Wall clock time and date at job start Sat Apr 11 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30260 * 125.61840 * 2 1 4 4 C 1.34476 * 108.69900 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.16590 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.46921 * 275.02284 * 5 4 3 7 7 C 1.46906 * 110.99793 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47279 * 325.00167 * 7 6 5 9 9 C 1.52995 * 109.46946 * 85.00144 * 7 6 5 10 10 C 1.53000 * 109.47281 * 205.00148 * 7 6 5 11 11 C 1.53001 * 109.46786 * 64.99922 * 10 7 6 12 12 H 1.08997 * 109.47588 * 305.00028 * 11 10 7 13 13 C 1.53007 * 109.46990 * 185.00225 * 11 10 7 14 14 N 1.46499 * 109.47197 * 65.00336 * 11 10 7 15 15 C 1.34773 * 119.99796 * 204.99376 * 14 11 10 16 16 O 1.21277 * 120.00565 * 0.02562 * 15 14 11 17 17 C 1.50710 * 119.99718 * 179.97438 * 15 14 11 18 18 S 1.80997 * 109.46887 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99796 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99867 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99931 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00218 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99844 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46662 * 89.99983 * 23 21 19 25 25 H 1.48492 * 109.46899 * 210.00070 * 23 21 19 26 26 H 1.48499 * 109.46947 * 330.00026 * 23 21 19 27 27 C 1.34335 * 107.67225 * 0.26304 * 4 3 2 28 28 O 1.33970 * 125.62162 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46887 * 90.00159 * 1 2 3 30 30 H 1.08999 * 109.47365 * 209.99821 * 1 2 3 31 31 H 1.08999 * 109.46796 * 330.00248 * 1 2 3 32 32 H 1.09002 * 109.47060 * 35.02465 * 5 4 3 33 33 H 1.09001 * 109.47380 * 155.02553 * 5 4 3 34 34 H 1.00899 * 111.00283 * 303.95218 * 6 5 4 35 35 H 1.09000 * 109.47395 * 299.99746 * 9 7 6 36 36 H 1.09003 * 109.47112 * 59.99921 * 9 7 6 37 37 H 1.09001 * 109.47056 * 179.97438 * 9 7 6 38 38 H 1.08996 * 109.47600 * 185.00056 * 10 7 6 39 39 H 1.09003 * 109.47172 * 305.00516 * 10 7 6 40 40 H 1.08997 * 109.46794 * 300.00289 * 13 11 10 41 41 H 1.09005 * 109.47119 * 59.99607 * 13 11 10 42 42 H 1.09000 * 109.47200 * 180.02562 * 13 11 10 43 43 H 0.97002 * 119.99642 * 24.99820 * 14 11 10 44 44 H 1.08997 * 109.47130 * 300.00782 * 17 15 14 45 45 H 1.09002 * 109.46610 * 60.00833 * 17 15 14 46 46 H 0.96994 * 120.00331 * 180.02562 * 22 21 19 47 47 H 1.07998 * 126.44466 * 179.73521 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5521 0.6675 0.0006 5 6 4.7570 1.5727 0.0013 6 7 5.0764 1.9640 -1.3782 7 6 6.2481 2.8492 -1.4164 8 1 6.2467 3.4921 -0.5361 9 6 7.5244 2.0056 -1.4299 10 6 6.1940 3.7126 -2.6784 11 6 4.9838 4.6458 -2.6063 12 1 4.0807 4.0578 -2.4430 13 6 4.8577 5.4199 -3.9201 14 7 5.1594 5.5888 -1.4990 15 6 4.0825 6.1504 -0.9149 16 8 2.9679 5.8750 -1.3057 17 6 4.2632 7.1200 0.2246 18 16 2.6429 7.6949 0.7902 19 6 3.1389 8.7818 2.0853 20 1 4.1876 8.9153 2.3063 21 6 2.1818 9.4665 2.8214 22 7 0.9037 9.3035 2.5524 23 14 2.7077 10.6184 4.1949 24 1 2.9047 11.9845 3.6469 25 1 1.6558 10.6521 5.2425 26 1 3.9806 10.1341 4.7869 27 6 3.5698 -0.6757 -0.0050 28 8 2.2873 -1.0890 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 4.5418 2.4637 0.5912 33 1 5.6069 1.0461 0.4355 34 1 5.2168 1.1524 -1.9610 35 1 7.5629 1.3906 -0.5308 36 1 7.5257 1.3628 -2.3102 37 1 8.3938 2.6624 -1.4588 38 1 7.1059 4.3051 -2.7527 39 1 6.1058 3.0702 -3.5546 40 1 5.7608 6.0079 -4.0834 41 1 4.7271 4.7183 -4.7441 42 1 3.9958 6.0851 -3.8687 43 1 6.0509 5.8088 -1.1862 44 1 4.7792 6.6230 1.0461 45 1 4.8537 7.9717 -0.1132 46 1 0.2349 9.7822 3.0665 47 1 4.4469 -1.3058 -0.0101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133735775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:31 Heat of formation + Delta-G solvation = -25.565054 kcal Electronic energy + Delta-G solvation = -27283.614890 eV Core-core repulsion = 23401.037913 eV Total energy + Delta-G solvation = -3882.576977 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.41049 -39.36049 -37.82839 -35.55403 -34.59398 -32.80253 -32.36000 -31.46294 -30.49354 -28.36994 -27.88315 -26.91472 -25.41316 -25.32529 -21.76977 -21.72879 -21.12893 -20.78588 -20.02839 -17.76609 -17.31606 -16.88446 -16.30718 -16.10110 -15.64905 -15.24875 -14.86796 -14.74462 -14.67695 -14.31305 -14.02653 -13.91460 -13.54180 -13.25618 -13.17394 -13.01525 -12.83023 -12.79556 -12.59043 -12.54297 -12.22834 -12.15230 -11.80419 -11.71413 -11.19413 -11.14364 -11.01460 -10.95685 -10.90191 -10.72142 -10.65198 -10.45538 -9.73214 -9.14248 -9.00215 -8.93569 -8.63503 -8.54645 -8.12220 -6.39916 -6.14652 -3.83721 1.31449 2.55226 2.63844 3.17540 3.26195 3.32595 3.34121 3.40101 3.82778 3.90263 4.09299 4.27363 4.48334 4.63861 4.67693 4.81720 4.96923 5.05405 5.17999 5.20125 5.21947 5.25442 5.26452 5.34792 5.38627 5.39414 5.55105 5.58832 5.66254 5.70925 5.73738 5.77518 5.80592 5.85670 5.90366 5.93362 6.01432 6.19408 6.24731 6.34790 6.48400 6.78495 6.95511 7.18561 7.65925 7.73001 7.95694 8.41896 8.87337 9.30413 10.92727 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008733 B = 0.002975 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3205.279473 B = 9409.747892 C =11281.065881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.189 3.811 3 N -0.456 5.456 4 C 0.001 3.999 5 C 0.141 3.859 6 N -0.670 5.670 7 C 0.082 3.918 8 H 0.084 0.916 9 C -0.183 4.183 10 C -0.112 4.112 11 C 0.148 3.852 12 H 0.104 0.896 13 C -0.164 4.164 14 N -0.733 5.733 15 C 0.532 3.468 16 O -0.512 6.512 17 C -0.153 4.153 18 S -0.058 6.058 19 C -0.535 4.535 20 H 0.071 0.929 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.917 3.083 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.273 1.273 27 C -0.084 4.084 28 O -0.207 6.207 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.045 0.955 34 H 0.337 0.663 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.391 0.609 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.267 0.733 47 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.899 -21.411 -9.181 26.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.019 4.019 3 N -0.185 5.185 4 C -0.120 4.120 5 C 0.012 3.988 6 N -0.301 5.301 7 C -0.027 4.027 8 H 0.102 0.898 9 C -0.242 4.242 10 C -0.150 4.150 11 C 0.043 3.957 12 H 0.122 0.878 13 C -0.222 4.222 14 N -0.387 5.387 15 C 0.317 3.683 16 O -0.385 6.385 17 C -0.304 4.304 18 S 0.169 5.831 19 C -0.683 4.683 20 H 0.089 0.911 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.743 3.257 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.198 1.198 27 C -0.155 4.155 28 O -0.094 6.094 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.063 0.937 34 H 0.156 0.844 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.224 0.776 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.077 0.923 47 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 9.115 -20.730 -9.794 24.673 hybrid contribution 3.273 -0.168 1.671 3.679 sum 12.388 -20.898 -8.124 25.616 Atomic orbital electron populations 1.20280 0.81262 1.05217 1.04773 1.26469 0.96673 0.78455 1.00263 1.70505 1.01460 1.29688 1.16840 1.21619 0.93447 0.92020 1.04908 1.20153 0.90279 0.97455 0.90934 1.60411 1.38805 1.21634 1.09267 1.21618 0.87241 0.94330 0.99551 0.89789 1.22527 0.99204 1.00780 1.01683 1.21867 0.97981 0.97445 0.97752 1.20844 0.99830 0.89426 0.85609 0.87831 1.22199 1.02126 1.00767 0.97130 1.46069 1.08848 1.47181 1.36609 1.20187 0.84455 0.80712 0.82906 1.90706 1.24126 1.60411 1.63296 1.23532 1.07956 1.00279 0.98612 1.85422 1.00193 1.55401 1.42101 1.22889 0.95438 1.30020 1.19992 0.91079 1.24976 0.94491 0.96675 0.97416 1.70021 0.99837 1.40743 1.39688 0.86199 0.78334 0.80442 0.80699 1.20323 1.20790 1.19754 1.24679 0.85097 0.96085 1.09641 1.84423 1.16793 1.38066 1.70150 0.88897 0.89571 0.87698 0.88854 0.93680 0.84442 0.92786 0.92432 0.91811 0.91372 0.90650 0.93109 0.92283 0.91900 0.77577 0.89648 0.89592 0.92266 0.77345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.49 10.51 36.00 0.38 -0.11 16 2 C 0.19 2.34 8.34 -12.95 -0.11 2.23 16 3 N -0.46 -7.01 11.29 -7.35 -0.08 -7.09 16 4 C 0.00 0.01 6.62 -82.81 -0.55 -0.54 16 5 C 0.14 1.54 6.02 -4.97 -0.03 1.51 16 6 N -0.67 -6.73 5.61 -107.99 -0.61 -7.34 16 7 C 0.08 0.71 2.53 -67.71 -0.17 0.53 16 8 H 0.08 0.84 7.28 -51.93 -0.38 0.46 16 9 C -0.18 -1.15 9.16 37.16 0.34 -0.81 16 10 C -0.11 -0.97 4.43 -26.73 -0.12 -1.09 16 11 C 0.15 1.86 2.52 -67.93 -0.17 1.69 16 12 H 0.10 1.69 7.05 -51.93 -0.37 1.32 16 13 C -0.16 -1.99 9.48 37.16 0.35 -1.64 16 14 N -0.73 -10.26 4.45 -53.80 -0.24 -10.50 16 15 C 0.53 10.43 7.81 -10.98 -0.09 10.34 16 16 O -0.51 -12.30 15.52 5.56 0.09 -12.21 16 17 C -0.15 -3.22 6.16 36.01 0.22 -3.00 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 19 C -0.54 -15.62 9.50 30.94 0.29 -15.33 16 20 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 21 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 22 N -0.87 -26.69 13.22 55.49 0.73 -25.95 16 23 Si 0.92 21.81 29.55 -169.99 -5.02 16.78 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 C -0.08 -0.83 12.08 29.36 0.35 -0.47 16 28 O -0.21 -2.36 10.78 5.36 0.06 -2.30 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 33 H 0.05 0.37 7.44 -51.93 -0.39 -0.02 16 34 H 0.34 2.86 8.47 -39.29 -0.33 2.53 16 35 H 0.05 0.33 7.45 -51.93 -0.39 -0.05 16 36 H 0.06 0.32 8.13 -51.93 -0.42 -0.10 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.39 4.31 8.60 -40.82 -0.35 3.96 16 44 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 45 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 46 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 47 H 0.21 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 409.20 15.07 6.17 6.17 Total: -1.00 -37.98 409.20 -8.17 -46.15 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -7.66 Total: 4.77 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 0.61 Total: -4.63 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.19 Total: -50.88 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.14 Total: -14.52 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.98 -8.17 -46.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133735775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.581 kcal (2) G-P(sol) polarization free energy of solvation -37.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds