038 * 313.42788 * 1 2 3 33 33 H 1.08998 * 109.47129 * 73.42862 * 1 2 3 34 34 H 1.09001 * 109.47252 * 239.99922 * 2 1 3 35 35 H 1.08996 * 109.47433 * 119.99830 * 2 1 3 36 36 H 0.97002 * 119.99818 * 179.72559 * 6 5 3 37 37 H 0.96995 * 120.00336 * 359.73162 * 6 5 3 38 38 H 1.09007 * 110.61237 * 85.51793 * 11 9 8 39 39 H 1.09000 * 110.61331 * 208.33693 * 11 9 8 40 40 H 1.09003 * 110.61384 * 241.49226 * 12 11 9 41 41 H 1.08999 * 110.61353 * 118.51110 * 12 11 9 42 42 H 0.96996 * 119.99884 * 341.77841 * 17 15 13 43 43 H 1.08999 * 109.47102 * 300.00332 * 20 18 17 44 44 H 1.08998 * 109.46489 * 60.00063 * 20 18 17 45 45 H 0.97000 * 120.00262 * 179.97438 * 25 24 22 46 46 H 1.08994 * 110.61605 * 118.50814 * 30 15 13 47 47 H 1.09010 * 110.61187 * 241.33599 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9814 0.8421 5 6 3.5419 1.4443 0.1232 6 7 4.1189 1.3099 1.3337 7 8 4.2315 1.5616 -0.8676 8 7 1.6508 2.0994 -1.2550 9 6 0.2586 2.6668 -1.1582 10 1 -0.5413 1.9417 -1.0086 11 6 0.1876 3.5074 -2.4687 12 6 1.6420 4.0022 -2.6607 13 6 2.3977 3.3946 -1.4406 14 1 3.4786 3.3088 -1.5515 15 6 1.9105 4.2002 -0.1986 16 1 1.9293 5.2705 -0.4040 17 7 2.7315 3.8871 0.9737 18 6 2.7329 4.7161 2.0363 19 8 2.0541 5.7211 2.0223 20 6 3.5770 4.3938 3.2424 21 16 3.3645 5.6871 4.4906 22 6 4.4320 5.0741 5.7512 23 1 4.9710 4.1504 5.6004 24 6 4.5804 5.7784 6.9381 25 7 5.3783 5.3206 7.8796 26 14 3.6477 7.3756 7.1993 27 1 2.3332 7.0845 7.8257 28 1 4.4335 8.2678 8.0891 29 1 3.4351 8.0443 5.8905 30 6 0.4574 3.7063 0.0060 31 1 -0.3633 -0.9995 0.2386 32 1 -0.3633 0.7064 0.7463 33 1 -0.3633 0.2931 -0.9850 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 5.0858 1.3071 1.4125 37 1 3.5675 1.2160 2.1261 38 1 -0.1197 2.8838 -3.3083 39 1 -0.4940 4.3494 -2.3480 40 1 1.6835 5.0911 -2.6343 41 1 2.0558 3.6240 -3.5955 42 1 3.2741 3.0832 0.9851 43 1 3.2669 3.4346 3.6571 44 1 4.6252 4.3407 2.9485 45 1 5.4824 5.8129 8.7089 46 1 0.3479 3.2286 0.9795 47 1 -0.2466 4.5323 -0.0962 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110302163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:58 Heat of formation + Delta-G solvation = -56.416984 kcal Electronic energy + Delta-G solvation = -29555.758804 eV Core-core repulsion = 25671.843987 eV Total energy + Delta-G solvation = -3883.914817 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.06212 -40.39479 -40.06188 -35.94530 -35.68248 -34.68226 -34.47584 -31.82558 -31.36823 -30.63737 -28.96008 -27.85152 -27.60680 -23.61680 -23.34931 -22.17049 -21.74932 -20.91413 -20.55974 -19.87966 -18.59687 -18.41943 -17.81711 -17.68691 -17.22712 -17.10812 -16.47723 -16.05456 -16.02194 -15.72948 -15.38106 -15.08494 -14.98991 -14.84800 -14.35304 -13.97261 -13.86027 -13.71182 -13.46316 -13.36829 -13.11914 -13.04834 -13.01045 -12.78951 -12.70803 -12.40057 -12.13776 -11.94725 -11.93400 -11.85946 -11.42675 -11.37762 -11.18280 -10.97724 -10.95759 -10.79798 -10.55771 -10.28112 -9.69581 -9.02248 -8.52740 -6.23775 0.93202 1.25529 1.30032 1.42854 1.45507 1.53466 2.09180 2.21034 2.24245 2.68034 2.72774 2.85919 3.43483 3.53670 3.58174 3.72260 3.76286 3.88906 3.98756 4.03990 4.10963 4.15203 4.28201 4.33938 4.36588 4.40363 4.44136 4.50514 4.63901 4.69144 4.84420 4.92541 5.02455 5.07744 5.10672 5.20628 5.24825 5.25743 5.35623 5.42353 5.57465 5.64853 5.69648 5.80567 6.10558 6.18368 6.21223 6.92714 7.00995 7.07667 8.59375 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016884 B = 0.003265 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.995685 B = 8573.761849 C = 9229.214394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.102 4.102 3 C 0.030 3.970 4 H 0.087 0.913 5 C 0.505 3.495 6 N -0.843 5.843 7 O -0.555 6.555 8 N -0.468 5.468 9 C 0.046 3.954 10 H 0.149 0.851 11 C -0.109 4.109 12 C -0.109 4.109 13 C 0.033 3.967 14 H 0.113 0.887 15 C 0.103 3.897 16 H 0.081 0.919 17 N -0.720 5.720 18 C 0.532 3.468 19 O -0.551 6.551 20 C -0.113 4.113 21 S -0.168 6.168 22 C -0.529 4.529 23 H 0.066 0.934 24 C 0.048 3.952 25 N -0.915 5.915 26 Si 0.911 3.089 27 H -0.261 1.261 28 H -0.261 1.261 29 H -0.238 1.238 30 C -0.161 4.161 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.413 0.587 37 H 0.416 0.584 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.399 0.601 43 H 0.119 0.881 44 H 0.107 0.893 45 H 0.277 0.723 46 H 0.069 0.931 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.818 -11.585 -20.339 26.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.141 4.141 3 C -0.083 4.083 4 H 0.104 0.896 5 C 0.291 3.709 6 N -0.411 5.411 7 O -0.432 6.432 8 N -0.192 5.192 9 C -0.062 4.062 10 H 0.166 0.834 11 C -0.147 4.147 12 C -0.148 4.148 13 C -0.076 4.076 14 H 0.131 0.869 15 C -0.004 4.004 16 H 0.099 0.901 17 N -0.383 5.383 18 C 0.317 3.683 19 O -0.428 6.428 20 C -0.264 4.264 21 S 0.058 5.942 22 C -0.676 4.676 23 H 0.084 0.916 24 C -0.157 4.157 25 N -0.553 5.553 26 Si 0.733 3.267 27 H -0.185 1.185 28 H -0.185 1.185 29 H -0.163 1.163 30 C -0.200 4.200 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.246 0.754 37 H 0.247 0.753 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.244 0.756 43 H 0.137 0.863 44 H 0.126 0.874 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.446 -10.329 -21.384 26.812 hybrid contribution 1.562 -0.289 2.031 2.579 sum -10.885 -10.619 -19.353 24.612 Atomic orbital electron populations 1.21961 0.93643 1.02821 1.02564 1.21439 0.97923 0.91533 1.03181 1.22410 0.90436 0.99962 0.95481 0.89558 1.20897 0.91614 0.75097 0.83308 1.44178 1.12914 1.75005 1.09049 1.90739 1.65645 1.49299 1.37525 1.67764 1.03665 1.18927 1.28827 1.25343 0.91949 0.94498 0.94361 0.83409 1.22622 0.95945 0.99439 0.96719 1.22540 0.95581 1.00076 0.96570 1.24970 0.99968 0.88316 0.94322 0.86938 1.22999 0.91267 1.00965 0.85130 0.90088 1.46743 1.48361 1.27062 1.16098 1.20125 0.81341 0.82811 0.83974 1.90686 1.43140 1.27428 1.81576 1.23286 1.03410 1.03947 0.95774 1.84770 1.61443 1.33577 1.14411 1.22453 1.30449 1.12144 1.02572 0.91579 1.25505 0.95118 1.00618 0.94483 1.70006 1.37280 1.40794 1.07220 0.85920 0.79603 0.80346 0.80854 1.18530 1.18501 1.16250 1.23979 0.95337 1.00498 1.00228 0.91164 0.92362 0.91188 0.91308 0.89984 0.75396 0.75315 0.89473 0.89780 0.90630 0.90077 0.75624 0.86286 0.87445 0.91370 0.91250 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.32 71.98 0.60 -0.97 16 2 C -0.10 -1.38 5.59 30.60 0.17 -1.21 16 3 C 0.03 0.52 1.40 44.17 0.06 0.58 16 4 H 0.09 1.52 4.29 -2.39 -0.01 1.51 16 5 C 0.51 10.46 4.32 87.66 0.38 10.84 16 6 N -0.84 -12.86 7.63 -173.54 -1.32 -14.18 16 7 O -0.55 -15.56 15.05 -3.03 -0.05 -15.60 16 8 N -0.47 -8.58 5.18 -781.03 -4.05 -12.63 16 9 C 0.05 0.66 4.11 46.69 0.19 0.85 16 10 H 0.15 1.56 5.03 -2.39 -0.01 1.54 16 11 C -0.11 -1.40 6.46 32.20 0.21 -1.19 16 12 C -0.11 -1.80 6.45 32.20 0.21 -1.59 16 13 C 0.03 0.71 3.72 46.14 0.17 0.89 16 14 H 0.11 2.98 5.96 -2.39 -0.01 2.97 16 15 C 0.10 2.44 2.51 46.60 0.12 2.56 16 16 H 0.08 2.23 7.47 -2.38 -0.02 2.21 16 17 N -0.72 -18.88 3.95 -434.94 -1.72 -20.60 16 18 C 0.53 18.29 7.83 87.66 0.69 18.98 16 19 O -0.55 -23.09 15.62 -3.04 -0.05 -23.14 16 20 C -0.11 -4.11 6.16 71.24 0.44 -3.67 16 21 S -0.17 -8.24 18.55 -56.49 -1.05 -9.29 16 22 C -0.53 -29.71 10.04 67.96 0.68 -29.03 16 23 H 0.07 3.88 8.03 -2.91 -0.02 3.85 16 24 C 0.05 2.77 5.50 84.86 0.47 3.24 16 25 N -0.92 -54.42 13.97 21.65 0.30 -54.11 16 26 Si 0.91 44.00 27.74 68.60 1.90 45.90 16 27 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 28 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 29 H -0.24 -11.56 6.74 99.48 0.67 -10.89 16 30 C -0.16 -3.10 5.52 32.75 0.18 -2.92 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.59 7.85 -2.39 -0.02 0.57 16 33 H 0.07 0.69 6.14 -2.39 -0.01 0.67 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.41 5.83 8.93 -92.71 -0.83 5.01 16 37 H 0.42 4.71 8.83 -92.71 -0.82 3.90 16 38 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.08 0.92 7.90 -2.39 -0.02 0.90 16 40 H 0.08 1.20 7.86 -2.39 -0.02 1.18 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.40 9.09 2.99 -92.71 -0.28 8.81 16 43 H 0.12 3.69 8.14 -2.40 -0.02 3.67 16 44 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 45 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 46 H 0.07 1.43 6.71 -2.39 -0.02 1.42 16 47 H 0.08 1.63 7.90 -2.38 -0.02 1.61 16 Total: -1.00 -74.85 367.76 -2.40 -77.25 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: -0.93 Total: 29.07 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 4.56 Total: -2.66 kcal Atomic # 7 Polarization: -94.73 SS G_CDS: -6.79 Total: -101.52 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -0.09 Total: -38.75 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.90 Total: 45.90 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.05 Total: -9.29 kcal Total: -74.85 -2.40 -77.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110302163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.829 kcal (2) G-P(sol) polarization free energy of solvation -74.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds