Wall clock time and date at job start Sat Apr 11 2020 06:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99780 * 2 1 4 4 N 1.46499 * 109.46798 * 125.00403 * 3 2 1 5 5 C 1.46501 * 119.99720 * 269.99901 * 4 3 2 6 6 C 1.50699 * 109.47078 * 269.99668 * 5 4 3 7 7 H 1.08000 * 120.00163 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00157 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00206 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00298 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.46828 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46896 * 120.00408 * 10 8 6 13 13 H 1.48504 * 109.47093 * 240.00204 * 10 8 6 14 14 C 1.34778 * 120.00328 * 90.00138 * 4 3 2 15 15 O 1.21601 * 120.00128 * 180.02562 * 14 4 3 16 16 N 1.34774 * 120.00067 * 359.97438 * 14 4 3 17 17 C 1.40840 * 120.00262 * 179.97438 * 16 14 4 18 18 C 1.40243 * 126.07475 * 0.03454 * 17 16 14 19 19 N 1.30835 * 108.34002 * 179.97438 * 18 17 16 20 20 N 1.40070 * 108.36720 * 359.97438 * 19 18 17 21 21 C 1.46501 * 126.06040 * 179.97438 * 20 19 18 22 22 C 1.50697 * 109.47436 * 305.03026 * 21 20 19 23 23 C 1.38678 * 120.42012 * 89.99876 * 22 21 20 24 24 C 1.38625 * 118.42261 * 180.02562 * 23 22 21 25 25 C 1.38222 * 119.16079 * 359.97438 * 24 23 22 26 26 N 1.31852 * 120.76489 * 0.02562 * 25 24 23 27 27 C 1.31887 * 121.72468 * 359.97438 * 26 25 24 28 28 C 1.35731 * 126.07734 * 180.29565 * 17 16 14 29 29 H 1.07995 * 120.00009 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99892 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.00025 * 180.02562 * 2 1 3 32 32 H 1.08991 * 109.47617 * 5.00519 * 3 2 1 33 33 H 1.09006 * 109.47059 * 244.99641 * 3 2 1 34 34 H 1.08993 * 109.47148 * 29.99824 * 5 4 3 35 35 H 1.09001 * 109.47346 * 150.00253 * 5 4 3 36 36 H 0.97001 * 120.00769 * 179.97438 * 9 8 6 37 37 H 0.97002 * 119.99568 * 0.02562 * 16 14 4 38 38 H 1.08000 * 125.82512 * 0.02562 * 18 17 16 39 39 H 1.09004 * 109.47172 * 185.02724 * 21 20 19 40 40 H 1.08999 * 109.46656 * 65.03016 * 21 20 19 41 41 H 1.08003 * 120.78653 * 0.29511 * 23 22 21 42 42 H 1.07998 * 120.41681 * 180.02562 * 24 23 22 43 43 H 1.07997 * 119.61999 * 179.97438 * 25 24 23 44 44 H 1.08002 * 119.61624 * 180.02562 * 27 26 25 45 45 H 1.08001 * 126.21983 * 0.02562 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5588 1.8648 2.4248 6 6 2.8443 3.3435 2.4805 7 1 3.3034 3.8370 1.6366 8 6 2.5185 4.0666 3.6083 9 7 1.9590 3.4658 4.6358 10 14 2.8717 5.8996 3.6770 11 1 3.4996 6.3308 2.4023 12 1 1.6010 6.6413 3.8782 13 1 3.7947 6.1839 4.8051 14 6 4.2497 0.8662 0.9823 15 8 5.0217 0.8879 1.9216 16 7 4.6497 0.3754 -0.2075 17 6 5.9623 -0.1107 -0.3634 18 6 6.9533 -0.1457 0.6284 19 7 8.0367 -0.6642 0.1097 20 7 7.7774 -0.9795 -1.2302 21 6 8.7240 -1.5792 -2.1739 22 6 9.9741 -0.7397 -2.2333 23 6 11.0322 -0.9939 -1.3736 24 6 12.1620 -0.1957 -1.4638 25 6 12.1963 0.8195 -2.4011 26 7 11.1712 1.0325 -3.2026 27 6 10.0806 0.2931 -3.1450 28 6 6.4946 -0.6240 -1.5016 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 1.4888 1.6966 2.5459 35 1 3.0989 1.3602 3.2260 36 1 1.7300 3.9743 5.4294 37 1 4.0337 0.3577 -0.9566 38 1 6.8409 0.1963 1.6466 39 1 8.2701 -1.6256 -3.1638 40 1 8.9780 -2.5862 -1.8430 41 1 10.9790 -1.7975 -0.6540 42 1 13.0050 -0.3655 -0.8104 43 1 13.0726 1.4461 -2.4775 44 1 9.2612 0.4974 -3.8182 45 1 5.9892 -0.7330 -2.4498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261234534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:11 Heat of formation + Delta-G solvation = 103.554398 kcal Electronic energy + Delta-G solvation = -28324.083240 eV Core-core repulsion = 24343.954102 eV Total energy + Delta-G solvation = -3980.129138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.32199 -41.14705 -40.72552 -37.32774 -36.09515 -35.20595 -34.72686 -33.65863 -33.09050 -31.85642 -30.39214 -29.10327 -27.29952 -26.79344 -24.95057 -24.55334 -23.62846 -22.29977 -21.97269 -21.14750 -20.33188 -18.89420 -18.52323 -18.40623 -17.96186 -17.41934 -17.15179 -16.70944 -16.45632 -16.25529 -15.83477 -15.61174 -15.57431 -15.08663 -14.74254 -14.52664 -14.46570 -14.19203 -14.08647 -13.98612 -13.73041 -13.51474 -13.27510 -13.04180 -12.84789 -12.60865 -12.56648 -12.24807 -12.18984 -11.75713 -11.68826 -11.59516 -10.91512 -10.82624 -10.61983 -10.56873 -10.30702 -10.23070 -10.08070 -9.53350 -8.54818 -8.17756 -6.33095 -0.00726 0.31200 0.89481 1.28833 1.36978 1.39885 1.51179 1.60481 1.70587 2.03931 2.38878 2.55294 2.86524 3.09873 3.17493 3.43677 3.62496 3.80134 3.96949 4.00851 4.02556 4.07121 4.16145 4.24922 4.35795 4.38558 4.50490 4.59804 4.62379 4.73417 4.82799 4.84549 5.02182 5.08046 5.14548 5.20400 5.26119 5.30706 5.56459 5.71765 5.73103 5.78145 5.89192 5.96231 6.10418 6.11226 6.20467 6.72031 6.76834 6.96876 7.17430 7.34257 7.74941 8.87682 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011770 B = 0.002568 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.359119 B =10901.273274 C =12414.535939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.185 4.185 3 C 0.134 3.866 4 N -0.610 5.610 5 C 0.282 3.718 6 C -0.538 4.538 7 H 0.051 0.949 8 C 0.009 3.991 9 N -0.928 5.928 10 Si 0.964 3.036 11 H -0.269 1.269 12 H -0.268 1.268 13 H -0.284 1.284 14 C 0.697 3.303 15 O -0.624 6.624 16 N -0.647 5.647 17 C 0.002 3.998 18 C 0.022 3.978 19 N -0.306 5.306 20 N -0.365 5.365 21 C 0.183 3.817 22 C -0.166 4.166 23 C -0.053 4.053 24 C -0.179 4.179 25 C 0.091 3.909 26 N -0.519 5.519 27 C 0.106 3.894 28 C 0.038 3.962 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.026 0.974 35 H -0.002 1.002 36 H 0.266 0.734 37 H 0.419 0.581 38 H 0.169 0.831 39 H 0.151 0.849 40 H 0.109 0.891 41 H 0.144 0.856 42 H 0.158 0.842 43 H 0.175 0.825 44 H 0.172 0.828 45 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.973 -13.092 -21.950 27.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.204 4.204 3 C 0.012 3.988 4 N -0.343 5.343 5 C 0.160 3.840 6 C -0.577 4.577 7 H 0.070 0.930 8 C -0.190 4.190 9 N -0.568 5.568 10 Si 0.789 3.211 11 H -0.194 1.194 12 H -0.193 1.193 13 H -0.210 1.210 14 C 0.398 3.602 15 O -0.504 6.504 16 N -0.298 5.298 17 C -0.103 4.103 18 C -0.164 4.164 19 N -0.129 5.129 20 N -0.150 5.150 21 C 0.063 3.937 22 C -0.169 4.169 23 C -0.080 4.080 24 C -0.198 4.198 25 C -0.066 4.066 26 N -0.228 5.228 27 C -0.051 4.051 28 C -0.110 4.110 29 H 0.118 0.882 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.044 0.956 35 H 0.016 0.984 36 H 0.075 0.925 37 H 0.258 0.742 38 H 0.185 0.815 39 H 0.169 0.831 40 H 0.127 0.873 41 H 0.162 0.838 42 H 0.176 0.824 43 H 0.192 0.808 44 H 0.189 0.811 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 12.714 -12.735 -21.579 28.098 hybrid contribution -1.066 0.694 1.196 1.746 sum 11.648 -12.041 -20.383 26.384 Atomic orbital electron populations 1.24048 0.95508 1.02889 0.97987 1.23322 0.96841 0.98113 1.02141 1.20776 0.92745 0.96646 0.88626 1.47344 1.09848 1.63255 1.13902 1.18603 0.93777 0.92304 0.79277 1.21751 1.40133 0.94585 1.01249 0.93046 1.25795 0.94801 1.03453 0.94921 1.70054 1.43038 1.37911 1.05770 0.85419 0.78175 0.79486 0.78017 1.19360 1.19308 1.20971 1.16021 0.82610 0.78635 0.82920 1.90751 1.54019 1.64045 1.41598 1.41772 1.11483 1.64618 1.11941 1.17785 0.86725 1.10330 0.95431 1.24204 0.90388 1.00690 1.01123 1.77261 1.22720 1.21071 0.91823 1.48676 1.09629 1.48852 1.07877 1.20837 0.84868 0.95135 0.92836 1.21026 0.97135 0.99901 0.98853 1.21815 0.92287 0.98347 0.95532 1.22459 1.00151 0.96817 1.00422 1.23244 0.96956 0.95575 0.90783 1.67725 1.01720 1.27869 1.25476 1.23036 0.95603 0.89979 0.96499 1.22437 0.86299 1.02674 0.99568 0.88207 0.86625 0.87004 0.90014 0.88150 0.95618 0.98389 0.92467 0.74150 0.81461 0.83092 0.87277 0.83797 0.82418 0.80825 0.81066 0.75392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.78 14.32 67.78 0.97 -2.81 16 2 C -0.18 -4.72 9.85 25.65 0.25 -4.47 16 3 C 0.13 4.07 5.61 85.63 0.48 4.55 16 4 N -0.61 -26.08 2.44 -848.56 -2.07 -28.15 16 5 C 0.28 15.35 5.16 85.63 0.44 15.79 16 6 C -0.54 -31.36 9.39 25.60 0.24 -31.12 16 7 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 8 C 0.01 0.53 5.46 84.65 0.46 1.00 16 9 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 10 Si 0.96 45.75 29.54 68.60 2.03 47.77 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 14 C 0.70 30.23 8.25 179.05 1.48 31.71 16 15 O -0.62 -33.44 13.08 -4.03 -0.05 -33.49 16 16 N -0.65 -20.09 5.34 -317.70 -1.70 -21.79 16 17 C 0.00 0.07 6.90 37.60 0.26 0.33 16 18 C 0.02 0.83 10.84 85.33 0.92 1.75 16 19 N -0.31 -9.59 12.40 -56.78 -0.70 -10.29 16 20 N -0.36 -7.57 3.69 -350.71 -1.30 -8.87 16 21 C 0.18 2.05 6.67 85.63 0.57 2.62 16 22 C -0.17 -2.61 5.33 -19.78 -0.11 -2.72 16 23 C -0.05 -0.88 9.86 22.47 0.22 -0.65 16 24 C -0.18 -2.75 10.11 22.36 0.23 -2.53 16 25 C 0.09 1.58 11.18 84.69 0.95 2.53 16 26 N -0.52 -10.96 10.36 -195.85 -2.03 -12.99 16 27 C 0.11 1.85 10.86 84.67 0.92 2.77 16 28 C 0.04 0.74 11.52 83.49 0.96 1.70 16 29 H 0.10 2.26 7.84 -2.91 -0.02 2.24 16 30 H 0.12 2.14 8.06 -2.91 -0.02 2.11 16 31 H 0.11 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.08 2.62 7.72 -2.39 -0.02 2.60 16 33 H 0.10 2.29 6.36 -2.38 -0.02 2.27 16 34 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 35 H 0.00 -0.13 7.42 -2.39 -0.02 -0.15 16 36 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 37 H 0.42 9.31 6.56 -92.71 -0.61 8.70 16 38 H 0.17 7.56 5.91 -2.91 -0.02 7.54 16 39 H 0.15 0.37 8.03 -2.38 -0.02 0.36 16 40 H 0.11 0.94 8.10 -2.39 -0.02 0.92 16 41 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 42 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 43 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 44 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 45 H 0.23 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -86.06 391.30 4.12 -81.94 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.41 Total: 21.77 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 9.25 Total: 20.43 kcal Atomic # 7 Polarization: -130.91 SS G_CDS: -7.51 Total: -138.42 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.05 Total: -33.49 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -86.06 4.12 -81.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261234534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.499 kcal (2) G-P(sol) polarization free energy of solvation -86.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds