Wall clock time and date at job start Sat Apr 11 2020 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 S 1.77228 * 127.34105 * 2 1 4 4 C 1.72210 * 94.84817 * 180.02562 * 3 2 1 5 5 O 1.21830 * 127.05695 * 179.97438 * 4 3 2 6 6 N 1.34239 * 105.88581 * 359.97438 * 4 3 2 7 7 C 1.46500 * 121.38060 * 179.97438 * 6 4 3 8 8 C 1.50703 * 109.46982 * 270.02074 * 7 6 4 9 9 O 1.21277 * 119.99952 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99650 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99736 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.46969 * 34.99806 * 11 10 8 13 13 C 1.53000 * 109.47229 * 275.00005 * 11 10 8 14 14 C 1.52999 * 109.47016 * 155.00056 * 11 10 8 15 15 C 1.53004 * 109.47141 * 294.99955 * 14 11 10 16 16 H 1.08996 * 109.46657 * 305.00077 * 15 14 11 17 17 C 1.52994 * 109.46867 * 185.00082 * 15 14 11 18 18 N 1.46496 * 109.46906 * 65.00197 * 15 14 11 19 19 C 1.36937 * 120.00022 * 205.00138 * 18 15 14 20 20 H 1.07999 * 119.99502 * 359.97438 * 19 18 15 21 21 C 1.38813 * 120.00197 * 180.02562 * 19 18 15 22 22 N 1.31615 * 120.00135 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99800 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47006 * 90.00561 * 23 21 19 25 25 H 1.48506 * 109.46785 * 210.00304 * 23 21 19 26 26 H 1.48491 * 109.47239 * 330.00100 * 23 21 19 27 27 C 1.32569 * 127.34061 * 180.02562 * 2 1 3 28 28 C 1.50696 * 121.64635 * 0.26947 * 27 2 1 29 29 H 1.08999 * 109.47372 * 269.99883 * 1 2 3 30 30 H 1.08995 * 109.47381 * 30.00322 * 1 2 3 31 31 H 1.09006 * 109.46963 * 149.99989 * 1 2 3 32 32 H 1.08994 * 109.47081 * 30.02482 * 7 6 4 33 33 H 1.09008 * 109.47151 * 150.02390 * 7 6 4 34 34 H 0.96998 * 120.00380 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.47462 * 179.97438 * 13 11 10 36 36 H 1.08997 * 109.47247 * 300.00425 * 13 11 10 37 37 H 1.09007 * 109.46876 * 60.00038 * 13 11 10 38 38 H 1.09000 * 109.47229 * 55.00096 * 14 11 10 39 39 H 1.09000 * 109.46908 * 174.99866 * 14 11 10 40 40 H 1.09003 * 109.47259 * 180.02562 * 17 15 14 41 41 H 1.09004 * 109.47155 * 300.00020 * 17 15 14 42 42 H 1.08998 * 109.47679 * 60.00169 * 17 15 14 43 43 H 0.96998 * 120.00305 * 24.99829 * 18 15 14 44 44 H 0.96999 * 120.00205 * 180.02562 * 22 21 19 45 45 H 1.09008 * 109.47492 * 269.71878 * 28 27 2 46 46 H 1.09006 * 109.47117 * 29.71148 * 28 27 2 47 47 H 1.09000 * 109.47574 * 149.71992 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5819 1.4090 0.0000 4 6 4.0345 0.4839 -0.0008 5 8 5.1760 0.9096 -0.0015 6 7 3.6508 -0.8025 -0.0004 7 6 4.6313 -1.8910 -0.0014 8 6 4.9664 -2.2638 -1.4226 9 8 4.4379 -1.6783 -2.3439 10 7 5.8535 -3.2479 -1.6698 11 6 6.1797 -3.6100 -3.0514 12 1 6.1668 -2.7155 -3.6742 13 6 5.1465 -4.6101 -3.5741 14 6 7.5716 -4.2436 -3.0975 15 6 8.6189 -3.2039 -2.6935 16 1 8.5207 -2.3237 -3.3287 17 6 10.0185 -3.7991 -2.8591 18 7 8.4131 -2.8219 -1.2943 19 6 8.8422 -1.6005 -0.8478 20 1 9.3326 -0.9191 -1.5272 21 6 8.6477 -1.2386 0.4781 22 7 9.0606 -0.0649 0.9073 23 14 7.8000 -2.4176 1.6533 24 1 8.8152 -3.2882 2.2990 25 1 7.0770 -1.6440 2.6946 26 1 6.8341 -3.2576 0.9007 27 6 2.3110 -1.0540 -0.0005 28 6 1.7707 -2.4607 -0.0071 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 5.5360 -1.5654 0.5118 33 1 4.2136 -2.7568 0.5125 34 1 6.2759 -3.7165 -0.9330 35 1 5.3889 -4.8792 -4.6021 36 1 5.1593 -5.5046 -2.9513 37 1 4.1549 -4.1587 -3.5412 38 1 7.6104 -5.0859 -2.4067 39 1 7.7782 -4.5935 -4.1089 40 1 10.7647 -3.0586 -2.5709 41 1 10.1166 -4.6794 -2.2239 42 1 10.1717 -4.0834 -3.9002 43 1 7.9729 -3.4340 -0.6840 44 1 8.9250 0.1878 1.8340 45 1 1.6412 -2.8052 1.0190 46 1 0.8091 -2.4781 -0.5202 47 1 2.4707 -3.1165 -0.5248 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146584986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:52 Heat of formation + Delta-G solvation = -46.721070 kcal Electronic energy + Delta-G solvation = -29729.333974 eV Core-core repulsion = 25845.839604 eV Total energy + Delta-G solvation = -3883.494371 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 5.42 seconds Orbital eigenvalues (eV) -42.37198 -40.65804 -38.89945 -38.44829 -35.97874 -34.66507 -34.19372 -32.76680 -31.25235 -30.66040 -29.94734 -27.64914 -26.06899 -25.37117 -24.91508 -22.68411 -22.08740 -21.34131 -20.82496 -19.63604 -19.30391 -18.76027 -18.24982 -17.26974 -16.84628 -16.69063 -16.51297 -16.09603 -16.00090 -15.14696 -15.08872 -14.97912 -14.87771 -14.57172 -14.41852 -14.32375 -14.17174 -13.79378 -13.65851 -13.50208 -13.44333 -13.19267 -12.94428 -12.87875 -12.71977 -12.60218 -12.45718 -12.41276 -12.10588 -11.87843 -11.85551 -11.69105 -11.51340 -11.30168 -11.20044 -11.00402 -10.42156 -10.09749 -9.24810 -8.91183 -8.00604 -5.32207 -0.22917 0.33943 0.75408 1.00460 1.04362 1.28228 1.37345 1.45612 1.63230 2.23963 2.43488 3.32096 3.40743 3.51408 3.60613 3.70703 3.79476 3.90309 4.06330 4.07907 4.24359 4.28486 4.50561 4.55203 4.60285 4.65107 4.72086 4.76657 4.82749 4.86060 4.89266 5.00871 5.04264 5.04922 5.07328 5.10637 5.32345 5.34501 5.40958 5.53921 5.58587 5.64468 5.78566 6.20246 6.20434 6.41284 7.08455 7.10771 7.82428 8.03922 9.22495 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012015 B = 0.004944 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.784471 B = 5662.233177 C = 6976.753710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.197 4.197 3 S -0.008 6.008 4 C 0.454 3.546 5 O -0.516 6.516 6 N -0.515 5.515 7 C 0.071 3.929 8 C 0.510 3.490 9 O -0.571 6.571 10 N -0.693 5.693 11 C 0.142 3.858 12 H 0.049 0.951 13 C -0.147 4.147 14 C -0.121 4.121 15 C 0.164 3.836 16 H 0.022 0.978 17 C -0.155 4.155 18 N -0.737 5.737 19 C -0.221 4.221 20 H 0.036 0.964 21 C -0.068 4.068 22 N -0.984 5.984 23 Si 0.947 3.053 24 H -0.276 1.276 25 H -0.308 1.308 26 H -0.224 1.224 27 C 0.084 3.916 28 C -0.095 4.095 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.165 0.835 34 H 0.403 0.597 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.021 0.979 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.363 0.637 44 H 0.250 0.750 45 H 0.113 0.887 46 H 0.119 0.881 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.973 -15.664 -3.147 26.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.316 4.316 3 S 0.235 5.765 4 C 0.137 3.863 5 O -0.398 6.398 6 N -0.235 5.235 7 C -0.058 4.058 8 C 0.294 3.706 9 O -0.451 6.451 10 N -0.346 5.346 11 C 0.038 3.962 12 H 0.068 0.932 13 C -0.205 4.205 14 C -0.159 4.159 15 C 0.057 3.943 16 H 0.040 0.960 17 C -0.214 4.214 18 N -0.382 5.382 19 C -0.352 4.352 20 H 0.054 0.946 21 C -0.259 4.259 22 N -0.634 5.634 23 Si 0.775 3.225 24 H -0.202 1.202 25 H -0.236 1.236 26 H -0.149 1.149 27 C -0.025 4.025 28 C -0.154 4.154 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.182 0.818 34 H 0.241 0.759 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.110 0.890 39 H 0.134 0.866 40 H 0.040 0.960 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.198 0.802 44 H 0.059 0.941 45 H 0.131 0.869 46 H 0.137 0.863 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.699 -13.471 -3.847 24.994 hybrid contribution 1.408 -0.591 1.304 2.008 sum -19.291 -14.061 -2.544 24.007 Atomic orbital electron populations 1.20317 0.82024 1.04709 1.04429 1.24121 1.01083 0.89537 1.16863 1.84800 0.97329 1.13097 1.81268 1.22199 0.94950 0.86283 0.82873 1.91112 1.21601 1.72921 1.54205 1.45674 1.07196 1.06085 1.64553 1.21986 0.94439 0.92650 0.96682 1.20569 0.79673 0.79666 0.90658 1.90655 1.54417 1.53382 1.46600 1.46106 1.42245 1.36292 1.09978 1.21071 0.95703 0.97828 0.81573 0.93245 1.22071 0.97476 0.98464 1.02534 1.22191 0.91089 0.97727 1.04881 1.20504 0.94316 0.95305 0.84222 0.96008 1.22251 0.97437 1.00225 1.01533 1.42647 1.71563 1.16251 1.07781 1.18797 1.29793 0.92995 0.93640 0.94612 1.25561 1.02749 0.98486 0.99070 1.69907 1.54360 1.23393 1.15783 0.85702 0.79405 0.78465 0.78934 1.20228 1.23555 1.14882 1.19969 0.80181 1.00724 1.01594 1.20964 1.02877 0.85987 1.05581 0.88669 0.90470 0.87617 0.89279 0.81806 0.75900 0.89623 0.90227 0.93872 0.88956 0.86574 0.95971 0.92027 0.90750 0.80213 0.94132 0.86893 0.86266 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.66 10.11 71.23 0.72 0.06 16 2 C -0.20 -4.55 6.72 24.53 0.16 -4.39 16 3 S -0.01 -0.28 22.97 -56.49 -1.30 -1.58 16 4 C 0.45 20.23 8.27 129.88 1.07 21.30 16 5 O -0.52 -29.59 17.55 -4.77 -0.08 -29.67 16 6 N -0.52 -18.48 2.09 -647.49 -1.35 -19.83 16 7 C 0.07 2.50 5.02 85.63 0.43 2.93 16 8 C 0.51 18.97 7.58 87.66 0.66 19.64 16 9 O -0.57 -24.98 16.09 -3.02 -0.05 -25.03 16 10 N -0.69 -21.79 3.80 -442.52 -1.68 -23.48 16 11 C 0.14 3.94 2.57 44.99 0.12 4.05 16 12 H 0.05 1.76 7.58 -2.38 -0.02 1.74 16 13 C -0.15 -2.86 9.48 71.98 0.68 -2.18 16 14 C -0.12 -2.87 4.43 30.60 0.14 -2.73 16 15 C 0.16 5.82 2.89 44.99 0.13 5.95 16 16 H 0.02 0.92 8.08 -2.39 -0.02 0.90 16 17 C -0.15 -4.88 9.49 71.98 0.68 -4.19 16 18 N -0.74 -32.23 3.65 -322.96 -1.18 -33.40 16 19 C -0.22 -12.92 10.41 84.03 0.87 -12.05 16 20 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 21 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 22 N -0.98 -67.90 13.97 21.65 0.30 -67.60 16 23 Si 0.95 44.01 25.13 68.60 1.72 45.73 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 25 H -0.31 -15.28 7.11 99.48 0.71 -14.58 16 26 H -0.22 -7.80 4.59 99.48 0.46 -7.35 16 27 C 0.08 2.11 6.59 40.71 0.27 2.37 16 28 C -0.10 -1.32 9.07 71.23 0.65 -0.67 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.11 0.72 6.76 -2.38 -0.02 0.70 16 32 H 0.09 3.86 4.65 -2.39 -0.01 3.85 16 33 H 0.16 3.76 6.84 -2.38 -0.02 3.75 16 34 H 0.40 11.63 5.11 -92.71 -0.47 11.15 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.36 14.14 3.78 -92.71 -0.35 13.79 16 44 H 0.25 16.73 8.31 -92.71 -0.77 15.96 16 45 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.12 0.97 6.68 -2.38 -0.02 0.96 16 47 H 0.07 1.04 6.70 -2.39 -0.02 1.02 16 Total: -1.00 -95.12 384.30 3.37 -91.75 By element: Atomic # 1 Polarization: 36.77 SS G_CDS: -0.07 Total: 36.69 kcal Atomic # 6 Polarization: 19.36 SS G_CDS: 7.06 Total: 26.41 kcal Atomic # 7 Polarization: -140.40 SS G_CDS: -3.91 Total: -144.31 kcal Atomic # 8 Polarization: -54.57 SS G_CDS: -0.13 Total: -54.70 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.72 Total: 45.73 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -1.30 Total: -1.58 kcal Total: -95.12 3.37 -91.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146584986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.030 kcal (2) G-P(sol) polarization free energy of solvation -95.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.43 seconds