Wall clock time and date at job start Sat Apr 11 2020 06:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99780 * 2 1 4 4 N 1.46499 * 109.46798 * 125.00403 * 3 2 1 5 5 C 1.46501 * 119.99720 * 269.99901 * 4 3 2 6 6 C 1.50699 * 109.47078 * 269.99668 * 5 4 3 7 7 H 1.08000 * 120.00163 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00157 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00206 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00298 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.46828 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46896 * 120.00408 * 10 8 6 13 13 H 1.48504 * 109.47093 * 240.00204 * 10 8 6 14 14 C 1.34778 * 120.00328 * 90.00138 * 4 3 2 15 15 O 1.21601 * 120.00128 * 180.02562 * 14 4 3 16 16 N 1.34774 * 120.00067 * 359.97438 * 14 4 3 17 17 C 1.40840 * 120.00262 * 179.97438 * 16 14 4 18 18 C 1.40243 * 126.07475 * 0.03454 * 17 16 14 19 19 N 1.30835 * 108.34002 * 179.97438 * 18 17 16 20 20 N 1.40070 * 108.36720 * 359.97438 * 19 18 17 21 21 C 1.46501 * 126.06040 * 179.97438 * 20 19 18 22 22 C 1.50697 * 109.47436 * 305.03026 * 21 20 19 23 23 C 1.38678 * 120.42012 * 89.99876 * 22 21 20 24 24 C 1.38625 * 118.42261 * 180.02562 * 23 22 21 25 25 C 1.38222 * 119.16079 * 359.97438 * 24 23 22 26 26 N 1.31852 * 120.76489 * 0.02562 * 25 24 23 27 27 C 1.31887 * 121.72468 * 359.97438 * 26 25 24 28 28 C 1.35731 * 126.07734 * 180.29565 * 17 16 14 29 29 H 1.07995 * 120.00009 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99892 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.00025 * 180.02562 * 2 1 3 32 32 H 1.08991 * 109.47617 * 5.00519 * 3 2 1 33 33 H 1.09006 * 109.47059 * 244.99641 * 3 2 1 34 34 H 1.08993 * 109.47148 * 29.99824 * 5 4 3 35 35 H 1.09001 * 109.47346 * 150.00253 * 5 4 3 36 36 H 0.97001 * 120.00769 * 179.97438 * 9 8 6 37 37 H 0.97002 * 119.99568 * 0.02562 * 16 14 4 38 38 H 1.08000 * 125.82512 * 0.02562 * 18 17 16 39 39 H 1.09004 * 109.47172 * 185.02724 * 21 20 19 40 40 H 1.08999 * 109.46656 * 65.03016 * 21 20 19 41 41 H 1.08003 * 120.78653 * 0.29511 * 23 22 21 42 42 H 1.07998 * 120.41681 * 180.02562 * 24 23 22 43 43 H 1.07997 * 119.61999 * 179.97438 * 25 24 23 44 44 H 1.08002 * 119.61624 * 180.02562 * 27 26 25 45 45 H 1.08001 * 126.21983 * 0.02562 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5588 1.8648 2.4248 6 6 2.8443 3.3435 2.4805 7 1 3.3034 3.8370 1.6366 8 6 2.5185 4.0666 3.6083 9 7 1.9590 3.4658 4.6358 10 14 2.8717 5.8996 3.6770 11 1 3.4996 6.3308 2.4023 12 1 1.6010 6.6413 3.8782 13 1 3.7947 6.1839 4.8051 14 6 4.2497 0.8662 0.9823 15 8 5.0217 0.8879 1.9216 16 7 4.6497 0.3754 -0.2075 17 6 5.9623 -0.1107 -0.3634 18 6 6.9533 -0.1457 0.6284 19 7 8.0367 -0.6642 0.1097 20 7 7.7774 -0.9795 -1.2302 21 6 8.7240 -1.5792 -2.1739 22 6 9.9741 -0.7397 -2.2333 23 6 11.0322 -0.9939 -1.3736 24 6 12.1620 -0.1957 -1.4638 25 6 12.1963 0.8195 -2.4011 26 7 11.1712 1.0325 -3.2026 27 6 10.0806 0.2931 -3.1450 28 6 6.4946 -0.6240 -1.5016 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 1.4888 1.6966 2.5459 35 1 3.0989 1.3602 3.2260 36 1 1.7300 3.9743 5.4294 37 1 4.0337 0.3577 -0.9566 38 1 6.8409 0.1963 1.6466 39 1 8.2701 -1.6256 -3.1638 40 1 8.9780 -2.5862 -1.8430 41 1 10.9790 -1.7975 -0.6540 42 1 13.0050 -0.3655 -0.8104 43 1 13.0726 1.4461 -2.4775 44 1 9.2612 0.4974 -3.8182 45 1 5.9892 -0.7330 -2.4498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261234534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:12 Heat of formation + Delta-G solvation = 127.549658 kcal Electronic energy + Delta-G solvation = -28323.042727 eV Core-core repulsion = 24343.954102 eV Total energy + Delta-G solvation = -3979.088625 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.22499 -40.34111 -39.32716 -35.88227 -34.93847 -33.92117 -33.09226 -32.40167 -32.04317 -30.95607 -29.09129 -27.44466 -26.36389 -25.38041 -23.89930 -23.03453 -22.79215 -21.15728 -20.79352 -19.99430 -19.01719 -17.56238 -17.40042 -17.03855 -16.70545 -16.45923 -15.96577 -15.70416 -15.01774 -14.78012 -14.63529 -14.47851 -14.24247 -13.89880 -13.83567 -13.45807 -13.33628 -13.27268 -12.78336 -12.76487 -12.55460 -12.23418 -11.96022 -11.77879 -11.29569 -11.11492 -10.86849 -10.61631 -10.58678 -10.41548 -10.15636 -10.12096 -9.80237 -9.61488 -9.42740 -9.23468 -9.22422 -9.21165 -8.41030 -7.84651 -7.31230 -6.01713 -4.06138 0.67609 0.98872 1.92338 2.38408 2.52277 3.01604 3.31898 3.35337 3.40077 3.45456 3.55811 4.03777 4.06122 4.23060 4.38492 4.43077 4.56514 4.62612 4.63567 4.85444 4.86122 5.04417 5.17212 5.24003 5.30806 5.32391 5.36630 5.41933 5.51190 5.72903 5.78285 5.80127 5.93203 5.96560 6.13927 6.35145 6.54415 6.73835 6.79485 6.91929 7.01384 7.24735 7.38825 7.54694 7.64562 7.67953 7.88275 7.97407 8.25814 8.62514 8.95391 9.28855 9.59418 11.06118 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011770 B = 0.002568 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.359119 B =10901.273274 C =12414.535939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.172 4.172 3 C 0.137 3.863 4 N -0.604 5.604 5 C 0.262 3.738 6 C -0.525 4.525 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.704 3.296 15 O -0.572 6.572 16 N -0.671 5.671 17 C 0.047 3.953 18 C 0.056 3.944 19 N -0.285 5.285 20 N -0.380 5.380 21 C 0.192 3.808 22 C -0.160 4.160 23 C -0.039 4.039 24 C -0.176 4.176 25 C 0.104 3.896 26 N -0.488 5.488 27 C 0.119 3.881 28 C -0.008 4.008 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.034 0.966 35 H 0.045 0.955 36 H 0.262 0.738 37 H 0.400 0.600 38 H 0.209 0.791 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.156 0.844 44 H 0.153 0.847 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.056 -12.463 -18.411 24.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.191 4.191 3 C 0.013 3.987 4 N -0.338 5.338 5 C 0.143 3.857 6 C -0.564 4.564 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.406 3.594 15 O -0.448 6.448 16 N -0.321 5.321 17 C -0.059 4.059 18 C -0.132 4.132 19 N -0.106 5.106 20 N -0.167 5.167 21 C 0.070 3.930 22 C -0.163 4.163 23 C -0.066 4.066 24 C -0.196 4.196 25 C -0.053 4.053 26 N -0.196 5.196 27 C -0.039 4.039 28 C -0.154 4.154 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.236 0.764 38 H 0.225 0.775 39 H 0.123 0.877 40 H 0.110 0.890 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.173 0.827 44 H 0.171 0.829 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 12.787 -12.072 -17.959 25.135 hybrid contribution -1.208 0.613 0.202 1.369 sum 11.580 -11.458 -17.757 24.097 Atomic orbital electron populations 1.23823 0.95824 1.01798 1.00275 1.23461 0.96501 0.98992 1.00154 1.20522 0.93201 0.95620 0.89334 1.47536 1.08779 1.63281 1.14163 1.19229 0.95221 0.93562 0.77694 1.21499 1.40254 0.93406 1.01240 0.92416 1.24916 0.95105 0.98686 0.95345 1.69942 1.42225 1.36043 1.05177 0.86464 0.77856 0.85076 0.78150 1.19836 1.21038 1.20880 1.15822 0.83104 0.78525 0.81988 1.90764 1.52613 1.62099 1.39364 1.42270 1.10823 1.65667 1.13305 1.17568 0.87097 1.07025 0.94254 1.24677 0.88362 0.98525 1.01646 1.77331 1.23340 1.20386 0.89559 1.48193 1.08747 1.50951 1.08791 1.20287 0.85813 0.95140 0.91745 1.20894 0.96576 0.99818 0.99038 1.21520 0.91807 0.97929 0.95308 1.22176 0.99528 0.97358 1.00493 1.22838 0.96583 0.95014 0.90834 1.67723 1.00742 1.26809 1.24355 1.22658 0.95347 0.89970 0.95914 1.21667 0.87149 1.07349 0.99275 0.88225 0.88777 0.87770 0.89071 0.91526 0.94800 0.93663 0.92800 0.76418 0.77458 0.87704 0.89047 0.84514 0.84540 0.82678 0.82940 0.81090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 14.32 29.01 0.42 -1.80 16 2 C -0.17 -2.32 9.85 -36.03 -0.35 -2.67 16 3 C 0.14 2.14 5.61 -5.19 -0.03 2.11 16 4 N -0.60 -12.54 2.44 -182.18 -0.44 -12.98 16 5 C 0.26 6.77 5.16 -5.19 -0.03 6.74 16 6 C -0.52 -14.79 9.39 -34.44 -0.32 -15.11 16 7 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 10 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 C 0.70 14.72 8.25 -86.92 -0.72 14.01 16 15 O -0.57 -14.23 13.08 5.28 0.07 -14.16 16 16 N -0.67 -10.66 5.34 -14.39 -0.08 -10.74 16 17 C 0.05 0.73 6.90 -83.86 -0.58 0.15 16 18 C 0.06 0.99 10.84 -17.22 -0.19 0.80 16 19 N -0.28 -4.48 12.40 30.70 0.38 -4.10 16 20 N -0.38 -4.53 3.69 -62.20 -0.23 -4.76 16 21 C 0.19 1.48 6.67 -5.19 -0.03 1.44 16 22 C -0.16 -1.46 5.33 -104.48 -0.56 -2.02 16 23 C -0.04 -0.35 9.86 -39.28 -0.39 -0.74 16 24 C -0.18 -1.46 10.11 -39.44 -0.40 -1.86 16 25 C 0.10 0.96 11.18 -17.55 -0.20 0.76 16 26 N -0.49 -5.46 10.36 -13.26 -0.14 -5.60 16 27 C 0.12 1.17 10.86 -17.55 -0.19 0.98 16 28 C -0.01 -0.10 11.52 -16.67 -0.19 -0.29 16 29 H 0.10 1.21 7.84 -52.49 -0.41 0.80 16 30 H 0.09 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.10 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.09 1.48 7.72 -51.93 -0.40 1.08 16 33 H 0.07 0.84 6.36 -51.93 -0.33 0.51 16 34 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 35 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.40 4.96 6.56 -40.82 -0.27 4.69 16 38 H 0.21 4.19 5.91 -52.49 -0.31 3.88 16 39 H 0.10 0.46 8.03 -51.93 -0.42 0.05 16 40 H 0.09 0.58 8.10 -51.93 -0.42 0.16 16 41 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 42 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 391.30 15.07 5.90 5.90 Total: -1.00 -36.23 391.30 -8.55 -44.78 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.87 Total: 6.34 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -3.85 Total: 4.16 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: 0.23 Total: -63.97 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.07 Total: -14.16 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.23 -8.55 -44.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261234534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.326 kcal (2) G-P(sol) polarization free energy of solvation -36.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds