Wall clock time and date at job start Sat Apr 11 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 S 1.77233 * 127.33607 * 2 1 4 4 C 1.72213 * 94.84371 * 179.81220 * 3 2 1 5 5 O 1.21826 * 127.05483 * 180.20360 * 4 3 2 6 6 N 1.34241 * 105.88293 * 0.31820 * 4 3 2 7 7 C 1.46504 * 121.37753 * 179.87794 * 6 4 3 8 8 C 1.50707 * 109.47063 * 269.72366 * 7 6 4 9 9 O 1.21272 * 120.00150 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99511 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99550 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47509 * 324.99724 * 11 10 8 13 13 C 1.52999 * 109.47410 * 85.00095 * 11 10 8 14 14 C 1.52998 * 109.47164 * 205.00192 * 11 10 8 15 15 C 1.52998 * 109.47384 * 64.99625 * 14 11 10 16 16 H 1.09003 * 109.47082 * 305.00221 * 15 14 11 17 17 C 1.52995 * 109.47443 * 185.00170 * 15 14 11 18 18 N 1.46498 * 109.47009 * 65.00045 * 15 14 11 19 19 C 1.36935 * 120.00239 * 204.99963 * 18 15 14 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 15 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72270 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72118 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72153 * 23 21 19 27 27 C 1.32560 * 127.34203 * 180.02562 * 2 1 3 28 28 C 1.50702 * 121.64656 * 0.02562 * 27 2 1 29 29 H 1.08995 * 109.46881 * 269.99796 * 1 2 3 30 30 H 1.08996 * 109.46884 * 29.99882 * 1 2 3 31 31 H 1.09003 * 109.46610 * 149.99807 * 1 2 3 32 32 H 1.09002 * 109.47099 * 149.72422 * 7 6 4 33 33 H 1.08994 * 109.46977 * 29.72314 * 7 6 4 34 34 H 0.96994 * 120.00258 * 0.02562 * 10 8 7 35 35 H 1.09003 * 109.47191 * 299.99550 * 13 11 10 36 36 H 1.08996 * 109.47126 * 60.00048 * 13 11 10 37 37 H 1.09004 * 109.47346 * 179.97438 * 13 11 10 38 38 H 1.08997 * 109.46877 * 305.00014 * 14 11 10 39 39 H 1.08999 * 109.47306 * 185.00166 * 14 11 10 40 40 H 1.09003 * 109.46933 * 60.00266 * 17 15 14 41 41 H 1.09004 * 109.47411 * 179.97438 * 17 15 14 42 42 H 1.08996 * 109.47329 * 300.00343 * 17 15 14 43 43 H 0.97004 * 119.99747 * 25.00702 * 18 15 14 44 44 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 45 45 H 1.09000 * 109.47365 * 269.98245 * 28 27 2 46 46 H 1.09005 * 109.46936 * 29.98101 * 28 27 2 47 47 H 1.09000 * 109.46867 * 149.97670 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5820 1.4092 0.0000 4 6 4.0345 0.4841 0.0056 5 8 5.1760 0.9098 0.0112 6 7 3.6508 -0.8023 0.0000 7 6 4.6314 -1.8908 -0.0001 8 6 4.9676 -2.2640 -1.4210 9 8 4.4405 -1.6781 -2.3427 10 7 5.8549 -3.2481 -1.6673 11 6 6.1821 -3.6104 -3.0485 12 1 5.2941 -3.5055 -3.6719 13 6 7.2840 -2.6864 -3.5709 14 6 6.6684 -5.0604 -3.0939 15 6 5.5258 -5.9944 -2.6902 16 1 5.1395 -5.6958 -1.7157 17 6 6.0445 -7.4318 -2.6146 18 7 4.4542 -5.9137 -3.6859 19 6 3.1671 -6.2205 -3.3330 20 1 2.9419 -6.5215 -2.3205 21 6 2.1518 -6.1445 -4.2765 22 7 2.4254 -5.7724 -5.5090 23 14 0.3960 -6.5623 -3.7949 24 1 0.1517 -8.0095 -4.0213 25 1 0.1872 -6.2436 -2.3597 26 1 -0.5467 -5.7660 -4.6210 27 6 2.3112 -1.0539 -0.0005 28 6 1.7708 -2.4607 -0.0017 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 4.2134 -2.7565 0.5137 33 1 5.5358 -1.5651 0.5137 34 1 6.2768 -3.7165 -0.9301 35 1 6.9375 -1.6534 -3.5387 36 1 8.1720 -2.7915 -2.9477 37 1 7.5278 -2.9563 -4.5985 38 1 7.5016 -5.1859 -2.4026 39 1 6.9955 -5.3024 -4.1051 40 1 6.8418 -7.4918 -1.8738 41 1 5.2306 -8.0972 -2.3266 42 1 6.4308 -7.7304 -3.5891 43 1 4.6564 -5.6431 -4.5952 44 1 3.3370 -5.5551 -5.7591 45 1 1.6404 -2.8008 1.0257 46 1 0.8097 -2.4803 -0.5156 47 1 2.4714 -3.1185 -0.5161 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146584985.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:45 Heat of formation + Delta-G solvation = -62.468270 kcal Electronic energy + Delta-G solvation = -28884.852945 eV Core-core repulsion = 25000.675724 eV Total energy + Delta-G solvation = -3884.177221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.36802 -40.61589 -38.86378 -38.40985 -36.28747 -34.64769 -34.18013 -32.53429 -30.91113 -30.20963 -29.96383 -27.70583 -26.13100 -25.52268 -24.88891 -22.72495 -21.83206 -21.37826 -20.89090 -19.44862 -19.28568 -18.77587 -18.16428 -17.19860 -16.94689 -16.66491 -16.33256 -16.17324 -15.86321 -15.42215 -15.07448 -14.92665 -14.86618 -14.71323 -14.52782 -14.44726 -13.73898 -13.65205 -13.58543 -13.49293 -13.34527 -13.18579 -12.95419 -12.90041 -12.74622 -12.54896 -12.47258 -12.16773 -11.93074 -11.92319 -11.84126 -11.59191 -11.31289 -11.22107 -11.14989 -10.87944 -10.41222 -10.13965 -9.02861 -8.93145 -8.30214 -5.22573 -0.19188 0.30943 0.68338 0.98828 1.47902 1.56720 1.59854 1.68133 1.81148 2.18339 2.75766 3.43634 3.49154 3.59819 3.70633 3.74316 3.87544 3.99278 4.02020 4.06232 4.22015 4.26753 4.43503 4.50881 4.56872 4.61405 4.68381 4.71003 4.72514 4.84463 4.84605 4.92421 4.99652 5.01370 5.04653 5.10504 5.22503 5.31896 5.35549 5.50050 5.54963 5.62763 5.68205 6.11134 6.46801 6.55771 7.17409 7.18887 8.08543 8.21858 9.21895 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009776 B = 0.004307 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.392998 B = 6499.788302 C = 8525.116773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.201 4.201 3 S 0.003 5.997 4 C 0.469 3.531 5 O -0.518 6.518 6 N -0.513 5.513 7 C 0.083 3.917 8 C 0.492 3.508 9 O -0.578 6.578 10 N -0.697 5.697 11 C 0.151 3.849 12 H 0.043 0.957 13 C -0.153 4.153 14 C -0.118 4.118 15 C 0.171 3.829 16 H 0.050 0.950 17 C -0.156 4.156 18 N -0.745 5.745 19 C -0.310 4.310 20 H 0.067 0.933 21 C -0.110 4.110 22 N -0.983 5.983 23 Si 1.119 2.881 24 H -0.289 1.289 25 H -0.262 1.262 26 H -0.301 1.301 27 C 0.089 3.911 28 C -0.098 4.098 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.159 0.841 33 H 0.141 0.859 34 H 0.417 0.583 35 H 0.029 0.971 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.030 0.970 42 H 0.037 0.963 43 H 0.353 0.647 44 H 0.241 0.759 45 H 0.120 0.880 46 H 0.098 0.902 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.432 5.960 18.164 19.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.320 4.320 3 S 0.247 5.753 4 C 0.153 3.847 5 O -0.402 6.402 6 N -0.232 5.232 7 C -0.045 4.045 8 C 0.278 3.722 9 O -0.457 6.457 10 N -0.350 5.350 11 C 0.046 3.954 12 H 0.062 0.938 13 C -0.211 4.211 14 C -0.157 4.157 15 C 0.063 3.937 16 H 0.068 0.932 17 C -0.216 4.216 18 N -0.387 5.387 19 C -0.442 4.442 20 H 0.085 0.915 21 C -0.301 4.301 22 N -0.632 5.632 23 Si 0.944 3.056 24 H -0.216 1.216 25 H -0.187 1.187 26 H -0.229 1.229 27 C -0.020 4.020 28 C -0.157 4.157 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.177 0.823 33 H 0.159 0.841 34 H 0.254 0.746 35 H 0.048 0.952 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.128 0.872 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.185 0.815 44 H 0.051 0.949 45 H 0.138 0.862 46 H 0.116 0.884 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.990 7.781 17.229 19.009 hybrid contribution 2.313 -1.220 -0.336 2.636 sum 4.302 6.561 16.893 18.626 Atomic orbital electron populations 1.20309 0.83138 1.04192 1.04478 1.23986 1.01006 0.90502 1.16554 1.84840 0.97515 1.12221 1.80750 1.21807 0.94777 0.85568 0.82540 1.90894 1.20699 1.72847 1.55765 1.45583 1.06739 1.06715 1.64150 1.21921 0.95657 0.92541 0.94417 1.21262 0.78972 0.80088 0.91907 1.90756 1.53380 1.53948 1.47614 1.45732 1.43597 1.36409 1.09294 1.20771 0.97296 0.94803 0.82503 0.93841 1.22091 0.98682 0.98167 1.02140 1.22094 0.98478 0.91500 1.03602 1.20444 0.87527 0.93430 0.92304 0.93243 1.22303 1.00145 0.98285 1.00885 1.42673 1.04484 1.82305 1.09245 1.20287 0.86907 1.40032 0.96971 0.91500 1.26995 1.07577 1.01616 0.93902 1.70960 1.20537 1.51900 1.19797 0.82756 0.71293 0.75954 0.75549 1.21624 1.18703 1.22852 1.19684 0.81223 0.99622 1.01447 1.20873 1.02318 0.87189 1.05335 0.88164 0.90369 0.89214 0.82317 0.84127 0.74569 0.95207 0.89771 0.91205 0.87240 0.90921 0.90317 0.95071 0.94369 0.81527 0.94904 0.86209 0.88360 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.10 71.24 0.72 -0.21 16 2 C -0.20 -4.56 6.72 24.54 0.16 -4.40 16 3 S 0.00 0.08 22.97 -56.49 -1.30 -1.22 16 4 C 0.47 15.14 8.27 129.87 1.07 16.22 16 5 O -0.52 -19.49 17.55 -4.75 -0.08 -19.57 16 6 N -0.51 -14.16 2.09 -647.49 -1.35 -15.52 16 7 C 0.08 1.89 5.47 85.63 0.47 2.35 16 8 C 0.49 15.59 7.60 87.66 0.67 16.25 16 9 O -0.58 -25.42 16.09 -3.01 -0.05 -25.47 16 10 N -0.70 -18.18 4.45 -442.54 -1.97 -20.15 16 11 C 0.15 4.68 2.52 44.99 0.11 4.79 16 12 H 0.04 1.90 7.06 -2.39 -0.02 1.88 16 13 C -0.15 -4.18 9.48 71.98 0.68 -3.49 16 14 C -0.12 -3.15 4.29 30.59 0.13 -3.02 16 15 C 0.17 5.81 2.84 44.99 0.13 5.93 16 16 H 0.05 1.65 7.56 -2.39 -0.02 1.64 16 17 C -0.16 -4.81 9.49 71.98 0.68 -4.12 16 18 N -0.75 -35.20 4.49 -322.95 -1.45 -36.65 16 19 C -0.31 -16.57 9.93 84.03 0.83 -15.74 16 20 H 0.07 3.43 7.83 -2.91 -0.02 3.41 16 21 C -0.11 -6.32 5.50 84.86 0.47 -5.85 16 22 N -0.98 -62.28 13.70 21.65 0.30 -61.98 16 23 Si 1.12 51.12 29.92 68.60 2.05 53.17 16 24 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 25 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 26 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 27 C 0.09 2.17 6.59 40.71 0.27 2.44 16 28 C -0.10 -1.97 9.07 71.24 0.65 -1.32 16 29 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.25 6.77 -2.39 -0.02 1.23 16 32 H 0.16 2.36 6.83 -2.39 -0.02 2.34 16 33 H 0.14 2.63 7.80 -2.39 -0.02 2.61 16 34 H 0.42 7.12 8.60 -92.71 -0.80 6.32 16 35 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.35 18.27 6.63 -92.71 -0.61 17.66 16 44 H 0.24 15.33 6.77 -92.71 -0.63 14.70 16 45 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.10 1.89 6.69 -2.38 -0.02 1.88 16 47 H 0.06 1.44 6.70 -2.39 -0.02 1.42 16 Total: -1.00 -84.72 399.23 2.92 -81.80 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: -0.27 Total: 35.75 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 7.05 Total: 9.84 kcal Atomic # 7 Polarization: -129.83 SS G_CDS: -4.48 Total: -134.30 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -0.13 Total: -45.04 kcal Atomic # 14 Polarization: 51.12 SS G_CDS: 2.05 Total: 53.17 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -1.30 Total: -1.22 kcal Total: -84.72 2.92 -81.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146584985.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.336 kcal (2) G-P(sol) polarization free energy of solvation -84.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds