Wall clock time and date at job start Sat Apr 11 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47586 * 2 1 4 4 C 1.52995 * 109.47383 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47196 * 180.02562 * 4 3 2 6 6 C 1.36904 * 120.00235 * 264.51240 * 5 4 3 7 7 H 1.08005 * 120.00134 * 145.00440 * 6 5 4 8 8 C 1.38824 * 119.99989 * 324.99935 * 6 5 4 9 9 N 1.31568 * 119.99693 * 338.53338 * 8 6 5 10 10 Si 1.86798 * 119.99861 * 158.53381 * 8 6 5 11 11 H 1.48497 * 109.47094 * 90.00647 * 10 8 6 12 12 H 1.48504 * 109.46869 * 210.00137 * 10 8 6 13 13 H 1.48496 * 109.47387 * 329.99929 * 10 8 6 14 14 C 1.38844 * 119.99743 * 84.50868 * 5 4 3 15 15 C 1.39227 * 119.71264 * 184.99845 * 14 5 4 16 16 C 1.38308 * 119.09300 * 179.97438 * 15 14 5 17 17 C 1.38877 * 118.50617 * 0.02562 * 16 15 14 18 18 S 1.76198 * 120.33176 * 180.02562 * 17 16 15 19 19 O 1.42098 * 106.40550 * 203.53910 * 18 17 16 20 20 O 1.42103 * 106.40213 * 336.46164 * 18 17 16 21 21 N 1.65599 * 107.21712 * 90.00084 * 18 17 16 22 22 C 1.46498 * 120.00046 * 65.00005 * 21 18 17 23 23 C 1.53010 * 109.46814 * 144.99971 * 22 21 18 24 24 C 1.53000 * 109.47150 * 264.99669 * 22 21 18 25 25 C 1.38130 * 119.33876 * 359.97438 * 17 16 15 26 26 N 1.31891 * 120.86676 * 0.02562 * 25 17 16 27 27 H 1.09000 * 109.47391 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46782 * 299.99540 * 1 2 3 29 29 H 1.08996 * 109.47182 * 59.99622 * 1 2 3 30 30 H 1.09000 * 109.46835 * 239.99918 * 2 1 3 31 31 H 1.09005 * 109.47444 * 120.00874 * 2 1 3 32 32 H 1.09002 * 109.46685 * 60.00401 * 3 2 1 33 33 H 1.08996 * 109.47235 * 300.00938 * 3 2 1 34 34 H 1.09002 * 109.47061 * 60.00413 * 4 3 2 35 35 H 1.09005 * 109.46950 * 300.00366 * 4 3 2 36 36 H 0.96999 * 119.99455 * 180.02562 * 9 8 6 37 37 H 1.08002 * 120.45141 * 0.25880 * 15 14 5 38 38 H 1.07996 * 120.74697 * 180.02562 * 16 15 14 39 39 H 0.97003 * 119.99751 * 245.00099 * 21 18 17 40 40 H 1.08994 * 109.46999 * 25.00278 * 22 21 18 41 41 H 1.08994 * 109.47087 * 60.00361 * 23 22 21 42 42 H 1.08995 * 109.46636 * 179.97438 * 23 22 21 43 43 H 1.08995 * 109.47260 * 300.00135 * 23 22 21 44 44 H 1.09001 * 109.46905 * 179.97438 * 24 22 21 45 45 H 1.08995 * 109.47171 * 300.00376 * 24 22 21 46 46 H 1.09000 * 109.46825 * 60.00508 * 24 22 21 47 47 H 1.08002 * 119.56312 * 179.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.3931 3.4318 -1.1800 7 1 4.2085 4.4874 -1.3147 8 6 4.9698 2.6919 -2.2032 9 7 5.5770 1.5566 -1.9324 10 14 4.8837 3.3082 -3.9645 11 1 6.0665 4.1596 -4.2494 12 1 4.8719 2.1502 -4.8941 13 1 3.6442 4.1046 -4.1503 14 6 4.1819 3.5156 1.1973 15 6 4.5463 4.8593 1.1832 16 6 4.6649 5.5365 2.3833 17 6 4.4151 4.8454 3.5618 18 16 4.5515 5.6612 5.1176 19 8 4.7904 4.6464 6.0832 20 8 5.4245 6.7643 4.9172 21 7 3.0643 6.2995 5.4684 22 6 1.9221 5.4117 5.6995 23 6 1.0117 6.0197 6.7685 24 6 1.1367 5.2416 4.3975 25 6 4.0576 3.5126 3.5020 26 7 3.9519 2.8916 2.3432 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5140 0.8899 32 1 1.6768 1.9562 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 3.9330 0.9287 -0.8909 35 1 3.9337 0.9283 0.8891 36 1 5.9803 1.0398 -2.6474 37 1 4.7292 5.3671 0.2477 38 1 4.9456 6.5791 2.4036 39 1 2.9494 7.2613 5.5208 40 1 2.2803 4.4394 6.0375 41 1 0.6536 6.9920 6.4305 42 1 0.1617 5.3594 6.9401 43 1 1.5712 6.1410 7.6960 44 1 0.2872 4.5807 4.5694 45 1 0.7786 6.2140 4.0596 46 1 1.7853 4.8085 3.6360 47 1 3.8629 2.9716 4.4163 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:01 Heat of formation + Delta-G solvation = -51.793760 kcal Electronic energy + Delta-G solvation = -28620.842445 eV Core-core repulsion = 24737.128106 eV Total energy + Delta-G solvation = -3883.714339 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.33430 -37.03788 -36.69470 -36.45792 -35.37203 -34.30423 -32.43963 -31.47140 -30.42604 -29.74546 -28.12090 -27.16276 -25.30696 -23.47184 -22.54148 -21.43045 -21.19325 -20.40125 -19.26493 -17.91993 -17.53431 -16.94068 -16.26072 -15.85960 -15.47662 -15.04941 -14.88502 -14.44480 -14.23352 -13.95545 -13.81386 -13.49852 -13.39373 -13.17917 -12.72525 -12.68212 -12.46110 -12.26988 -12.19455 -12.04585 -11.76350 -11.68151 -11.65739 -11.56465 -11.47934 -11.35158 -11.32953 -10.92183 -10.82836 -10.64796 -10.59273 -10.55171 -10.28446 -10.04093 -9.70804 -9.40839 -9.18912 -8.74507 -8.48577 -7.21283 -6.70292 -4.29073 0.97827 1.80755 2.30409 2.94130 3.00702 3.04586 3.47608 3.74958 4.19861 4.39341 4.47674 4.77966 4.80413 4.87590 5.05864 5.15734 5.29483 5.34581 5.42654 5.48136 5.51269 5.57444 5.62362 5.74669 5.82019 5.89452 5.98537 6.09629 6.10630 6.11797 6.21092 6.25412 6.29440 6.34444 6.39746 6.50697 6.59066 6.64126 6.74662 6.79584 6.91666 7.05439 7.15390 7.18649 7.45450 7.77412 8.16015 8.70578 8.85881 9.39380 10.20705 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012176 B = 0.003662 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.997562 B = 7644.916013 C = 9022.698350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.126 4.126 4 C 0.110 3.890 5 N -0.382 5.382 6 C -0.324 4.324 7 H 0.100 0.900 8 C 0.044 3.956 9 N -0.841 5.841 10 Si 0.926 3.074 11 H -0.272 1.272 12 H -0.277 1.277 13 H -0.265 1.265 14 C 0.386 3.614 15 C -0.252 4.252 16 C 0.044 3.956 17 C -0.844 4.844 18 S 2.707 3.293 19 O -0.978 6.978 20 O -0.980 6.980 21 N -1.120 6.120 22 C 0.145 3.855 23 C -0.155 4.155 24 C -0.175 4.175 25 C 0.253 3.747 26 N -0.567 5.567 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.107 0.893 35 H 0.066 0.934 36 H 0.277 0.723 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.411 0.589 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.877 3.602 7.266 12.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.165 4.165 4 C -0.013 4.013 5 N -0.064 5.064 6 C -0.452 4.452 7 H 0.118 0.882 8 C -0.165 4.165 9 N -0.473 5.473 10 Si 0.751 3.249 11 H -0.197 1.197 12 H -0.202 1.202 13 H -0.189 1.189 14 C 0.143 3.857 15 C -0.279 4.279 16 C 0.018 3.982 17 C -0.946 4.946 18 S 2.801 3.199 19 O -0.968 6.968 20 O -0.971 6.971 21 N -0.877 5.877 22 C 0.038 3.962 23 C -0.214 4.214 24 C -0.234 4.234 25 C 0.081 3.919 26 N -0.286 5.286 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.125 0.875 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.244 0.756 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.246 2.211 7.191 11.920 hybrid contribution -0.121 1.291 -1.530 2.006 sum -9.367 3.502 5.661 11.492 Atomic orbital electron populations 1.21749 0.96456 1.00837 1.01493 1.21410 0.95119 0.97341 1.01773 1.21904 0.97152 0.95933 1.01500 1.21692 0.91582 0.83592 1.04435 1.42863 1.50229 1.11420 1.01840 1.19600 1.40079 0.96500 0.89054 0.88237 1.25519 0.93594 0.96202 1.01200 1.70002 1.28593 1.14469 1.34206 0.85934 0.79462 0.78848 0.80669 1.19695 1.20234 1.18884 1.18893 0.90876 0.89752 0.86136 1.21192 1.13163 0.94987 0.98514 1.20521 0.89017 0.97895 0.90720 1.30221 1.36809 1.08423 1.19130 1.01013 0.71841 0.73036 0.74036 1.93511 1.83809 1.59741 1.59781 1.93515 1.62648 1.53627 1.87279 1.55797 1.27047 1.16683 1.88176 1.20713 0.86566 0.93567 0.95357 1.22051 0.99428 1.01327 0.98575 1.22381 1.00781 1.02304 0.97945 1.21725 0.86278 0.88843 0.95072 1.67237 1.25721 1.38328 0.97309 0.93274 0.93013 0.93083 0.92274 0.92129 0.92578 0.92441 0.87501 0.91594 0.91213 0.85311 0.85758 0.75596 0.89098 0.92231 0.91408 0.91993 0.91806 0.92275 0.91219 0.83608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.51 16 2 C -0.12 -1.79 5.93 -26.73 -0.16 -1.94 16 3 C -0.13 -2.30 5.51 -26.73 -0.15 -2.45 16 4 C 0.11 2.38 4.94 -4.05 -0.02 2.36 16 5 N -0.38 -8.93 2.65 -115.04 -0.30 -9.23 16 6 C -0.32 -7.69 8.66 -15.07 -0.13 -7.83 16 7 H 0.10 2.28 6.53 -52.48 -0.34 1.94 16 8 C 0.04 1.03 4.93 -17.45 -0.09 0.94 16 9 N -0.84 -20.60 11.37 55.49 0.63 -19.97 16 10 Si 0.93 18.02 29.60 -169.99 -5.03 12.99 16 11 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 12 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 13 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 14 C 0.39 8.76 7.31 -155.06 -1.13 7.62 16 15 C -0.25 -5.31 9.31 -39.19 -0.36 -5.68 16 16 C 0.04 0.84 9.64 -39.32 -0.38 0.46 16 17 C -0.84 -15.14 5.08 -39.38 -0.20 -15.34 16 18 S 2.71 42.97 5.73 -107.50 -0.62 42.35 16 19 O -0.98 -17.61 16.64 -57.17 -0.95 -18.56 16 20 O -0.98 -17.94 17.35 -57.17 -0.99 -18.93 16 21 N -1.12 -13.20 5.47 -4.89 -0.03 -13.22 16 22 C 0.15 1.55 3.52 -67.93 -0.24 1.31 16 23 C -0.15 -1.27 9.44 37.16 0.35 -0.92 16 24 C -0.18 -1.93 9.52 37.16 0.35 -1.58 16 25 C 0.25 4.77 9.73 -17.57 -0.17 4.60 16 26 N -0.57 -12.15 9.17 -12.42 -0.11 -12.26 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.11 2.47 5.40 -51.93 -0.28 2.19 16 35 H 0.07 1.47 7.47 -51.93 -0.39 1.08 16 36 H 0.28 6.36 8.31 -40.82 -0.34 6.02 16 37 H 0.13 2.66 6.30 -52.49 -0.33 2.33 16 38 H 0.12 2.07 7.70 -52.49 -0.40 1.66 16 39 H 0.41 3.94 8.84 -34.47 -0.30 3.63 16 40 H 0.09 1.02 7.50 -51.93 -0.39 0.63 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.95 6.16 -51.93 -0.32 0.63 16 47 H 0.15 2.41 7.62 -52.49 -0.40 2.01 16 LS Contribution 392.27 15.07 5.91 5.91 Total: -1.00 -29.17 392.27 -10.82 -39.99 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -7.37 Total: 10.88 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -1.96 Total: -19.95 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.19 Total: -54.68 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -1.94 Total: -37.50 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Atomic # 16 Polarization: 42.97 SS G_CDS: -0.62 Total: 42.35 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.17 -10.82 -39.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.801 kcal (2) G-P(sol) polarization free energy of solvation -29.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds