Wall clock time and date at job start Sat Apr 11 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47302 * 2 1 4 4 C 1.53002 * 109.47095 * 239.99863 * 2 1 3 5 5 C 1.50701 * 109.47336 * 119.99830 * 2 1 3 6 6 C 1.34333 * 126.44054 * 59.99776 * 5 2 1 7 7 N 1.34485 * 107.66506 * 180.02562 * 6 5 2 8 8 C 1.30255 * 108.70198 * 0.02562 * 7 6 5 9 9 C 1.50697 * 125.61717 * 179.97438 * 8 7 6 10 10 N 1.46905 * 109.47066 * 90.02462 * 9 8 7 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46916 * 180.02562 * 11 10 9 13 13 N 1.46502 * 109.46871 * 179.97438 * 12 11 10 14 14 C 1.34771 * 119.99820 * 179.97438 * 13 12 11 15 15 O 1.21288 * 120.00364 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99955 * 179.97438 * 14 13 12 17 17 S 1.81007 * 109.47197 * 180.02562 * 16 14 13 18 18 C 1.76204 * 99.99850 * 180.02562 * 17 16 14 19 19 H 1.07987 * 120.00234 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99570 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99636 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00004 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47452 * 89.99830 * 22 20 18 24 24 H 1.48508 * 109.46918 * 209.99576 * 22 20 18 25 25 H 1.48498 * 109.47393 * 329.99523 * 22 20 18 26 26 O 1.33970 * 108.75997 * 0.22624 * 8 7 6 27 27 H 1.09003 * 109.46629 * 299.99876 * 1 2 3 28 28 H 1.08993 * 109.47181 * 60.00177 * 1 2 3 29 29 H 1.08994 * 109.47083 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47341 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.46656 * 299.99868 * 3 2 1 32 32 H 1.09002 * 109.47540 * 59.99574 * 3 2 1 33 33 H 1.08994 * 109.46913 * 299.99807 * 4 2 1 34 34 H 1.08993 * 109.47139 * 59.99934 * 4 2 1 35 35 H 1.08999 * 109.47043 * 179.97438 * 4 2 1 36 36 H 1.07990 * 126.16587 * 359.97438 * 6 5 2 37 37 H 1.09001 * 109.47558 * 330.02625 * 9 8 7 38 38 H 1.08998 * 109.47216 * 210.02287 * 9 8 7 39 39 H 1.00901 * 110.99869 * 56.04737 * 10 9 8 40 40 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 41 41 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 42 42 H 1.08995 * 109.46615 * 299.99641 * 12 11 10 43 43 H 1.08996 * 109.46939 * 60.00272 * 12 11 10 44 44 H 0.97000 * 119.99841 * 0.02562 * 13 12 11 45 45 H 1.08993 * 109.47735 * 300.00304 * 16 14 13 46 46 H 1.09006 * 109.46731 * 60.00820 * 16 14 13 47 47 H 0.97005 * 119.99839 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.7889 -1.9871 1.5701 7 7 2.4170 -2.2264 2.7349 8 6 3.0298 -1.1399 3.1100 9 6 3.8511 -0.9837 4.3637 10 7 5.2497 -1.3319 4.0795 11 6 6.0819 -1.1916 5.2818 12 6 7.5283 -1.5615 4.9469 13 7 8.3584 -1.4210 6.1458 14 6 9.6766 -1.6956 6.0887 15 8 10.1758 -2.0587 5.0446 16 6 10.5306 -1.5506 7.3218 17 16 12.2417 -1.9882 6.9257 18 6 12.9938 -1.7374 8.4993 19 1 12.3971 -1.4071 9.3365 20 6 14.3534 -1.9644 8.6627 21 7 14.9153 -1.7766 9.8380 22 14 15.3857 -2.5351 7.2142 23 1 15.9225 -1.3534 6.4927 24 1 16.5123 -3.3679 7.7069 25 1 14.5433 -3.3378 6.2916 26 8 2.8049 -0.1825 2.2002 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7209 -1.2495 36 1 1.1952 -2.6935 1.0093 37 1 3.4621 -1.6453 5.1377 38 1 3.7965 0.0492 4.7076 39 1 5.6137 -0.7757 3.3204 40 1 6.0429 -0.1603 5.6324 41 1 5.7082 -1.8550 6.0618 42 1 7.5677 -2.5927 4.5960 43 1 7.9017 -0.8977 4.1671 44 1 7.9591 -1.1310 6.9809 45 1 10.4916 -0.5191 7.6717 46 1 10.1572 -2.2135 8.1024 47 1 15.8655 -1.9349 9.9521 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123799612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:02 Heat of formation + Delta-G solvation = -55.466640 kcal Electronic energy + Delta-G solvation = -25570.143893 eV Core-core repulsion = 21686.270286 eV Total energy + Delta-G solvation = -3883.873607 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.40608 -40.66532 -38.24701 -37.71771 -35.84919 -35.49224 -34.66640 -32.22799 -30.86241 -28.92612 -28.26256 -28.22646 -27.83385 -26.12916 -23.78219 -23.24072 -22.44635 -21.81604 -20.64873 -19.90002 -18.18880 -17.91411 -17.76916 -17.34410 -17.19846 -17.01303 -16.52564 -16.23617 -15.88055 -15.56461 -15.23440 -14.97940 -14.96063 -14.83541 -14.58190 -14.39209 -14.26317 -13.71690 -13.61292 -13.33976 -13.24209 -13.15574 -13.01460 -12.78457 -12.66089 -12.60547 -12.56480 -12.44961 -12.32969 -12.04746 -11.93736 -11.86365 -11.42128 -11.16637 -11.05913 -10.52577 -10.16408 -9.79345 -9.55977 -8.99116 -8.51139 -6.21826 0.37549 0.99347 1.31671 1.46319 1.51797 1.56416 1.58737 1.64895 2.17967 2.25996 2.71155 2.87379 2.96129 3.31573 3.55097 3.77663 3.81072 3.90043 3.94650 4.00311 4.07781 4.14963 4.25600 4.29152 4.43467 4.48749 4.51093 4.61278 4.69729 4.74451 4.79625 4.82078 4.89449 4.91121 4.92633 4.98199 5.04877 5.22793 5.28018 5.32147 5.34543 5.35741 5.71308 5.72146 6.12078 6.12439 6.46762 6.72876 6.94395 7.19800 8.61191 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030836 B = 0.001388 C = 0.001363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.817606 B =20165.007956 C =20545.181275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.017 3.983 3 C -0.144 4.144 4 C -0.140 4.140 5 C -0.028 4.028 6 C -0.058 4.058 7 N -0.492 5.492 8 C 0.176 3.824 9 C 0.165 3.835 10 N -0.694 5.694 11 C 0.064 3.936 12 C 0.124 3.876 13 N -0.709 5.709 14 C 0.535 3.465 15 O -0.565 6.565 16 C -0.110 4.110 17 S -0.180 6.180 18 C -0.529 4.529 19 H 0.064 0.936 20 C 0.047 3.953 21 N -0.917 5.917 22 Si 0.913 3.087 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.238 1.238 26 O -0.206 6.206 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.197 0.803 37 H 0.123 0.877 38 H 0.085 0.915 39 H 0.349 0.651 40 H 0.066 0.934 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.420 0.580 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.043 6.917 -18.971 40.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.017 3.983 3 C -0.201 4.201 4 C -0.197 4.197 5 C -0.082 4.082 6 C -0.196 4.196 7 N -0.222 5.222 8 C -0.032 4.032 9 C 0.036 3.964 10 N -0.328 5.328 11 C -0.065 4.065 12 C 0.000 4.000 13 N -0.363 5.363 14 C 0.320 3.680 15 O -0.443 6.443 16 C -0.261 4.261 17 S 0.047 5.953 18 C -0.676 4.676 19 H 0.082 0.918 20 C -0.158 4.158 21 N -0.555 5.555 22 Si 0.735 3.265 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.162 1.162 26 O -0.093 6.093 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.214 0.786 37 H 0.141 0.859 38 H 0.103 0.897 39 H 0.167 0.833 40 H 0.084 0.916 41 H 0.116 0.884 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.257 0.743 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -34.169 5.134 -20.128 39.988 hybrid contribution 0.257 1.691 1.234 2.109 sum -33.912 6.825 -18.894 39.415 Atomic orbital electron populations 1.21940 0.90924 1.03322 1.03318 1.19333 0.96759 0.95131 0.87102 1.21877 1.01068 0.93966 1.03190 1.21949 1.01050 1.00990 0.95690 1.23986 0.96870 0.94633 0.92686 1.23353 1.04917 0.96336 0.95019 1.70426 1.11382 1.27056 1.13352 1.26455 1.00437 0.81717 0.94544 1.20292 0.85592 1.03054 0.87452 1.60188 1.01060 1.62306 1.09196 1.21995 0.89909 1.02017 0.92563 1.21177 0.89939 1.01804 0.87095 1.45540 1.06808 1.69312 1.14683 1.19973 0.82958 0.76235 0.88833 1.90704 1.73632 1.47209 1.32766 1.23267 0.96072 1.07156 0.99625 1.84765 1.04095 1.89508 1.16954 1.22464 0.97434 1.52313 0.95417 0.91810 1.25536 0.98077 0.93867 0.98351 1.70013 1.13015 1.48142 1.24295 0.85883 0.80019 0.80330 0.80241 1.18701 1.18341 1.16188 1.84382 1.54564 1.41560 1.28804 0.92827 0.89269 0.91406 0.93109 0.89639 0.92747 0.91440 0.89217 0.93236 0.78624 0.85882 0.89699 0.83261 0.91584 0.88362 0.92326 0.92298 0.74296 0.86545 0.86594 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.35 71.98 0.60 -0.21 16 2 C 0.02 0.16 0.93 -52.93 -0.05 0.11 16 3 C -0.14 -1.26 8.06 71.98 0.58 -0.68 16 4 C -0.14 -1.01 8.35 71.98 0.60 -0.40 16 5 C -0.03 -0.43 5.70 24.79 0.14 -0.29 16 6 C -0.06 -1.00 11.24 83.39 0.94 -0.06 16 7 N -0.49 -10.66 11.29 -303.83 -3.43 -14.09 16 8 C 0.18 3.19 7.85 88.34 0.69 3.88 16 9 C 0.17 1.98 6.31 85.55 0.54 2.52 16 10 N -0.69 -9.62 6.49 -517.92 -3.36 -12.99 16 11 C 0.06 0.73 5.80 86.30 0.50 1.23 16 12 C 0.12 2.42 5.93 86.38 0.51 2.93 16 13 N -0.71 -15.35 5.56 -463.06 -2.57 -17.92 16 14 C 0.53 17.94 7.85 87.66 0.69 18.62 16 15 O -0.56 -24.24 15.86 -3.05 -0.05 -24.29 16 16 C -0.11 -4.04 6.16 71.24 0.44 -3.60 16 17 S -0.18 -9.06 18.55 -56.49 -1.05 -10.11 16 18 C -0.53 -30.67 10.04 67.95 0.68 -29.98 16 19 H 0.06 3.88 8.03 -2.92 -0.02 3.86 16 20 C 0.05 2.76 5.50 84.86 0.47 3.23 16 21 N -0.92 -55.72 13.97 21.65 0.30 -55.41 16 22 Si 0.91 45.10 27.74 68.60 1.90 47.00 16 23 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.24 -11.78 6.74 99.48 0.67 -11.11 16 26 O -0.21 -3.69 10.24 -3.73 -0.04 -3.73 16 27 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.07 0.35 8.02 -2.39 -0.02 0.33 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.44 8.02 -2.39 -0.02 0.42 16 34 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.20 2.39 8.06 -2.92 -0.02 2.37 16 37 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.35 4.82 8.72 -89.69 -0.78 4.04 16 40 H 0.07 0.50 8.14 -2.39 -0.02 0.49 16 41 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.42 5.90 8.47 -92.71 -0.79 5.12 16 45 H 0.12 3.84 8.14 -2.40 -0.02 3.82 16 46 H 0.12 3.86 8.14 -2.39 -0.02 3.84 16 47 H 0.28 15.56 8.31 -92.70 -0.77 14.79 16 Total: -1.00 -79.65 408.48 -1.59 -81.25 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -0.63 Total: 13.00 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 7.33 Total: -2.71 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -9.06 Total: -100.41 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.09 Total: -28.02 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.05 Total: -10.11 kcal Total: -79.65 -1.59 -81.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.780 kcal (2) G-P(sol) polarization free energy of solvation -79.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds