Wall clock time and date at job start Sat Apr 11 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46859 * 2 1 4 4 N 1.46497 * 109.46653 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00213 * 264.11599 * 4 3 2 6 6 H 1.08009 * 120.00075 * 188.01946 * 5 4 3 7 7 C 1.38806 * 120.00141 * 8.01828 * 5 4 3 8 8 N 1.31620 * 119.99833 * 25.64386 * 7 5 4 9 9 Si 1.86798 * 120.00238 * 205.64913 * 7 5 4 10 10 H 1.48501 * 109.47279 * 84.98581 * 9 7 5 11 11 H 1.48504 * 109.47483 * 204.98680 * 9 7 5 12 12 H 1.48499 * 109.47106 * 324.98585 * 9 7 5 13 13 C 1.46501 * 119.99941 * 84.11982 * 4 3 2 14 14 C 1.52996 * 109.47072 * 269.99804 * 13 4 3 15 15 N 1.46504 * 109.47432 * 179.97438 * 14 13 4 16 16 C 1.34775 * 120.00409 * 179.97438 * 15 14 13 17 17 O 1.21281 * 119.99946 * 359.72846 * 16 15 14 18 18 C 1.50694 * 120.00261 * 179.97438 * 16 15 14 19 19 C 1.52999 * 109.47400 * 179.72768 * 18 16 15 20 20 N 1.46501 * 109.47189 * 180.02562 * 19 18 16 21 21 C 1.36310 * 121.37983 * 269.74108 * 20 19 18 22 22 C 1.50699 * 121.64572 * 0.02562 * 21 20 19 23 23 C 1.32563 * 116.71041 * 179.78893 * 21 20 19 24 24 S 1.77226 * 105.31696 * 0.42911 * 23 21 20 25 25 C 1.34238 * 121.38209 * 90.02304 * 20 19 18 26 26 O 1.21831 * 127.05626 * 359.94188 * 25 20 19 27 27 H 1.08996 * 109.47067 * 299.99800 * 1 2 3 28 28 H 1.09003 * 109.46923 * 59.99583 * 1 2 3 29 29 H 1.09003 * 109.47000 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47067 * 240.00200 * 2 1 3 31 31 H 1.09000 * 109.46922 * 119.99876 * 2 1 3 32 32 H 1.09003 * 109.46741 * 60.00255 * 3 2 1 33 33 H 1.08994 * 109.47117 * 300.00094 * 3 2 1 34 34 H 0.97000 * 119.99787 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47138 * 149.99691 * 13 4 3 36 36 H 1.09003 * 109.47520 * 29.99548 * 13 4 3 37 37 H 1.08994 * 109.47435 * 59.99631 * 14 13 4 38 38 H 1.09001 * 109.47311 * 299.99730 * 14 13 4 39 39 H 0.97005 * 119.99450 * 0.02562 * 15 14 13 40 40 H 1.09001 * 109.47173 * 299.73512 * 18 16 15 41 41 H 1.09003 * 109.46925 * 59.72407 * 18 16 15 42 42 H 1.08994 * 109.47111 * 299.99987 * 19 18 16 43 43 H 1.08993 * 109.46983 * 60.00319 * 19 18 16 44 44 H 1.08997 * 109.47714 * 89.99724 * 22 21 20 45 45 H 1.09004 * 109.47413 * 210.00081 * 22 21 20 46 46 H 1.09009 * 109.47246 * 329.99675 * 22 21 20 47 47 H 1.08002 * 127.34238 * 180.16170 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1892 1.5642 1.1805 6 1 5.2613 1.6945 1.1721 7 6 3.5049 1.5203 2.3874 8 7 2.3546 0.8857 2.4689 9 14 4.2163 2.3618 3.8957 10 1 3.8294 3.7955 3.8914 11 1 3.6883 1.7103 5.1213 12 1 5.6968 2.2485 3.8736 13 6 4.2380 1.3123 -1.2611 14 6 4.4930 -0.1679 -1.5523 15 7 5.2255 -0.2982 -2.8144 16 6 5.5630 -1.5191 -3.2748 17 8 5.2646 -2.5097 -2.6418 18 6 6.3160 -1.6531 -4.5733 19 6 6.5777 -3.1329 -4.8607 20 7 7.3102 -3.2631 -6.1227 21 6 6.6574 -3.3974 -7.3117 22 6 5.1525 -3.4182 -7.3896 23 6 7.4114 -3.5039 -8.3968 24 16 9.0835 -3.4349 -7.8135 25 6 8.6522 -3.2608 -6.1555 26 8 9.4096 -3.1563 -5.2069 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 1.8766 0.8547 3.3124 35 1 5.1903 1.8368 -1.1838 36 1 3.6492 1.7454 -2.0698 37 1 3.5407 -0.6924 -1.6296 38 1 5.0818 -0.6011 -0.7437 39 1 5.4683 0.4944 -3.3183 40 1 5.7242 -1.2249 -5.3823 41 1 7.2660 -1.1239 -4.4986 42 1 7.1695 -3.5610 -4.0517 43 1 5.6277 -3.6620 -4.9354 44 1 4.7812 -2.4016 -7.5190 45 1 4.8409 -4.0294 -8.2366 46 1 4.7469 -3.8387 -6.4693 47 1 7.0779 -3.6141 -9.4181 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267314395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:37 Heat of formation + Delta-G solvation = -18.712410 kcal Electronic energy + Delta-G solvation = -27282.944920 eV Core-core repulsion = 23400.665096 eV Total energy + Delta-G solvation = -3882.279824 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.38538 -39.47115 -37.86840 -36.64087 -34.49579 -33.67809 -31.98454 -31.73156 -31.27737 -28.90872 -27.63492 -25.54270 -25.24955 -23.73176 -22.96250 -20.87575 -20.73634 -20.33741 -19.82517 -18.40167 -17.73914 -16.89187 -16.75388 -16.34273 -15.80246 -15.47076 -15.24131 -14.90271 -14.67833 -14.25048 -14.11054 -14.03353 -13.77675 -13.44936 -13.38740 -13.09216 -12.91134 -12.69633 -12.57332 -12.37186 -11.77110 -11.62956 -11.54752 -11.44993 -11.34826 -11.08289 -10.88414 -10.64732 -10.42431 -10.35862 -10.04660 -10.00778 -9.94240 -9.84275 -9.64243 -9.26715 -8.69907 -8.37445 -8.29047 -6.97197 -5.81297 -3.12951 0.63981 1.02858 1.46026 1.83054 2.38699 2.71370 3.34979 3.39113 3.46398 3.47566 4.11526 4.41600 4.44898 4.48158 4.65361 4.81066 4.93584 4.99766 5.10684 5.13825 5.24833 5.28512 5.35334 5.49747 5.60391 5.76986 5.78611 5.86513 6.14762 6.19282 6.24777 6.40485 6.50055 6.60054 6.63807 6.64844 6.81593 6.96300 7.01085 7.15479 7.24021 7.64297 7.66474 7.75857 8.07538 8.29641 8.35736 9.18822 9.80344 10.24295 11.22101 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.002070 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.639837 B =13523.690344 C =14488.540147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.171 3.829 4 N -0.591 5.591 5 C -0.257 4.257 6 H 0.074 0.926 7 C 0.001 3.999 8 N -0.890 5.890 9 Si 0.897 3.103 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.143 3.857 14 C 0.089 3.911 15 N -0.722 5.722 16 C 0.512 3.488 17 O -0.542 6.542 18 C -0.157 4.157 19 C 0.115 3.885 20 N -0.533 5.533 21 C 0.105 3.895 22 C -0.105 4.105 23 C -0.242 4.242 24 S -0.005 6.005 25 C 0.479 3.521 26 O -0.468 6.468 27 H 0.051 0.949 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.020 0.980 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.003 0.997 34 H 0.253 0.747 35 H 0.050 0.950 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.396 0.604 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.265 -6.240 -24.237 25.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.046 3.954 4 N -0.311 5.311 5 C -0.386 4.386 6 H 0.092 0.908 7 C -0.197 4.197 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.216 1.216 11 H -0.219 1.219 12 H -0.208 1.208 13 C 0.015 3.985 14 C -0.037 4.037 15 N -0.373 5.373 16 C 0.297 3.703 17 O -0.420 6.420 18 C -0.198 4.198 19 C -0.010 4.010 20 N -0.253 5.253 21 C -0.006 4.006 22 C -0.164 4.164 23 C -0.380 4.380 24 S 0.238 5.762 25 C 0.161 3.839 26 O -0.347 6.347 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.039 0.961 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.021 0.979 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.229 0.771 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.099 0.901 47 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 5.630 -6.929 -23.546 25.182 hybrid contribution -0.762 0.714 1.194 1.586 sum 4.868 -6.215 -22.352 23.706 Atomic orbital electron populations 1.21628 0.98554 0.99318 1.00017 1.22227 0.92920 1.00484 1.01349 1.20934 0.81523 0.94523 0.98430 1.44243 1.01912 1.83581 1.01394 1.19263 0.92252 1.43580 0.83472 0.90770 1.24725 0.97575 1.00042 0.97313 1.70160 1.17187 1.41140 1.25033 0.86370 0.78446 0.79882 0.82563 1.21567 1.21939 1.20756 1.20950 0.96384 0.91679 0.89523 1.22779 0.95890 1.01764 0.83251 1.46204 1.57978 1.07489 1.25601 1.20204 0.79725 0.83960 0.86451 1.90739 1.54982 1.37124 1.59167 1.21973 1.02519 0.98033 0.97311 1.21661 0.98673 0.96542 0.84081 1.46175 1.06603 1.64120 1.08437 1.19501 0.96564 1.00031 0.84463 1.20849 0.86596 1.04273 1.04679 1.24885 0.92720 1.18592 1.01831 1.85185 1.09201 1.80151 1.01668 1.21631 0.83771 0.82890 0.95599 1.91002 1.52330 1.52593 1.38765 0.92958 0.95101 0.94810 0.96104 0.88340 0.89174 0.97879 0.93686 0.93214 0.93925 0.91496 0.91434 0.77100 0.88468 0.88363 0.87694 0.87726 0.89428 0.89058 0.90077 0.79153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.91 37.16 0.37 -2.23 16 2 C -0.13 -2.88 5.60 -26.73 -0.15 -3.03 16 3 C 0.17 3.92 4.92 -4.04 -0.02 3.90 16 4 N -0.59 -13.86 2.54 -173.24 -0.44 -14.30 16 5 C -0.26 -6.71 9.70 -15.06 -0.15 -6.85 16 6 H 0.07 1.92 7.94 -52.48 -0.42 1.51 16 7 C 0.00 0.04 4.89 -17.43 -0.09 -0.05 16 8 N -0.89 -24.08 8.62 55.49 0.48 -23.60 16 9 Si 0.90 21.24 29.62 -169.99 -5.04 16.20 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.14 2.68 5.82 -4.04 -0.02 2.65 16 14 C 0.09 1.62 5.88 -4.04 -0.02 1.59 16 15 N -0.72 -9.97 5.56 -60.30 -0.33 -10.31 16 16 C 0.51 7.20 7.83 -10.99 -0.09 7.12 16 17 O -0.54 -9.97 15.98 5.56 0.09 -9.88 16 18 C -0.16 -1.53 6.02 -27.89 -0.17 -1.70 16 19 C 0.12 1.17 4.56 -4.04 -0.02 1.15 16 20 N -0.53 -5.05 2.60 -117.29 -0.31 -5.35 16 21 C 0.11 0.71 6.59 -82.51 -0.54 0.17 16 22 C -0.10 -0.42 9.69 36.01 0.35 -0.07 16 23 C -0.24 -1.47 11.24 28.82 0.32 -1.14 16 24 S 0.00 -0.04 22.97 -107.50 -2.47 -2.51 16 25 C 0.48 5.68 8.27 53.81 0.45 6.13 16 26 O -0.47 -7.23 17.55 5.07 0.09 -7.14 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.02 0.44 5.98 -51.93 -0.31 0.13 16 31 H 0.10 2.55 6.33 -51.93 -0.33 2.22 16 32 H 0.09 2.32 5.85 -51.93 -0.30 2.01 16 33 H 0.00 0.06 7.98 -51.93 -0.41 -0.35 16 34 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 35 H 0.05 0.89 8.03 -51.93 -0.42 0.48 16 36 H 0.04 0.71 7.95 -51.93 -0.41 0.30 16 37 H 0.07 1.35 5.92 -51.93 -0.31 1.04 16 38 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.40 4.13 8.47 -40.82 -0.35 3.79 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.10 1.31 7.76 -51.93 -0.40 0.91 16 43 H 0.10 0.94 6.07 -51.93 -0.32 0.62 16 44 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.09 0.20 8.10 -51.93 -0.42 -0.22 16 46 H 0.08 0.37 6.18 -51.92 -0.32 0.05 16 47 H 0.19 0.57 8.06 -52.49 -0.42 0.15 16 LS Contribution 393.62 15.07 5.93 5.93 Total: -1.00 -32.07 393.62 -9.01 -41.08 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.23 Total: 2.23 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 0.22 Total: 7.65 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -0.60 Total: -53.56 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: 0.18 Total: -17.02 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.04 Total: 16.20 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.47 Total: -2.51 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.07 -9.01 -41.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267314395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.368 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds