Wall clock time and date at job start Sat Apr 11 2020 06:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 S 1.77228 * 127.34105 * 2 1 4 4 C 1.72210 * 94.84817 * 180.02562 * 3 2 1 5 5 O 1.21830 * 127.05695 * 179.97438 * 4 3 2 6 6 N 1.34239 * 105.88581 * 359.97438 * 4 3 2 7 7 C 1.46500 * 121.38060 * 179.97438 * 6 4 3 8 8 C 1.50703 * 109.46982 * 270.02074 * 7 6 4 9 9 O 1.21277 * 119.99952 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99650 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99736 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.46969 * 34.99806 * 11 10 8 13 13 C 1.53000 * 109.47229 * 275.00005 * 11 10 8 14 14 C 1.52999 * 109.47016 * 155.00056 * 11 10 8 15 15 C 1.53004 * 109.47141 * 294.99955 * 14 11 10 16 16 H 1.08996 * 109.46657 * 305.00077 * 15 14 11 17 17 C 1.52994 * 109.46867 * 185.00082 * 15 14 11 18 18 N 1.46496 * 109.46906 * 65.00197 * 15 14 11 19 19 C 1.36937 * 120.00022 * 205.00138 * 18 15 14 20 20 H 1.07999 * 119.99502 * 359.97438 * 19 18 15 21 21 C 1.38813 * 120.00197 * 180.02562 * 19 18 15 22 22 N 1.31615 * 120.00135 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99800 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47006 * 90.00561 * 23 21 19 25 25 H 1.48506 * 109.46785 * 210.00304 * 23 21 19 26 26 H 1.48491 * 109.47239 * 330.00100 * 23 21 19 27 27 C 1.32569 * 127.34061 * 180.02562 * 2 1 3 28 28 C 1.50696 * 121.64635 * 0.26947 * 27 2 1 29 29 H 1.08999 * 109.47372 * 269.99883 * 1 2 3 30 30 H 1.08995 * 109.47381 * 30.00322 * 1 2 3 31 31 H 1.09006 * 109.46963 * 149.99989 * 1 2 3 32 32 H 1.08994 * 109.47081 * 30.02482 * 7 6 4 33 33 H 1.09008 * 109.47151 * 150.02390 * 7 6 4 34 34 H 0.96998 * 120.00380 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.47462 * 179.97438 * 13 11 10 36 36 H 1.08997 * 109.47247 * 300.00425 * 13 11 10 37 37 H 1.09007 * 109.46876 * 60.00038 * 13 11 10 38 38 H 1.09000 * 109.47229 * 55.00096 * 14 11 10 39 39 H 1.09000 * 109.46908 * 174.99866 * 14 11 10 40 40 H 1.09003 * 109.47259 * 180.02562 * 17 15 14 41 41 H 1.09004 * 109.47155 * 300.00020 * 17 15 14 42 42 H 1.08998 * 109.47679 * 60.00169 * 17 15 14 43 43 H 0.96998 * 120.00305 * 24.99829 * 18 15 14 44 44 H 0.96999 * 120.00205 * 180.02562 * 22 21 19 45 45 H 1.09008 * 109.47492 * 269.71878 * 28 27 2 46 46 H 1.09006 * 109.47117 * 29.71148 * 28 27 2 47 47 H 1.09000 * 109.47574 * 149.71992 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5819 1.4090 0.0000 4 6 4.0345 0.4839 -0.0008 5 8 5.1760 0.9096 -0.0015 6 7 3.6508 -0.8025 -0.0004 7 6 4.6313 -1.8910 -0.0014 8 6 4.9664 -2.2638 -1.4226 9 8 4.4379 -1.6783 -2.3439 10 7 5.8535 -3.2479 -1.6698 11 6 6.1797 -3.6100 -3.0514 12 1 6.1668 -2.7155 -3.6742 13 6 5.1465 -4.6101 -3.5741 14 6 7.5716 -4.2436 -3.0975 15 6 8.6189 -3.2039 -2.6935 16 1 8.5207 -2.3237 -3.3287 17 6 10.0185 -3.7991 -2.8591 18 7 8.4131 -2.8219 -1.2943 19 6 8.8422 -1.6005 -0.8478 20 1 9.3326 -0.9191 -1.5272 21 6 8.6477 -1.2386 0.4781 22 7 9.0606 -0.0649 0.9073 23 14 7.8000 -2.4176 1.6533 24 1 8.8152 -3.2882 2.2990 25 1 7.0770 -1.6440 2.6946 26 1 6.8341 -3.2576 0.9007 27 6 2.3110 -1.0540 -0.0005 28 6 1.7707 -2.4607 -0.0071 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 5.5360 -1.5654 0.5118 33 1 4.2136 -2.7568 0.5125 34 1 6.2759 -3.7165 -0.9330 35 1 5.3889 -4.8792 -4.6021 36 1 5.1593 -5.5046 -2.9513 37 1 4.1549 -4.1587 -3.5412 38 1 7.6104 -5.0859 -2.4067 39 1 7.7782 -4.5935 -4.1089 40 1 10.7647 -3.0586 -2.5709 41 1 10.1166 -4.6794 -2.2239 42 1 10.1717 -4.0834 -3.9002 43 1 7.9729 -3.4340 -0.6840 44 1 8.9250 0.1878 1.8340 45 1 1.6412 -2.8052 1.0190 46 1 0.8091 -2.4781 -0.5202 47 1 2.4707 -3.1165 -0.5248 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146584986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:00 Heat of formation + Delta-G solvation = -19.265695 kcal Electronic energy + Delta-G solvation = -29728.143420 eV Core-core repulsion = 25845.839604 eV Total energy + Delta-G solvation = -3882.303816 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 4.19 seconds Orbital eigenvalues (eV) -41.02942 -39.25477 -37.40206 -36.96055 -34.38622 -33.49845 -32.38536 -31.22526 -29.97871 -29.34100 -28.80759 -26.48109 -25.06884 -23.55013 -23.34155 -21.38834 -20.65068 -19.89337 -19.47600 -18.11941 -17.58504 -17.35082 -16.84670 -15.87256 -15.45192 -15.22857 -14.79810 -14.67512 -14.35831 -13.95189 -13.85495 -13.65317 -13.57276 -13.43308 -13.18863 -13.03027 -12.80860 -12.57563 -12.53190 -12.34720 -12.17010 -12.07856 -11.93718 -11.79136 -11.26186 -11.14524 -10.92109 -10.80877 -10.79342 -10.59651 -10.34368 -10.05090 -9.84351 -9.72601 -9.59113 -9.11557 -9.01773 -8.65613 -7.66156 -7.25501 -5.74500 -3.09018 1.17040 1.54098 1.91787 2.40194 2.83234 2.91131 2.97748 3.24548 3.31247 3.56295 4.48466 4.49038 4.77761 4.84242 4.92071 5.00338 5.12780 5.20357 5.22947 5.24311 5.25500 5.38787 5.44849 5.45667 5.54199 5.57580 5.67882 5.73641 5.77543 5.81466 5.82059 5.99083 6.11057 6.17327 6.26578 6.29914 6.36384 6.42343 6.75319 6.84734 6.89801 6.97698 7.63581 7.79094 7.99916 8.43427 8.49736 9.19161 9.90319 10.09540 11.44852 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012015 B = 0.004944 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.784471 B = 5662.233177 C = 6976.753710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.217 4.217 3 S -0.014 6.014 4 C 0.486 3.514 5 O -0.433 6.433 6 N -0.515 5.515 7 C 0.077 3.923 8 C 0.514 3.486 9 O -0.536 6.536 10 N -0.699 5.699 11 C 0.148 3.852 12 H 0.088 0.912 13 C -0.161 4.161 14 C -0.136 4.136 15 C 0.175 3.825 16 H 0.056 0.944 17 C -0.164 4.164 18 N -0.741 5.741 19 C -0.239 4.239 20 H 0.090 0.910 21 C 0.011 3.989 22 N -0.921 5.921 23 Si 0.873 3.127 24 H -0.284 1.284 25 H -0.289 1.289 26 H -0.287 1.287 27 C 0.108 3.892 28 C -0.099 4.099 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.126 0.874 33 H 0.112 0.888 34 H 0.399 0.601 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.044 0.956 42 H 0.039 0.961 43 H 0.352 0.648 44 H 0.259 0.741 45 H 0.084 0.916 46 H 0.090 0.910 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.064 -10.320 -2.913 20.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.337 4.337 3 S 0.229 5.771 4 C 0.166 3.834 5 O -0.308 6.308 6 N -0.236 5.236 7 C -0.052 4.052 8 C 0.298 3.702 9 O -0.413 6.413 10 N -0.353 5.353 11 C 0.044 3.956 12 H 0.106 0.894 13 C -0.219 4.219 14 C -0.174 4.174 15 C 0.066 3.934 16 H 0.074 0.926 17 C -0.224 4.224 18 N -0.386 5.386 19 C -0.369 4.369 20 H 0.107 0.893 21 C -0.186 4.186 22 N -0.568 5.568 23 Si 0.706 3.294 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.215 1.215 27 C -0.002 4.002 28 C -0.158 4.158 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.144 0.856 33 H 0.130 0.870 34 H 0.237 0.763 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.185 0.815 44 H 0.069 0.931 45 H 0.102 0.898 46 H 0.109 0.891 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.726 -8.010 -3.545 18.881 hybrid contribution 0.247 -2.361 1.385 2.749 sum -16.479 -10.371 -2.160 19.590 Atomic orbital electron populations 1.20042 0.86032 1.03005 1.02418 1.23313 0.99338 0.92299 1.18714 1.84924 0.98437 1.11481 1.82251 1.21514 0.94627 0.84625 0.82641 1.91168 1.18446 1.70831 1.50328 1.45573 1.05399 1.07103 1.65555 1.21878 0.95048 0.91104 0.97187 1.20345 0.79570 0.79704 0.90576 1.90680 1.52871 1.52199 1.45544 1.46067 1.43276 1.37010 1.08966 1.20898 0.93532 0.98167 0.83021 0.89431 1.22194 0.99776 0.99028 1.00934 1.22252 0.94062 0.98999 1.02123 1.20245 0.91382 0.94804 0.87007 0.92564 1.22390 1.00096 1.00931 0.98964 1.42794 1.71699 1.18216 1.05849 1.19014 1.31502 0.91776 0.94581 0.89254 1.24623 1.01078 0.96227 0.96645 1.69626 1.51509 1.19896 1.15814 0.86935 0.79574 0.80627 0.82239 1.21122 1.21568 1.21515 1.19132 0.82116 0.97904 1.01082 1.20743 1.02086 0.89582 1.03395 0.90981 0.91040 0.90655 0.85591 0.86963 0.76346 0.91778 0.92801 0.92434 0.91818 0.90224 0.92320 0.93729 0.94232 0.81503 0.93054 0.89783 0.89148 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.11 36.00 0.36 -0.10 16 2 C -0.22 -2.78 6.72 -36.22 -0.24 -3.02 16 3 S -0.01 -0.22 22.97 -107.50 -2.47 -2.69 16 4 C 0.49 10.19 8.27 53.81 0.45 10.64 16 5 O -0.43 -11.25 17.55 5.07 0.09 -11.17 16 6 N -0.52 -9.23 2.09 -118.57 -0.25 -9.48 16 7 C 0.08 1.37 5.02 -5.19 -0.03 1.35 16 8 C 0.51 9.68 7.58 -10.98 -0.08 9.60 16 9 O -0.54 -11.52 16.09 5.56 0.09 -11.43 16 10 N -0.70 -11.66 3.80 -53.80 -0.20 -11.87 16 11 C 0.15 2.22 2.57 -67.93 -0.17 2.04 16 12 H 0.09 1.55 7.58 -51.93 -0.39 1.15 16 13 C -0.16 -1.90 9.48 37.16 0.35 -1.54 16 14 C -0.14 -1.87 4.43 -26.73 -0.12 -1.98 16 15 C 0.17 3.15 2.89 -67.93 -0.20 2.95 16 16 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 17 C -0.16 -2.71 9.49 37.15 0.35 -2.35 16 18 N -0.74 -16.15 3.65 -53.43 -0.19 -16.35 16 19 C -0.24 -6.57 10.41 -15.06 -0.16 -6.73 16 20 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 21 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 22 N -0.92 -29.40 13.97 55.49 0.78 -28.62 16 23 Si 0.87 20.71 25.13 -169.99 -4.27 16.44 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -5.56 4.59 56.52 0.26 -5.30 16 27 C 0.11 1.50 6.59 -82.51 -0.54 0.95 16 28 C -0.10 -0.92 9.07 36.00 0.33 -0.60 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.49 6.76 -51.93 -0.35 0.13 16 32 H 0.13 2.69 4.65 -51.93 -0.24 2.44 16 33 H 0.11 1.49 6.84 -51.92 -0.36 1.13 16 34 H 0.40 6.45 5.11 -40.82 -0.21 6.24 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.35 7.21 3.78 -40.82 -0.15 7.06 16 44 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 45 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 46 H 0.09 0.65 6.68 -51.93 -0.35 0.30 16 47 H 0.07 0.72 6.70 -51.93 -0.35 0.37 16 LS Contribution 384.30 15.07 5.79 5.79 Total: -1.00 -36.30 384.30 -7.61 -43.91 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -7.17 Total: 14.06 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 0.20 Total: 11.40 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: 0.13 Total: -66.32 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.18 Total: -22.59 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.27 Total: 16.44 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -2.47 Total: -2.69 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.30 -7.61 -43.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146584986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.642 kcal (2) G-P(sol) polarization free energy of solvation -36.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.19 seconds