Wall clock time and date at job start Sat Apr 11 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47290 * 2 1 4 4 N 1.30258 * 125.61823 * 89.97535 * 3 2 1 5 5 C 1.34472 * 108.70247 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.16629 * 180.02562 * 5 4 3 7 7 C 1.34327 * 107.67005 * 0.02562 * 5 4 3 8 8 C 1.50701 * 126.44653 * 180.02562 * 7 5 4 9 9 N 1.46901 * 109.46947 * 89.98297 * 8 7 5 10 10 C 1.46898 * 110.99819 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47243 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.47151 * 179.97438 * 11 10 9 13 13 N 1.46503 * 109.46746 * 180.02562 * 12 11 10 14 14 C 1.34773 * 119.99718 * 180.02562 * 13 12 11 15 15 O 1.21284 * 120.00080 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99955 * 180.02562 * 14 13 12 17 17 S 1.81006 * 109.47232 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99944 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99868 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99865 * 179.97438 * 18 17 16 21 21 N 1.31632 * 119.99768 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00125 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46821 * 60.00008 * 22 20 18 24 24 H 1.48496 * 109.47225 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47240 * 300.00462 * 22 20 18 26 26 O 1.33964 * 125.62261 * 270.00512 * 3 2 1 27 27 H 1.09005 * 109.47051 * 299.99833 * 1 2 3 28 28 H 1.08995 * 109.47275 * 59.99605 * 1 2 3 29 29 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47334 * 240.00520 * 2 1 3 31 31 H 1.09003 * 109.47256 * 119.99747 * 2 1 3 32 32 H 1.08998 * 109.47177 * 269.97578 * 6 5 4 33 33 H 1.09005 * 109.46916 * 29.98023 * 6 5 4 34 34 H 1.09004 * 109.46850 * 149.97548 * 6 5 4 35 35 H 1.08999 * 109.47037 * 209.97802 * 8 7 5 36 36 H 1.09001 * 109.47192 * 329.98291 * 8 7 5 37 37 H 1.00900 * 110.99884 * 303.94768 * 9 8 7 38 38 H 1.08993 * 109.47440 * 299.99974 * 10 9 8 39 39 H 1.09006 * 109.47238 * 59.99841 * 10 9 8 40 40 H 1.08998 * 109.47271 * 300.00041 * 11 10 9 41 41 H 1.09006 * 109.46768 * 60.00001 * 11 10 9 42 42 H 1.08998 * 109.47173 * 300.00231 * 12 11 10 43 43 H 1.08993 * 109.47104 * 60.00645 * 12 11 10 44 44 H 0.97000 * 120.00219 * 0.02562 * 13 12 11 45 45 H 1.08998 * 109.47035 * 299.99774 * 16 14 13 46 46 H 1.08997 * 109.47439 * 59.99893 * 16 14 13 47 47 H 0.97000 * 119.99904 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2848 2.1362 1.0589 5 6 2.7133 3.3493 0.6676 6 6 3.1149 4.4852 1.5728 7 6 2.7188 3.3661 -0.6755 8 6 3.1269 4.5200 -1.5548 9 7 4.5652 4.4331 -1.8405 10 6 4.9999 5.5448 -2.6967 11 6 6.4999 5.4208 -2.9713 12 6 6.9525 6.5783 -3.8636 13 7 8.3888 6.4591 -4.1269 14 6 9.0112 7.3747 -4.8955 15 8 8.3822 8.2971 -5.3695 16 6 10.4885 7.2519 -5.1669 17 16 11.0240 8.6213 -6.2224 18 6 12.7373 8.2390 -6.3738 19 1 13.1418 7.3677 -5.8802 20 6 13.5670 9.0575 -7.1275 21 7 13.0740 10.1197 -7.7287 22 14 15.3836 8.6527 -7.2875 23 1 15.5392 7.3134 -7.9100 24 1 16.0454 9.6744 -8.1380 25 1 16.0103 8.6486 -5.9412 26 8 2.2923 2.1565 -1.0890 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2428 5.1017 1.7910 33 1 3.5179 4.0837 2.5027 34 1 3.8744 5.0918 1.0795 35 1 2.5677 4.4799 -2.4896 36 1 2.9139 5.4590 -1.0439 37 1 5.1023 4.4033 -0.9868 38 1 4.4538 5.5124 -3.6394 39 1 4.8000 6.4908 -2.1934 40 1 7.0458 5.4535 -2.0284 41 1 6.7002 4.4747 -3.4744 42 1 6.4066 6.5451 -4.8064 43 1 6.7523 7.5244 -3.3609 44 1 8.8917 5.7212 -3.7481 45 1 11.0349 7.2840 -4.2243 46 1 10.6880 6.3060 -5.6704 47 1 13.6538 10.6916 -8.2557 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154814112.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:42 Heat of formation + Delta-G solvation = -64.486329 kcal Electronic energy + Delta-G solvation = -25180.702486 eV Core-core repulsion = 21296.437756 eV Total energy + Delta-G solvation = -3884.264730 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.39104 -40.60147 -38.13084 -36.31230 -36.12373 -35.07272 -34.57883 -33.15481 -31.66298 -30.49736 -28.84507 -27.67022 -26.68110 -25.00950 -23.86215 -22.59839 -22.52613 -21.68547 -21.43891 -19.81192 -17.98477 -17.86507 -17.65502 -17.25430 -17.11538 -16.87112 -16.57559 -16.04582 -15.82002 -15.79387 -15.38758 -15.06444 -14.94137 -14.65824 -14.41805 -14.23228 -14.16194 -13.83903 -13.57967 -13.42439 -13.16644 -13.16478 -13.00261 -12.85986 -12.83797 -12.62863 -12.56868 -12.46427 -12.08646 -11.91999 -11.87495 -11.73820 -11.52829 -11.12319 -10.96126 -10.27644 -10.10585 -9.72661 -9.45002 -8.66345 -8.34015 -6.12323 0.35070 1.27656 1.44531 1.47493 1.55010 1.57838 1.62045 1.66313 2.26614 2.30680 2.96562 3.00167 3.16406 3.33502 3.68520 3.79632 3.94010 3.97541 4.02615 4.16777 4.19195 4.21944 4.22565 4.31112 4.34215 4.47101 4.52095 4.55594 4.66037 4.68392 4.68979 4.75971 4.78820 4.92796 4.95188 5.07334 5.09520 5.16129 5.18761 5.25514 5.39081 5.42085 5.46662 5.83295 6.20137 6.27080 6.52178 6.71244 7.07217 7.25659 8.75040 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030158 B = 0.001262 C = 0.001249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.223388 B =22188.535629 C =22411.891597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.028 4.028 3 C 0.190 3.810 4 N -0.512 5.512 5 C -0.020 4.020 6 C -0.071 4.071 7 C -0.055 4.055 8 C 0.148 3.852 9 N -0.694 5.694 10 C 0.066 3.934 11 C -0.114 4.114 12 C 0.122 3.878 13 N -0.713 5.713 14 C 0.532 3.468 15 O -0.567 6.567 16 C -0.130 4.130 17 S -0.152 6.152 18 C -0.549 4.549 19 H 0.083 0.917 20 C 0.015 3.985 21 N -0.912 5.912 22 Si 0.998 3.002 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.262 1.262 26 O -0.208 6.208 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.349 0.651 38 H 0.078 0.922 39 H 0.050 0.950 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.417 0.583 45 H 0.110 0.890 46 H 0.109 0.891 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.234 -20.579 19.735 37.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.066 4.066 3 C -0.017 4.017 4 N -0.243 5.243 5 C -0.141 4.141 6 C -0.128 4.128 7 C -0.108 4.108 8 C 0.019 3.981 9 N -0.326 5.326 10 C -0.063 4.063 11 C -0.152 4.152 12 C -0.002 4.002 13 N -0.367 5.367 14 C 0.318 3.682 15 O -0.446 6.446 16 C -0.282 4.282 17 S 0.075 5.925 18 C -0.696 4.696 19 H 0.101 0.899 20 C -0.190 4.190 21 N -0.548 5.548 22 Si 0.819 3.181 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.186 1.186 26 O -0.095 6.095 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.168 0.832 38 H 0.096 0.904 39 H 0.068 0.932 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.254 0.746 45 H 0.129 0.871 46 H 0.128 0.872 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -25.436 -19.568 18.895 37.241 hybrid contribution 1.926 -0.262 0.278 1.963 sum -23.511 -19.829 19.174 36.243 Atomic orbital electron populations 1.21755 0.92271 1.04231 1.02035 1.20319 0.97411 0.82343 1.06482 1.27066 0.98691 0.97735 0.78232 1.70363 1.18228 1.04423 1.31237 1.22035 1.04060 0.95194 0.92778 1.20223 1.02311 0.92515 0.97737 1.23352 1.06004 0.86745 0.94703 1.20285 0.89676 0.90144 0.97976 1.60382 1.02888 1.46878 1.22485 1.21813 0.94887 0.91725 0.97851 1.21596 0.95819 0.97612 1.00157 1.21315 0.79820 0.99480 0.99624 1.45745 1.10429 1.28803 1.51745 1.20070 0.88639 0.81702 0.77823 1.90691 1.67737 1.34401 1.51743 1.23384 0.95344 1.04517 1.04926 1.85567 1.09309 1.33800 1.63854 1.23187 0.93788 1.15140 1.37519 0.89890 1.26117 1.04879 0.94057 0.93950 1.70178 1.38205 1.15067 1.31349 0.85013 0.75862 0.78375 0.78805 1.18666 1.20387 1.18636 1.84399 1.63992 1.22940 1.38138 0.92927 0.92748 0.88559 0.87253 0.86653 0.89740 0.90619 0.89252 0.88866 0.89427 0.83194 0.90374 0.93203 0.89829 0.90136 0.92447 0.92137 0.74628 0.87133 0.87230 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.89 71.98 0.71 -0.30 16 2 C -0.03 -0.25 6.56 29.85 0.20 -0.05 16 3 C 0.19 3.31 7.60 88.34 0.67 3.98 16 4 N -0.51 -10.45 11.29 -291.98 -3.30 -13.74 16 5 C -0.02 -0.35 7.11 41.26 0.29 -0.06 16 6 C -0.07 -0.75 10.05 71.24 0.72 -0.04 16 7 C -0.06 -0.92 6.90 24.79 0.17 -0.75 16 8 C 0.15 1.68 5.84 85.56 0.50 2.18 16 9 N -0.69 -8.02 6.49 -517.93 -3.36 -11.38 16 10 C 0.07 0.71 5.68 86.30 0.49 1.20 16 11 C -0.11 -1.37 5.59 30.60 0.17 -1.20 16 12 C 0.12 2.41 5.67 86.38 0.49 2.90 16 13 N -0.71 -16.99 5.56 -463.06 -2.57 -19.56 16 14 C 0.53 19.31 7.85 87.66 0.69 20.00 16 15 O -0.57 -26.12 15.86 -3.04 -0.05 -26.16 16 16 C -0.13 -5.11 6.16 71.24 0.44 -4.67 16 17 S -0.15 -8.46 20.57 -56.49 -1.16 -9.63 16 18 C -0.55 -31.30 9.50 67.95 0.65 -30.65 16 19 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 20 C 0.01 0.84 5.49 84.86 0.47 1.31 16 21 N -0.91 -56.02 13.22 21.65 0.29 -55.74 16 22 Si 1.00 43.40 29.55 68.60 2.03 45.42 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 24 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 26 O -0.21 -4.04 10.78 -3.73 -0.04 -4.08 16 27 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.09 0.59 7.79 -2.38 -0.02 0.57 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 0.64 7.80 -2.39 -0.02 0.62 16 37 H 0.35 3.53 8.72 -89.69 -0.78 2.74 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.42 7.02 8.47 -92.71 -0.79 6.23 16 45 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 46 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 47 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -82.52 413.70 -2.11 -84.63 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -0.59 Total: 16.39 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 6.65 Total: -6.16 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -8.95 Total: -100.42 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.09 Total: -30.24 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.63 kcal Total: -82.52 -2.11 -84.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154814112.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.148 kcal (2) G-P(sol) polarization free energy of solvation -82.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds