Wall clock time and date at job start Sat Apr 11 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 C 1.34328 * 126.44317 * 119.99639 * 4 2 1 6 6 N 1.34480 * 107.66585 * 180.02562 * 5 4 2 7 7 C 1.30256 * 108.70317 * 359.97438 * 6 5 4 8 8 C 1.50694 * 125.62176 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.47161 * 90.02886 * 8 7 6 10 10 C 1.46905 * 111.00257 * 180.02562 * 9 8 7 11 11 C 1.52994 * 109.47193 * 179.97438 * 10 9 8 12 12 N 1.46495 * 109.47211 * 179.97438 * 11 10 9 13 13 C 1.46501 * 120.00592 * 270.00173 * 12 11 10 14 14 C 1.34783 * 119.99933 * 90.00184 * 12 11 10 15 15 O 1.21278 * 119.99687 * 0.02562 * 14 12 11 16 16 C 1.50699 * 120.00239 * 179.97438 * 14 12 11 17 17 S 1.80997 * 109.47044 * 180.02562 * 16 14 12 18 18 C 1.76204 * 99.99872 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99776 * 0.02562 * 18 17 16 20 20 C 1.38794 * 119.99869 * 179.97438 * 18 17 16 21 21 N 1.31635 * 120.00027 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 120.00309 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47181 * 89.99363 * 22 20 18 24 24 H 1.48501 * 109.46919 * 209.99995 * 22 20 18 25 25 H 1.48503 * 109.46722 * 329.99741 * 22 20 18 26 26 O 1.33971 * 108.76123 * 359.73747 * 7 6 5 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.07999 * 126.16791 * 0.02562 * 5 4 2 35 35 H 1.08999 * 109.47345 * 210.02934 * 8 7 6 36 36 H 1.08997 * 109.47508 * 330.02768 * 8 7 6 37 37 H 1.00901 * 111.00064 * 56.04712 * 9 8 7 38 38 H 1.09001 * 109.46900 * 299.99689 * 10 9 8 39 39 H 1.08997 * 109.46810 * 59.99560 * 10 9 8 40 40 H 1.08996 * 109.47835 * 300.00490 * 11 10 9 41 41 H 1.09009 * 109.47050 * 60.00494 * 11 10 9 42 42 H 1.09003 * 109.46793 * 89.99513 * 13 12 11 43 43 H 1.08991 * 109.47501 * 209.99719 * 13 12 11 44 44 H 1.08996 * 109.46921 * 330.00581 * 13 12 11 45 45 H 1.08998 * 109.46988 * 300.00571 * 16 14 12 46 46 H 1.09005 * 109.46732 * 60.00234 * 16 14 12 47 47 H 0.96998 * 120.00186 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 2.8077 -1.8071 1.2580 6 7 3.0276 -2.1191 2.5475 7 6 2.4133 -1.2498 3.2982 8 6 2.4059 -1.2412 4.8051 9 7 3.5346 -0.4390 5.2957 10 6 3.5598 -0.4085 6.7642 11 6 4.7465 0.4338 7.2364 12 7 4.7714 0.4648 8.7009 13 6 4.0520 1.5166 9.4237 14 6 5.4561 -0.4744 9.3833 15 8 6.0520 -1.3449 8.7849 16 6 5.4822 -0.4423 10.8897 17 16 6.4773 -1.8231 11.5054 18 6 6.3394 -1.5497 13.2407 19 1 5.7618 -0.7160 13.6117 20 6 6.9723 -2.4064 14.1306 21 7 6.8698 -2.2018 15.4269 22 14 7.9709 -3.8488 13.4888 23 1 9.3787 -3.4236 13.2827 24 1 7.9280 -4.9582 14.4750 25 1 7.3995 -4.3111 12.1984 26 8 1.7932 -0.3616 2.5099 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 3.1862 -2.3418 0.3994 35 1 1.4709 -0.8089 5.1615 36 1 2.4982 -2.2624 5.1748 37 1 3.5070 0.4949 4.9147 38 1 2.6328 0.0294 7.1345 39 1 3.6603 -1.4241 7.1470 40 1 5.6734 -0.0042 6.8662 41 1 4.6464 1.4495 6.8536 42 1 3.0343 1.1849 9.6297 43 1 4.5629 1.7264 10.3633 44 1 4.0234 2.4208 8.8158 45 1 5.9191 0.4981 11.2255 46 1 4.4652 -0.5277 11.2725 47 1 7.3118 -2.8007 16.0489 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267349115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:44 Heat of formation + Delta-G solvation = -15.372790 kcal Electronic energy + Delta-G solvation = -26030.501562 eV Core-core repulsion = 22148.366555 eV Total energy + Delta-G solvation = -3882.135007 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.67797 -39.63482 -37.12536 -36.17687 -35.23361 -34.96853 -32.43265 -31.57986 -29.80309 -28.26108 -27.77025 -26.75019 -25.66430 -25.24303 -23.09661 -22.57376 -22.27718 -20.68383 -19.31137 -17.68890 -17.39179 -17.09138 -16.81148 -16.37043 -16.04672 -15.90104 -15.35046 -15.08737 -14.97291 -14.58187 -14.36116 -13.76317 -13.75240 -13.63720 -13.44727 -13.35579 -13.02412 -12.90034 -12.78791 -12.77726 -12.36217 -12.30393 -12.12144 -11.87529 -11.83683 -11.63231 -11.58308 -11.29359 -11.21058 -10.99637 -10.72583 -10.58707 -9.84936 -9.49846 -9.12988 -8.99575 -8.91130 -8.65245 -8.48112 -6.91344 -6.28421 -4.00195 1.05741 2.20336 2.36056 2.69727 2.92133 3.15839 3.34543 3.52206 3.55737 3.64372 4.03597 4.08829 4.29619 4.34058 4.46485 4.57915 4.58345 4.75433 4.81202 4.82559 4.90865 5.02871 5.03357 5.10587 5.10785 5.19024 5.19690 5.21876 5.26659 5.29510 5.35324 5.42526 5.60075 5.60720 5.61939 5.72982 5.73865 5.77533 5.85621 5.96814 6.00358 6.36205 6.57464 6.86362 7.40169 7.45584 7.94527 8.41488 8.42708 9.17959 10.80720 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026128 B = 0.001641 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.404901 B =17055.715259 C =17698.344408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.008 4.008 3 C -0.150 4.150 4 C -0.039 4.039 5 C -0.041 4.041 6 N -0.459 5.459 7 C 0.190 3.810 8 C 0.161 3.839 9 N -0.678 5.678 10 C 0.046 3.954 11 C 0.121 3.879 12 N -0.623 5.623 13 C 0.079 3.921 14 C 0.530 3.470 15 O -0.511 6.511 16 C -0.121 4.121 17 S -0.143 6.143 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 O -0.200 6.200 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.182 0.818 35 H 0.061 0.939 36 H 0.117 0.883 37 H 0.343 0.657 38 H 0.036 0.964 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.008 10.246 -30.152 35.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 C -0.207 4.207 4 C -0.092 4.092 5 C -0.180 4.180 6 N -0.188 5.188 7 C -0.018 4.018 8 C 0.031 3.969 9 N -0.311 5.311 10 C -0.084 4.084 11 C -0.002 4.002 12 N -0.360 5.360 13 C -0.065 4.065 14 C 0.318 3.682 15 O -0.385 6.385 16 C -0.272 4.272 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.112 4.112 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 O -0.087 6.087 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.199 0.801 35 H 0.079 0.921 36 H 0.135 0.865 37 H 0.161 0.839 38 H 0.054 0.946 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.115 0.885 46 H 0.115 0.885 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.299 7.917 -30.608 34.299 hybrid contribution -1.406 1.575 0.621 2.200 sum -14.705 9.492 -29.987 34.721 Atomic orbital electron populations 1.21886 0.93439 1.02615 1.02765 1.19755 0.96532 0.96073 0.90300 1.21882 1.01696 0.94385 1.02748 1.23441 1.03044 0.98957 0.83784 1.23147 1.02006 0.97662 0.95212 1.70472 1.20144 1.26245 1.01955 1.26050 0.93853 0.86260 0.95597 1.20208 0.93544 1.02012 0.81100 1.60258 1.43690 1.18697 1.08494 1.22384 0.97789 1.02561 0.85650 1.21258 0.99772 0.99538 0.79680 1.47782 1.52645 1.29577 1.05977 1.21821 0.96755 0.90073 0.97809 1.20350 0.77702 0.80608 0.89549 1.90718 1.42542 1.34999 1.70200 1.23318 1.05398 1.05136 0.93317 1.84825 1.66182 1.34358 1.06274 1.22308 1.38429 1.17927 0.88216 0.89418 1.24706 0.95179 0.97272 0.94090 1.69939 1.42651 1.38002 1.01120 0.86741 0.81703 0.82481 0.80980 1.19197 1.19944 1.15881 1.84350 1.59579 1.48276 1.16469 0.91373 0.92086 0.92123 0.87865 0.91383 0.92081 0.92024 0.80072 0.92134 0.86453 0.83911 0.94603 0.89585 0.88703 0.90915 0.92692 0.90385 0.91310 0.88520 0.88518 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.18 37.16 0.34 -0.32 16 2 C -0.01 -0.04 3.33 -91.77 -0.31 -0.35 16 3 C -0.15 -0.69 9.17 37.15 0.34 -0.35 16 4 C -0.04 -0.32 5.89 -35.68 -0.21 -0.53 16 5 C -0.04 -0.40 11.79 -17.77 -0.21 -0.60 16 6 N -0.46 -5.64 11.29 -11.10 -0.13 -5.76 16 7 C 0.19 2.02 7.85 -12.95 -0.10 1.91 16 8 C 0.16 1.43 6.31 -4.98 -0.03 1.40 16 9 N -0.68 -6.44 6.49 -115.06 -0.75 -7.18 16 10 C 0.05 0.46 6.01 -3.82 -0.02 0.44 16 11 C 0.12 1.34 5.71 -4.05 -0.02 1.32 16 12 N -0.62 -8.03 2.87 -181.58 -0.52 -8.56 16 13 C 0.08 0.73 10.29 59.85 0.62 1.34 16 14 C 0.53 9.48 7.69 -10.98 -0.08 9.39 16 15 O -0.51 -11.08 15.44 5.56 0.09 -11.00 16 16 C -0.12 -2.34 4.71 36.01 0.17 -2.17 16 17 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 18 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 19 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 20 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.54 13.97 55.49 0.78 -25.76 16 22 Si 0.86 21.88 27.74 -169.99 -4.72 17.17 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.23 -6.01 6.74 56.52 0.38 -5.63 16 26 O -0.20 -1.95 10.78 5.34 0.06 -1.90 16 27 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.10 0.34 8.11 -51.93 -0.42 -0.08 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.34 2.72 8.72 -39.29 -0.34 2.38 16 38 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.09 1.30 7.42 -51.93 -0.39 0.91 16 41 H 0.07 0.59 7.89 -51.92 -0.41 0.18 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.75 6.44 -51.93 -0.33 0.42 16 44 H 0.07 0.46 7.89 -51.93 -0.41 0.05 16 45 H 0.10 1.73 7.40 -51.92 -0.38 1.35 16 46 H 0.10 1.74 8.11 -51.91 -0.42 1.32 16 47 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 407.51 15.07 6.14 6.14 Total: -1.00 -36.02 407.51 -8.11 -44.13 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -7.76 Total: -1.17 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 0.69 Total: -0.49 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.62 Total: -47.26 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.14 Total: -12.89 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.72 Total: 17.17 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.02 -8.11 -44.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267349115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.756 kcal (2) G-P(sol) polarization free energy of solvation -36.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds