Wall clock time and date at job start Sat Apr 11 2020 06:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47290 * 2 1 4 4 N 1.30258 * 125.61823 * 89.97535 * 3 2 1 5 5 C 1.34472 * 108.70247 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.16629 * 180.02562 * 5 4 3 7 7 C 1.34327 * 107.67005 * 0.02562 * 5 4 3 8 8 C 1.50701 * 126.44653 * 180.02562 * 7 5 4 9 9 N 1.46901 * 109.46947 * 89.98297 * 8 7 5 10 10 C 1.46898 * 110.99819 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47243 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.47151 * 179.97438 * 11 10 9 13 13 N 1.46503 * 109.46746 * 180.02562 * 12 11 10 14 14 C 1.34773 * 119.99718 * 180.02562 * 13 12 11 15 15 O 1.21284 * 120.00080 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99955 * 180.02562 * 14 13 12 17 17 S 1.81006 * 109.47232 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99944 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99868 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99865 * 179.97438 * 18 17 16 21 21 N 1.31632 * 119.99768 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00125 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46821 * 60.00008 * 22 20 18 24 24 H 1.48496 * 109.47225 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47240 * 300.00462 * 22 20 18 26 26 O 1.33964 * 125.62261 * 270.00512 * 3 2 1 27 27 H 1.09005 * 109.47051 * 299.99833 * 1 2 3 28 28 H 1.08995 * 109.47275 * 59.99605 * 1 2 3 29 29 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47334 * 240.00520 * 2 1 3 31 31 H 1.09003 * 109.47256 * 119.99747 * 2 1 3 32 32 H 1.08998 * 109.47177 * 269.97578 * 6 5 4 33 33 H 1.09005 * 109.46916 * 29.98023 * 6 5 4 34 34 H 1.09004 * 109.46850 * 149.97548 * 6 5 4 35 35 H 1.08999 * 109.47037 * 209.97802 * 8 7 5 36 36 H 1.09001 * 109.47192 * 329.98291 * 8 7 5 37 37 H 1.00900 * 110.99884 * 303.94768 * 9 8 7 38 38 H 1.08993 * 109.47440 * 299.99974 * 10 9 8 39 39 H 1.09006 * 109.47238 * 59.99841 * 10 9 8 40 40 H 1.08998 * 109.47271 * 300.00041 * 11 10 9 41 41 H 1.09006 * 109.46768 * 60.00001 * 11 10 9 42 42 H 1.08998 * 109.47173 * 300.00231 * 12 11 10 43 43 H 1.08993 * 109.47104 * 60.00645 * 12 11 10 44 44 H 0.97000 * 120.00219 * 0.02562 * 13 12 11 45 45 H 1.08998 * 109.47035 * 299.99774 * 16 14 13 46 46 H 1.08997 * 109.47439 * 59.99893 * 16 14 13 47 47 H 0.97000 * 119.99904 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2848 2.1362 1.0589 5 6 2.7133 3.3493 0.6676 6 6 3.1149 4.4852 1.5728 7 6 2.7188 3.3661 -0.6755 8 6 3.1269 4.5200 -1.5548 9 7 4.5652 4.4331 -1.8405 10 6 4.9999 5.5448 -2.6967 11 6 6.4999 5.4208 -2.9713 12 6 6.9525 6.5783 -3.8636 13 7 8.3888 6.4591 -4.1269 14 6 9.0112 7.3747 -4.8955 15 8 8.3822 8.2971 -5.3695 16 6 10.4885 7.2519 -5.1669 17 16 11.0240 8.6213 -6.2224 18 6 12.7373 8.2390 -6.3738 19 1 13.1418 7.3677 -5.8802 20 6 13.5670 9.0575 -7.1275 21 7 13.0740 10.1197 -7.7287 22 14 15.3836 8.6527 -7.2875 23 1 15.5392 7.3134 -7.9100 24 1 16.0454 9.6744 -8.1380 25 1 16.0103 8.6486 -5.9412 26 8 2.2923 2.1565 -1.0890 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2428 5.1017 1.7910 33 1 3.5179 4.0837 2.5027 34 1 3.8744 5.0918 1.0795 35 1 2.5677 4.4799 -2.4896 36 1 2.9139 5.4590 -1.0439 37 1 5.1023 4.4033 -0.9868 38 1 4.4538 5.5124 -3.6394 39 1 4.8000 6.4908 -2.1934 40 1 7.0458 5.4535 -2.0284 41 1 6.7002 4.4747 -3.4744 42 1 6.4066 6.5451 -4.8064 43 1 6.7523 7.5244 -3.3609 44 1 8.8917 5.7212 -3.7481 45 1 11.0349 7.2840 -4.2243 46 1 10.6880 6.3060 -5.6704 47 1 13.6538 10.6916 -8.2557 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154814112.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:43 Heat of formation + Delta-G solvation = -35.336281 kcal Electronic energy + Delta-G solvation = -25179.438445 eV Core-core repulsion = 21296.437756 eV Total energy + Delta-G solvation = -3883.000689 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.76402 -39.20568 -37.50480 -35.59073 -35.27009 -34.48487 -32.43078 -32.32722 -30.87909 -29.33257 -28.11591 -26.14104 -25.48207 -24.31412 -23.31443 -21.94766 -21.88644 -20.87900 -20.28943 -17.84026 -17.32164 -17.18680 -16.50885 -16.24746 -16.07271 -15.63946 -15.43923 -14.96146 -14.82013 -14.78867 -14.54041 -14.26391 -13.92282 -13.77122 -13.64649 -13.19346 -13.14917 -12.97739 -12.78879 -12.61220 -12.46604 -12.29416 -12.07286 -11.88155 -11.77595 -11.72674 -11.29972 -11.18613 -11.04450 -11.03459 -10.87524 -10.76606 -9.82458 -9.41789 -9.18821 -9.06232 -8.92504 -8.88280 -8.24059 -6.50016 -6.21400 -3.92126 0.96537 2.16052 2.22764 3.01586 3.09811 3.23712 3.27400 3.30430 3.46015 3.60483 3.83318 4.20085 4.20818 4.32257 4.43838 4.56527 4.58999 4.60022 4.72302 4.77635 4.84512 4.91183 5.07097 5.10424 5.13678 5.18199 5.20371 5.20917 5.23694 5.34074 5.34573 5.46963 5.51613 5.61210 5.63652 5.66376 5.83189 5.91280 5.92001 5.94515 6.14166 6.32786 6.61330 6.73585 7.33794 7.59393 7.70307 8.35182 8.61008 9.23777 10.86019 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030158 B = 0.001262 C = 0.001249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.223388 B =22188.535629 C =22411.891597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.027 4.027 3 C 0.196 3.804 4 N -0.481 5.481 5 C -0.007 4.007 6 C -0.072 4.072 7 C -0.044 4.044 8 C 0.144 3.856 9 N -0.686 5.686 10 C 0.062 3.938 11 C -0.129 4.129 12 C 0.123 3.877 13 N -0.739 5.739 14 C 0.531 3.469 15 O -0.518 6.518 16 C -0.154 4.154 17 S -0.060 6.060 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 O -0.191 6.191 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.345 0.655 38 H 0.081 0.919 39 H 0.039 0.961 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.398 0.602 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.775 -18.659 18.452 36.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.065 4.065 3 C -0.011 4.011 4 N -0.211 5.211 5 C -0.128 4.128 6 C -0.130 4.130 7 C -0.097 4.097 8 C 0.015 3.985 9 N -0.319 5.319 10 C -0.067 4.067 11 C -0.167 4.167 12 C -0.002 4.002 13 N -0.394 5.394 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 O -0.077 6.077 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.163 0.837 38 H 0.099 0.901 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.232 0.768 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -25.963 -17.596 17.566 35.948 hybrid contribution 2.219 -0.766 0.594 2.422 sum -23.744 -18.362 18.161 35.082 Atomic orbital electron populations 1.21783 0.93021 1.03079 1.02939 1.20080 0.96884 0.84212 1.05306 1.26268 0.99509 0.96712 0.78660 1.70349 1.16991 1.03430 1.30348 1.21553 1.04238 0.94871 0.92092 1.20131 1.01478 0.93137 0.98225 1.22948 1.05870 0.86591 0.94324 1.20225 0.89955 0.90222 0.98083 1.60443 1.02618 1.46688 1.22115 1.21887 0.95715 0.91292 0.97799 1.21739 0.95092 0.99435 1.00437 1.21168 0.81680 0.98033 0.99305 1.45979 1.09371 1.30031 1.54030 1.20316 0.89323 0.81329 0.77311 1.90702 1.67093 1.32104 1.49354 1.23535 0.93929 1.07313 1.05663 1.85389 1.08149 1.28806 1.61037 1.22834 0.93662 1.14708 1.37294 0.90971 1.24986 0.99408 0.94463 0.94650 1.70009 1.36186 1.13737 1.30391 0.86227 0.82734 0.78252 0.78303 1.19928 1.20796 1.19940 1.84400 1.63589 1.22252 1.37477 0.91796 0.92128 0.90769 0.88756 0.87594 0.90604 0.90289 0.91030 0.88795 0.91372 0.83660 0.90072 0.94235 0.91263 0.90193 0.91502 0.91700 0.76782 0.89224 0.89194 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.89 37.15 0.37 -0.22 16 2 C -0.03 -0.13 6.56 -27.89 -0.18 -0.31 16 3 C 0.20 1.73 7.60 -12.94 -0.10 1.63 16 4 N -0.48 -4.94 11.29 -7.36 -0.08 -5.02 16 5 C -0.01 -0.06 7.11 -82.82 -0.59 -0.65 16 6 C -0.07 -0.43 10.05 36.01 0.36 -0.07 16 7 C -0.04 -0.38 6.90 -35.69 -0.25 -0.63 16 8 C 0.14 0.93 5.84 -4.97 -0.03 0.90 16 9 N -0.69 -4.68 6.49 -115.06 -0.75 -5.42 16 10 C 0.06 0.40 5.68 -3.82 -0.02 0.38 16 11 C -0.13 -0.95 5.59 -26.73 -0.15 -1.10 16 12 C 0.12 1.33 5.67 -4.04 -0.02 1.30 16 13 N -0.74 -9.60 5.56 -60.29 -0.33 -9.94 16 14 C 0.53 9.88 7.85 -10.99 -0.09 9.79 16 15 O -0.52 -11.78 15.86 5.55 0.09 -11.69 16 16 C -0.15 -3.10 6.16 36.01 0.22 -2.87 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 18 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 22 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 O -0.19 -1.88 10.78 5.36 0.06 -1.82 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.31 7.79 -51.93 -0.40 -0.09 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.33 7.80 -51.93 -0.40 -0.08 16 37 H 0.35 2.15 8.72 -39.29 -0.34 1.80 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.40 4.00 8.47 -40.82 -0.35 3.66 16 45 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 46 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 47 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 413.70 15.07 6.23 6.23 Total: -1.00 -36.89 413.70 -9.37 -46.26 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.81 Total: -0.78 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -0.28 Total: -4.85 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -0.43 Total: -45.85 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.15 Total: -13.51 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.89 -9.37 -46.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154814112.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.921 kcal (2) G-P(sol) polarization free energy of solvation -36.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds