Wall clock time and date at job start Sat Apr 11 2020 06:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.32561 * 121.64535 * 2 1 4 4 S 1.77231 * 105.31794 * 179.97438 * 3 2 1 5 5 C 1.72209 * 94.84622 * 0.02562 * 4 3 2 6 6 O 1.21833 * 127.05351 * 179.97438 * 5 4 3 7 7 N 1.34245 * 105.88553 * 0.02562 * 5 4 3 8 8 C 1.46500 * 121.37583 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47156 * 90.02596 * 8 7 5 10 10 O 1.21288 * 119.99862 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99978 * 179.97438 * 9 8 7 12 12 C 1.46507 * 119.99577 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46423 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.46778 * 179.97438 * 13 12 11 15 15 C 1.52994 * 109.47155 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47377 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.47375 * 180.02562 * 16 15 14 18 18 N 1.46497 * 109.46925 * 180.02562 * 17 16 15 19 19 C 1.36940 * 119.99657 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00353 * 359.97438 * 19 18 17 21 21 C 1.38820 * 120.00038 * 179.97438 * 19 18 17 22 22 N 1.31621 * 119.99578 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00163 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47290 * 89.99827 * 23 21 19 25 25 H 1.48496 * 109.47438 * 209.99935 * 23 21 19 26 26 H 1.48505 * 109.47008 * 329.99879 * 23 21 19 27 27 H 1.09001 * 109.46940 * 270.02483 * 1 2 3 28 28 H 1.09003 * 109.46972 * 30.01884 * 1 2 3 29 29 H 1.08995 * 109.46841 * 150.02109 * 1 2 3 30 30 H 1.08004 * 127.34458 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.46422 * 210.01595 * 8 7 5 32 32 H 1.08997 * 109.47450 * 330.01923 * 8 7 5 33 33 H 0.96996 * 119.99835 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.46908 * 299.99086 * 12 11 9 35 35 H 1.08992 * 109.47182 * 59.99971 * 12 11 9 36 36 H 1.08994 * 109.47391 * 299.99497 * 13 12 11 37 37 H 1.08999 * 109.47148 * 60.00438 * 13 12 11 38 38 H 1.08998 * 109.47629 * 300.00319 * 14 13 12 39 39 H 1.09009 * 109.46644 * 60.00054 * 14 13 12 40 40 H 1.09007 * 109.47199 * 300.00430 * 15 14 13 41 41 H 1.09002 * 109.47491 * 60.00241 * 15 14 13 42 42 H 1.08998 * 109.47209 * 300.00313 * 16 15 14 43 43 H 1.09004 * 109.47120 * 60.00271 * 16 15 14 44 44 H 1.09006 * 109.46591 * 299.99915 * 17 16 15 45 45 H 1.08997 * 109.47150 * 59.99732 * 17 16 15 46 46 H 0.96996 * 120.00460 * 359.97438 * 18 17 16 47 47 H 0.97000 * 119.99710 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6303 0.0008 5 6 3.5607 -1.0574 0.0003 6 8 4.3674 -1.9703 0.0001 7 7 2.2222 -1.1605 -0.0010 8 6 1.5577 -2.4661 -0.0023 9 6 1.3280 -2.9143 1.4180 10 8 1.6847 -2.2124 2.3406 11 7 0.7262 -4.0951 1.6631 12 6 0.5035 -4.5310 3.0439 13 6 -0.1917 -5.8940 3.0425 14 6 -0.4238 -6.3496 4.4846 15 6 -1.1196 -7.7122 4.4832 16 6 -1.3523 -8.1675 5.9252 17 6 -2.0475 -9.5305 5.9238 18 7 -2.2708 -9.9661 7.3046 19 6 -2.8823 -11.1658 7.5536 20 1 -3.2003 -11.7906 6.7321 21 6 -3.0935 -11.5789 8.8619 22 7 -2.7054 -10.8176 9.8631 23 14 -3.9283 -13.2150 9.2016 24 1 -2.9024 -14.2849 9.2920 25 1 -4.6732 -13.1340 10.4837 26 1 -4.8730 -13.5270 8.0991 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5135 30 1 1.8154 2.1367 0.0004 31 1 0.6004 -2.3859 -0.5173 32 1 2.1867 -3.1934 -0.5157 33 1 0.4407 -4.6562 0.9252 34 1 1.4611 -4.6117 3.5584 35 1 -0.1249 -3.8036 3.5577 36 1 -1.1493 -5.8129 2.5282 37 1 0.4364 -6.6216 2.5286 38 1 0.5339 -6.4307 4.9987 39 1 -1.0517 -5.6219 4.9988 40 1 -2.0774 -7.6306 3.9692 41 1 -0.4921 -8.4401 3.9688 42 1 -0.3947 -8.2490 6.4395 43 1 -1.9800 -7.4396 6.4392 44 1 -3.0051 -9.4493 5.4094 45 1 -1.4194 -10.2581 5.4099 46 1 -1.9848 -9.4051 8.0424 47 1 -2.8526 -11.1064 10.7773 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180244088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:40 Heat of formation + Delta-G solvation = -46.186594 kcal Electronic energy + Delta-G solvation = -25627.257621 eV Core-core repulsion = 21743.786426 eV Total energy + Delta-G solvation = -3883.471194 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.74047 -39.73641 -37.99779 -36.90292 -35.49622 -34.05422 -33.12402 -32.02069 -30.91935 -29.90660 -27.71425 -26.54089 -24.46553 -23.87012 -22.39715 -21.73452 -21.16299 -20.68917 -20.46683 -18.56115 -18.11167 -17.74644 -16.98624 -16.46567 -16.26436 -16.04520 -15.66829 -15.35389 -14.80437 -14.66175 -14.43013 -14.31294 -14.21718 -14.06922 -13.51824 -13.42497 -13.36222 -13.02708 -12.76658 -12.59143 -12.41203 -12.11060 -11.78233 -11.61925 -11.42439 -11.23044 -10.95223 -10.80127 -10.76068 -10.70676 -10.53981 -10.41551 -10.28605 -10.00413 -9.90062 -9.64533 -9.58048 -8.84950 -8.40267 -6.89401 -5.74532 -3.03010 0.49845 0.93552 1.31680 1.63060 2.01419 2.14289 2.70455 3.44505 3.49124 3.51236 3.86375 4.05246 4.09286 4.35901 4.46491 4.49407 4.62406 4.67209 4.84047 4.86571 4.88781 4.96371 5.12097 5.17087 5.29851 5.33609 5.52148 5.55014 5.60527 5.63752 5.65597 5.87764 5.91433 5.95759 6.09724 6.16542 6.30776 6.31747 6.40114 6.46693 6.80098 6.90391 6.92490 6.94451 7.62291 7.71378 8.44830 9.55450 10.15053 10.49508 11.48591 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.037211 B = 0.001217 C = 0.001211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.291186 B =23000.725895 C =23123.992461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.108 3.892 3 C -0.237 4.237 4 S 0.011 5.989 5 C 0.485 3.515 6 O -0.471 6.471 7 N -0.517 5.517 8 C 0.079 3.921 9 C 0.496 3.504 10 O -0.523 6.523 11 N -0.725 5.725 12 C 0.118 3.882 13 C -0.130 4.130 14 C -0.116 4.116 15 C -0.113 4.113 16 C -0.127 4.127 17 C 0.152 3.848 18 N -0.735 5.735 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.193 0.807 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.402 0.598 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.257 26.983 -28.084 39.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.002 4.002 3 C -0.375 4.375 4 S 0.254 5.746 5 C 0.167 3.833 6 O -0.350 6.350 7 N -0.238 5.238 8 C -0.050 4.050 9 C 0.280 3.720 10 O -0.398 6.398 11 N -0.377 5.377 12 C -0.005 4.005 13 C -0.168 4.168 14 C -0.155 4.155 15 C -0.151 4.151 16 C -0.165 4.165 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.093 0.907 30 H 0.210 0.790 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.237 0.763 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.139 27.419 -27.422 39.840 hybrid contribution -1.707 -1.813 0.259 2.504 sum 7.431 25.606 -27.163 38.062 Atomic orbital electron populations 1.20814 0.86585 1.04333 1.04342 1.19364 0.95776 0.84717 1.00358 1.24883 0.93284 1.01306 1.18059 1.85195 1.08294 1.00386 1.80693 1.21615 0.83439 0.96038 0.82202 1.90982 1.48533 1.42522 1.53001 1.45608 1.06333 1.06493 1.65379 1.21726 1.01491 0.85603 0.96221 1.20731 0.78179 0.81856 0.91268 1.90783 1.49450 1.53965 1.45589 1.45961 1.61238 1.20648 1.09875 1.21504 1.01112 0.96221 0.81698 1.21832 1.00773 0.95103 0.99111 1.21521 1.01415 0.97748 0.94781 1.21496 1.00240 0.95609 0.97759 1.21732 1.01025 0.98171 0.95557 1.20655 0.96158 0.92339 0.88388 1.42394 1.71999 1.22245 1.01290 1.19260 1.30359 0.95699 0.91802 0.91220 1.24755 1.02020 0.98810 0.95560 1.69667 1.52739 1.37777 0.98134 0.86174 0.79013 0.83625 0.77295 1.21721 1.21747 1.20779 0.89331 0.88829 0.90747 0.78966 0.85717 0.85642 0.76323 0.91193 0.91156 0.91182 0.91170 0.91587 0.91611 0.92090 0.92074 0.92080 0.92083 0.96606 0.96597 0.78333 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.24 9.70 36.01 0.35 0.10 16 2 C 0.11 0.62 6.59 -82.51 -0.54 0.08 16 3 C -0.24 -1.30 11.24 28.82 0.32 -0.98 16 4 S 0.01 0.09 22.97 -107.50 -2.47 -2.38 16 5 C 0.48 5.24 8.27 53.82 0.45 5.68 16 6 O -0.47 -6.57 17.55 5.07 0.09 -6.48 16 7 N -0.52 -4.07 2.09 -118.57 -0.25 -4.31 16 8 C 0.08 0.42 5.75 -5.19 -0.03 0.39 16 9 C 0.50 4.17 7.90 -10.99 -0.09 4.09 16 10 O -0.52 -6.91 16.43 5.55 0.09 -6.82 16 11 N -0.72 -4.49 5.56 -60.29 -0.33 -4.82 16 12 C 0.12 0.92 5.67 -4.04 -0.02 0.90 16 13 C -0.13 -0.92 5.33 -26.73 -0.14 -1.06 16 14 C -0.12 -1.11 5.21 -26.73 -0.14 -1.25 16 15 C -0.11 -1.33 5.21 -26.74 -0.14 -1.47 16 16 C -0.13 -2.04 5.33 -26.73 -0.14 -2.18 16 17 C 0.15 3.13 6.26 -4.04 -0.03 3.11 16 18 N -0.74 -19.34 5.60 -59.91 -0.34 -19.68 16 19 C -0.24 -6.92 9.99 -15.05 -0.15 -7.07 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -28.84 13.06 55.49 0.72 -28.11 16 23 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 27 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.04 8.10 -51.93 -0.42 -0.38 16 29 H 0.07 0.07 6.18 -51.93 -0.32 -0.25 16 30 H 0.19 0.46 8.06 -52.48 -0.42 0.03 16 31 H 0.13 0.16 6.13 -51.93 -0.32 -0.16 16 32 H 0.13 0.58 7.80 -51.93 -0.41 0.18 16 33 H 0.40 1.17 8.47 -40.82 -0.35 0.82 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.38 10.54 7.67 -40.82 -0.31 10.23 16 47 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 406.49 15.07 6.13 6.13 Total: -1.00 -38.20 406.49 -9.37 -47.57 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.59 Total: 1.43 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -0.40 Total: -0.21 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.19 Total: -56.92 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.18 Total: -13.30 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.47 Total: -2.38 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -38.20 -9.37 -47.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180244088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.383 kcal (2) G-P(sol) polarization free energy of solvation -38.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds