Wall clock time and date at job start Sat Apr 11 2020 06:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47024 * 2 1 4 4 N 1.30176 * 126.80507 * 270.03040 * 3 2 1 5 5 O 1.20918 * 111.60672 * 179.97438 * 4 3 2 6 6 C 1.34049 * 111.56804 * 359.76035 * 5 4 3 7 7 C 1.50700 * 126.77970 * 180.29058 * 6 5 4 8 8 C 1.35445 * 106.44237 * 0.38028 * 6 5 4 9 9 C 1.50704 * 128.00665 * 179.90986 * 8 6 5 10 10 N 1.46898 * 109.47041 * 269.68106 * 9 8 6 11 11 C 1.46906 * 110.99888 * 179.97438 * 10 9 8 12 12 C 1.52993 * 109.47378 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47551 * 180.02562 * 12 11 10 14 14 C 1.46501 * 120.00104 * 89.99722 * 13 12 11 15 15 C 1.34776 * 119.99955 * 270.00015 * 13 12 11 16 16 O 1.21281 * 119.99879 * 359.97438 * 15 13 12 17 17 C 1.50696 * 120.00079 * 179.97438 * 15 13 12 18 18 S 1.81002 * 109.46937 * 179.97438 * 17 15 13 19 19 C 1.76206 * 99.99839 * 179.97438 * 18 17 15 20 20 H 1.07994 * 119.99798 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99827 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99740 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99854 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46832 * 89.99924 * 23 21 19 25 25 H 1.48495 * 109.47078 * 210.00087 * 23 21 19 26 26 H 1.48500 * 109.47163 * 330.00392 * 23 21 19 27 27 H 1.08997 * 109.46955 * 299.99405 * 1 2 3 28 28 H 1.08991 * 109.47424 * 59.99885 * 1 2 3 29 29 H 1.09002 * 109.46864 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46955 * 240.00595 * 2 1 3 31 31 H 1.08991 * 109.47424 * 120.00114 * 2 1 3 32 32 H 1.09000 * 109.46859 * 270.11278 * 7 6 5 33 33 H 1.08999 * 109.46864 * 30.10795 * 7 6 5 34 34 H 1.08990 * 109.47000 * 150.11092 * 7 6 5 35 35 H 1.08997 * 109.46924 * 149.68017 * 9 8 6 36 36 H 1.08995 * 109.46962 * 29.68171 * 9 8 6 37 37 H 1.00904 * 110.99913 * 303.95016 * 10 9 8 38 38 H 1.09004 * 109.47040 * 299.99934 * 11 10 9 39 39 H 1.09000 * 109.47033 * 59.99886 * 11 10 9 40 40 H 1.09004 * 109.46862 * 299.99897 * 12 11 10 41 41 H 1.09004 * 109.46998 * 59.99419 * 12 11 10 42 42 H 1.08995 * 109.47435 * 90.00542 * 14 13 12 43 43 H 1.09003 * 109.46535 * 210.00574 * 14 13 12 44 44 H 1.09002 * 109.46935 * 329.99804 * 14 13 12 45 45 H 1.09000 * 109.46926 * 299.99598 * 17 15 13 46 46 H 1.08996 * 109.47626 * 60.00051 * 17 15 13 47 47 H 0.97006 * 119.99670 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2918 2.1563 -1.0423 5 8 2.6804 3.2565 -0.7253 6 6 2.7253 3.3984 0.6069 7 6 3.1510 4.6264 1.3697 8 6 2.3146 2.2194 1.1321 9 6 2.1827 1.8471 2.5864 10 7 3.4456 1.2643 3.0591 11 6 3.3542 0.8890 4.4765 12 6 4.6854 0.2878 4.9318 13 7 4.5941 -0.0870 6.3450 14 6 4.1407 -1.4289 6.7192 15 6 4.9272 0.8027 7.3010 16 8 5.3029 1.9135 6.9913 17 6 4.8328 0.4174 8.7548 18 16 5.3444 1.8156 9.7840 19 6 5.1414 1.1076 11.3848 20 1 4.7914 0.0909 11.4851 21 6 5.4314 1.8567 12.5168 22 7 5.8586 3.0957 12.3944 23 14 5.2156 1.1064 14.2138 24 1 6.4806 0.4484 14.6286 25 1 4.8707 2.1739 15.1868 26 1 4.1239 0.1004 14.1751 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 4.2243 4.5850 1.5551 33 1 2.9173 5.5163 0.7852 34 1 2.6192 4.6661 2.3203 35 1 1.3802 1.1190 2.7037 36 1 1.9528 2.7384 3.1702 37 1 3.7137 0.4740 2.4920 38 1 3.1327 1.7740 5.0731 39 1 2.5597 0.1544 4.6073 40 1 4.9073 -0.5970 4.3352 41 1 5.4797 1.0228 4.8009 42 1 4.9993 -2.0971 6.7858 43 1 3.6377 -1.3861 7.6852 44 1 3.4477 -1.8017 5.9649 45 1 3.8039 0.1477 8.9931 46 1 5.4856 -0.4337 8.9483 47 1 6.0616 3.6191 13.1855 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267347926.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:41 Heat of formation + Delta-G solvation = 16.862797 kcal Electronic energy + Delta-G solvation = -26531.627784 eV Core-core repulsion = 22650.890617 eV Total energy + Delta-G solvation = -3880.737167 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.18070 -39.53766 -37.38576 -35.82403 -34.99906 -33.73499 -32.44272 -31.69873 -30.65880 -28.78542 -27.80053 -26.64025 -25.59214 -25.22182 -24.48953 -22.44470 -21.64644 -20.24230 -19.19057 -17.88944 -17.69384 -17.22256 -16.70623 -16.31871 -16.04113 -15.42173 -15.14629 -14.81946 -14.70426 -14.57429 -14.24035 -13.96683 -13.76124 -13.50280 -13.31105 -13.26839 -13.10684 -12.87280 -12.76856 -12.56498 -12.40127 -12.24790 -12.16453 -11.97304 -11.82524 -11.71999 -11.25001 -11.07680 -11.05182 -11.03752 -10.77005 -10.23497 -9.82178 -9.48443 -9.37377 -9.07982 -8.78841 -8.56310 -8.24137 -6.51599 -6.22999 -3.93645 1.20085 1.86392 2.82637 2.89568 3.03063 3.20997 3.24110 3.28790 3.55805 3.79152 4.09060 4.13011 4.18936 4.50241 4.56307 4.72517 4.75479 4.80122 4.91995 4.95698 5.05951 5.07808 5.12125 5.12551 5.17867 5.21186 5.28477 5.30563 5.36604 5.38499 5.53851 5.55795 5.58645 5.61361 5.64951 5.72427 5.80926 5.85749 5.87588 5.95549 6.11275 6.51519 6.69463 7.02018 7.49418 7.58198 8.01638 8.33709 8.53713 9.22268 10.84372 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021031 B = 0.001824 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.039381 B =15345.803335 C =16094.928998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.045 4.045 3 C 0.028 3.972 4 N -0.368 5.368 5 O 0.093 5.907 6 C -0.005 4.005 7 C -0.074 4.074 8 C -0.203 4.203 9 C 0.141 3.859 10 N -0.680 5.680 11 C 0.045 3.955 12 C 0.121 3.879 13 N -0.625 5.625 14 C 0.081 3.919 15 C 0.532 3.468 16 O -0.511 6.511 17 C -0.150 4.150 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.043 0.957 36 H 0.087 0.913 37 H 0.339 0.661 38 H 0.082 0.918 39 H 0.030 0.970 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.055 0.945 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.775 -7.351 -23.705 26.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 C -0.132 4.132 4 N -0.074 5.074 5 O 0.030 5.970 6 C -0.069 4.069 7 C -0.131 4.131 8 C -0.207 4.207 9 C 0.012 3.988 10 N -0.311 5.311 11 C -0.085 4.085 12 C -0.003 4.003 13 N -0.362 5.362 14 C -0.063 4.063 15 C 0.320 3.680 16 O -0.384 6.384 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.157 0.843 38 H 0.100 0.900 39 H 0.049 0.951 40 H 0.088 0.912 41 H 0.112 0.888 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.931 -5.112 -25.249 27.266 hybrid contribution -1.203 -2.787 2.147 3.718 sum -10.134 -7.899 -23.102 26.435 Atomic orbital electron populations 1.21724 0.93873 1.02368 1.02490 1.19916 0.96473 0.88316 1.03618 1.23424 1.02060 0.99061 0.88640 1.73830 1.16792 0.92806 1.23936 1.84810 1.62715 1.26786 1.22732 1.24348 1.00245 0.98916 0.83440 1.20384 1.03393 0.90945 0.98424 1.20771 1.09241 0.93831 0.96889 1.20054 0.90683 1.00000 0.88101 1.60351 1.31278 1.36342 1.03139 1.22366 0.97342 1.00305 0.88502 1.21234 0.97838 1.00297 0.80886 1.47823 1.68564 1.14041 1.05765 1.21766 0.99559 0.83259 1.01688 1.20367 0.76132 0.84320 0.87198 1.90708 1.44515 1.20509 1.82689 1.23558 1.04946 1.06994 0.94583 1.85404 1.86497 1.13221 0.98358 1.22855 1.52102 1.01963 0.91426 0.90961 1.24994 0.94566 0.94750 0.99289 1.70018 1.41889 1.08060 1.30249 0.86172 0.78610 0.78731 0.82010 1.20267 1.20749 1.19712 0.92311 0.92359 0.91564 0.90013 0.89965 0.88734 0.90046 0.88855 0.93856 0.89461 0.84314 0.89956 0.95148 0.91186 0.88826 0.92644 0.90606 0.91634 0.89305 0.89285 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.90 37.16 0.37 -0.53 16 2 C -0.05 -0.31 6.44 -27.88 -0.18 -0.49 16 3 C 0.03 0.27 6.58 -82.10 -0.54 -0.27 16 4 N -0.37 -4.24 12.07 33.42 0.40 -3.84 16 5 O 0.09 1.01 11.20 17.15 0.19 1.21 16 6 C -0.01 -0.05 7.49 -35.31 -0.26 -0.31 16 7 C -0.07 -0.49 10.30 36.01 0.37 -0.11 16 8 C -0.20 -1.86 5.83 -104.42 -0.61 -2.47 16 9 C 0.14 1.16 6.01 -4.97 -0.03 1.13 16 10 N -0.68 -6.09 6.49 -115.06 -0.75 -6.84 16 11 C 0.04 0.46 6.01 -3.82 -0.02 0.43 16 12 C 0.12 1.37 5.67 -4.05 -0.02 1.34 16 13 N -0.63 -8.31 2.87 -181.58 -0.52 -8.83 16 14 C 0.08 0.77 10.24 59.85 0.61 1.39 16 15 C 0.53 9.80 7.69 -10.99 -0.08 9.71 16 16 O -0.51 -11.36 15.44 5.56 0.09 -11.28 16 17 C -0.15 -2.98 4.71 36.00 0.17 -2.81 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 23 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.57 7.43 -51.93 -0.39 0.18 16 35 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.73 7.44 -51.93 -0.39 0.35 16 37 H 0.34 2.65 8.72 -39.29 -0.34 2.31 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 41 H 0.09 1.29 7.42 -51.93 -0.39 0.91 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.75 6.44 -51.93 -0.33 0.41 16 44 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 45 H 0.09 1.62 7.40 -51.92 -0.38 1.24 16 46 H 0.09 1.65 8.11 -51.92 -0.42 1.23 16 47 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 409.39 15.07 6.17 6.17 Total: -1.00 -34.94 409.39 -8.63 -43.57 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.67 Total: -1.48 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -0.03 Total: -5.78 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -0.13 Total: -44.70 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.28 Total: -10.07 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.94 -8.63 -43.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267347926.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.434 kcal (2) G-P(sol) polarization free energy of solvation -34.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds