Wall clock time and date at job start Sat Apr 11 2020 06:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47586 * 2 1 4 4 C 1.52995 * 109.47383 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47196 * 180.02562 * 4 3 2 6 6 C 1.36904 * 120.00235 * 264.51240 * 5 4 3 7 7 H 1.08005 * 120.00134 * 145.00440 * 6 5 4 8 8 C 1.38824 * 119.99989 * 324.99935 * 6 5 4 9 9 N 1.31568 * 119.99693 * 338.53338 * 8 6 5 10 10 Si 1.86798 * 119.99861 * 158.53381 * 8 6 5 11 11 H 1.48497 * 109.47094 * 90.00647 * 10 8 6 12 12 H 1.48504 * 109.46869 * 210.00137 * 10 8 6 13 13 H 1.48496 * 109.47387 * 329.99929 * 10 8 6 14 14 C 1.38844 * 119.99743 * 84.50868 * 5 4 3 15 15 C 1.39227 * 119.71264 * 184.99845 * 14 5 4 16 16 C 1.38308 * 119.09300 * 179.97438 * 15 14 5 17 17 C 1.38877 * 118.50617 * 0.02562 * 16 15 14 18 18 S 1.76198 * 120.33176 * 180.02562 * 17 16 15 19 19 O 1.42098 * 106.40550 * 203.53910 * 18 17 16 20 20 O 1.42103 * 106.40213 * 336.46164 * 18 17 16 21 21 N 1.65599 * 107.21712 * 90.00084 * 18 17 16 22 22 C 1.46498 * 120.00046 * 65.00005 * 21 18 17 23 23 C 1.53010 * 109.46814 * 144.99971 * 22 21 18 24 24 C 1.53000 * 109.47150 * 264.99669 * 22 21 18 25 25 C 1.38130 * 119.33876 * 359.97438 * 17 16 15 26 26 N 1.31891 * 120.86676 * 0.02562 * 25 17 16 27 27 H 1.09000 * 109.47391 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46782 * 299.99540 * 1 2 3 29 29 H 1.08996 * 109.47182 * 59.99622 * 1 2 3 30 30 H 1.09000 * 109.46835 * 239.99918 * 2 1 3 31 31 H 1.09005 * 109.47444 * 120.00874 * 2 1 3 32 32 H 1.09002 * 109.46685 * 60.00401 * 3 2 1 33 33 H 1.08996 * 109.47235 * 300.00938 * 3 2 1 34 34 H 1.09002 * 109.47061 * 60.00413 * 4 3 2 35 35 H 1.09005 * 109.46950 * 300.00366 * 4 3 2 36 36 H 0.96999 * 119.99455 * 180.02562 * 9 8 6 37 37 H 1.08002 * 120.45141 * 0.25880 * 15 14 5 38 38 H 1.07996 * 120.74697 * 180.02562 * 16 15 14 39 39 H 0.97003 * 119.99751 * 245.00099 * 21 18 17 40 40 H 1.08994 * 109.46999 * 25.00278 * 22 21 18 41 41 H 1.08994 * 109.47087 * 60.00361 * 23 22 21 42 42 H 1.08995 * 109.46636 * 179.97438 * 23 22 21 43 43 H 1.08995 * 109.47260 * 300.00135 * 23 22 21 44 44 H 1.09001 * 109.46905 * 179.97438 * 24 22 21 45 45 H 1.08995 * 109.47171 * 300.00376 * 24 22 21 46 46 H 1.09000 * 109.46825 * 60.00508 * 24 22 21 47 47 H 1.08002 * 119.56312 * 179.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.3931 3.4318 -1.1800 7 1 4.2085 4.4874 -1.3147 8 6 4.9698 2.6919 -2.2032 9 7 5.5770 1.5566 -1.9324 10 14 4.8837 3.3082 -3.9645 11 1 6.0665 4.1596 -4.2494 12 1 4.8719 2.1502 -4.8941 13 1 3.6442 4.1046 -4.1503 14 6 4.1819 3.5156 1.1973 15 6 4.5463 4.8593 1.1832 16 6 4.6649 5.5365 2.3833 17 6 4.4151 4.8454 3.5618 18 16 4.5515 5.6612 5.1176 19 8 4.7904 4.6464 6.0832 20 8 5.4245 6.7643 4.9172 21 7 3.0643 6.2995 5.4684 22 6 1.9221 5.4117 5.6995 23 6 1.0117 6.0197 6.7685 24 6 1.1367 5.2416 4.3975 25 6 4.0576 3.5126 3.5020 26 7 3.9519 2.8916 2.3432 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5140 0.8899 32 1 1.6768 1.9562 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 3.9330 0.9287 -0.8909 35 1 3.9337 0.9283 0.8891 36 1 5.9803 1.0398 -2.6474 37 1 4.7292 5.3671 0.2477 38 1 4.9456 6.5791 2.4036 39 1 2.9494 7.2613 5.5208 40 1 2.2803 4.4394 6.0375 41 1 0.6536 6.9920 6.4305 42 1 0.1617 5.3594 6.9401 43 1 1.5712 6.1410 7.6960 44 1 0.2872 4.5807 4.5694 45 1 0.7786 6.2140 4.0596 46 1 1.7853 4.8085 3.6360 47 1 3.8629 2.9716 4.4163 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167129271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:00 Heat of formation + Delta-G solvation = -69.373942 kcal Electronic energy + Delta-G solvation = -28621.604779 eV Core-core repulsion = 24737.128106 eV Total energy + Delta-G solvation = -3884.476673 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.97385 -38.37732 -38.22706 -37.54483 -36.79800 -35.68882 -34.12942 -33.10435 -31.40444 -31.23799 -29.63047 -27.94177 -26.95661 -24.96971 -24.12529 -22.69654 -22.30359 -21.87590 -20.53813 -19.56716 -18.93874 -18.36304 -17.77239 -17.34279 -16.75918 -16.66015 -16.23546 -15.72834 -15.49575 -15.37744 -15.15784 -15.09538 -14.52054 -14.37129 -14.12995 -13.96924 -13.68935 -13.68309 -13.54449 -13.20527 -13.18874 -13.11028 -13.00095 -12.96750 -12.91352 -12.41332 -12.31448 -12.24102 -12.09381 -12.04448 -11.91724 -11.84660 -11.71764 -11.52801 -11.28267 -10.84665 -10.50129 -10.40298 -10.08344 -8.91789 -8.40967 -6.09314 -0.35791 0.23141 0.68551 1.38885 1.41333 1.52757 2.12967 2.25694 2.68945 2.78165 2.91034 3.18733 3.53439 3.75578 3.97288 4.06037 4.09805 4.14600 4.23789 4.28437 4.33150 4.45915 4.50439 4.59939 4.65936 4.82857 4.83898 4.87387 4.94729 4.97986 4.98674 5.01906 5.06879 5.14591 5.16469 5.20708 5.31504 5.33431 5.36227 5.40077 5.45134 5.47455 5.52708 5.83099 6.07555 6.26032 6.45738 7.02240 7.15277 7.70672 8.49669 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012176 B = 0.003662 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.997562 B = 7644.916013 C = 9022.698350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.112 4.112 4 C 0.118 3.882 5 N -0.407 5.407 6 C -0.343 4.343 7 H 0.098 0.902 8 C 0.006 3.994 9 N -0.879 5.879 10 Si 0.990 3.010 11 H -0.271 1.271 12 H -0.275 1.275 13 H -0.259 1.259 14 C 0.373 3.627 15 C -0.275 4.275 16 C 0.052 3.948 17 C -0.837 4.837 18 S 2.735 3.265 19 O -0.994 6.994 20 O -1.000 7.000 21 N -1.103 6.103 22 C 0.138 3.862 23 C -0.151 4.151 24 C -0.174 4.174 25 C 0.246 3.754 26 N -0.583 5.583 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.278 0.722 37 H 0.126 0.874 38 H 0.149 0.851 39 H 0.425 0.575 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.039 0.961 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.575 4.829 8.698 15.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.150 4.150 4 C -0.005 4.005 5 N -0.091 5.091 6 C -0.472 4.472 7 H 0.116 0.884 8 C -0.199 4.199 9 N -0.513 5.513 10 Si 0.812 3.188 11 H -0.197 1.197 12 H -0.199 1.199 13 H -0.183 1.183 14 C 0.132 3.868 15 C -0.302 4.302 16 C 0.026 3.974 17 C -0.935 4.935 18 S 2.827 3.173 19 O -0.984 6.984 20 O -0.990 6.990 21 N -0.865 5.865 22 C 0.031 3.969 23 C -0.210 4.210 24 C -0.233 4.233 25 C 0.076 3.924 26 N -0.303 5.303 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.144 0.856 38 H 0.167 0.833 39 H 0.262 0.738 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.058 0.942 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.950 3.452 8.643 14.371 hybrid contribution 0.392 1.038 -1.651 1.989 sum -10.558 4.490 6.991 13.436 Atomic orbital electron populations 1.21702 0.94151 1.02330 1.01757 1.21391 0.97070 0.94979 1.01800 1.21762 0.94873 0.97915 1.00474 1.21573 0.93470 0.83012 1.02474 1.42977 1.52277 1.11937 1.01958 1.19793 1.40762 0.96780 0.89822 0.88422 1.26299 0.92927 0.96281 1.04432 1.70094 1.30153 1.15863 1.35152 0.84984 0.79374 0.78245 0.76179 1.19676 1.19948 1.18276 1.19244 0.90662 0.90352 0.86528 1.21311 1.14596 0.94840 0.99467 1.20845 0.87426 0.98953 0.90146 1.30714 1.34121 1.08302 1.20352 1.00197 0.72260 0.72150 0.72727 1.93495 1.84593 1.60694 1.59652 1.93490 1.64275 1.53973 1.87245 1.55410 1.26064 1.17742 1.87269 1.20939 0.86334 0.93460 0.96132 1.22037 0.99276 1.02153 0.97512 1.22363 1.00765 1.02948 0.97176 1.22180 0.85583 0.89538 0.95092 1.67262 1.26379 1.38996 0.97709 0.91159 0.92677 0.92901 0.92414 0.91959 0.93370 0.93401 0.89359 0.93323 0.91194 0.85579 0.83331 0.73829 0.89532 0.90978 0.89837 0.91729 0.90299 0.91372 0.94152 0.81334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.91 71.98 0.71 -2.70 16 2 C -0.11 -3.45 5.93 30.59 0.18 -3.27 16 3 C -0.11 -4.21 5.51 30.59 0.17 -4.04 16 4 C 0.12 5.37 4.94 86.38 0.43 5.79 16 5 N -0.41 -19.89 2.65 -517.89 -1.37 -21.26 16 6 C -0.34 -16.99 8.66 84.04 0.73 -16.26 16 7 H 0.10 4.68 6.53 -2.91 -0.02 4.66 16 8 C 0.01 0.28 4.93 84.87 0.42 0.70 16 9 N -0.88 -44.93 11.37 21.65 0.25 -44.68 16 10 Si 0.99 37.82 29.60 68.60 2.03 39.85 16 11 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 12 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 13 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 14 C 0.37 17.48 7.31 133.11 0.97 18.45 16 15 C -0.28 -11.84 9.31 22.52 0.21 -11.63 16 16 C 0.05 1.92 9.64 22.44 0.22 2.14 16 17 C -0.84 -29.09 5.08 22.40 0.11 -28.98 16 18 S 2.74 81.16 5.73 -56.49 -0.32 80.84 16 19 O -0.99 -33.75 16.64 -128.00 -2.13 -35.88 16 20 O -1.00 -34.36 17.35 -128.00 -2.22 -36.58 16 21 N -1.10 -22.92 5.47 -169.38 -0.93 -23.85 16 22 C 0.14 2.56 3.52 44.99 0.16 2.72 16 23 C -0.15 -1.93 9.44 71.99 0.68 -1.25 16 24 C -0.17 -3.43 9.52 71.98 0.69 -2.75 16 25 C 0.25 9.16 9.73 84.66 0.82 9.99 16 26 N -0.58 -25.50 9.17 -193.22 -1.77 -27.27 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 1.84 8.14 -2.38 -0.02 1.83 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.09 4.33 5.40 -2.39 -0.01 4.32 16 35 H 0.05 2.29 7.47 -2.38 -0.02 2.28 16 36 H 0.28 13.29 8.31 -92.71 -0.77 12.52 16 37 H 0.13 5.39 6.30 -2.91 -0.02 5.37 16 38 H 0.15 4.69 7.70 -2.91 -0.02 4.67 16 39 H 0.43 6.74 8.84 -96.74 -0.85 5.88 16 40 H 0.09 1.72 7.50 -2.39 -0.02 1.70 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.04 1.04 6.16 -2.39 -0.01 1.02 16 47 H 0.17 5.39 7.62 -2.91 -0.02 5.36 16 Total: -1.00 -64.21 392.27 0.15 -64.06 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: 0.12 Total: 35.87 kcal Atomic # 6 Polarization: -37.59 SS G_CDS: 6.50 Total: -31.10 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -3.82 Total: -117.06 kcal Atomic # 8 Polarization: -68.11 SS G_CDS: -4.35 Total: -72.46 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Atomic # 16 Polarization: 81.16 SS G_CDS: -0.32 Total: 80.84 kcal Total: -64.21 0.15 -64.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.309 kcal (2) G-P(sol) polarization free energy of solvation -64.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds