Wall clock time and date at job start Sat Apr 11 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30260 * 125.61801 * 2 1 4 4 C 1.34485 * 108.69814 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.16042 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47591 * 275.02595 * 5 4 3 7 7 C 1.46900 * 111.00051 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47097 * 324.99803 * 7 6 5 9 9 C 1.53001 * 109.47043 * 204.99858 * 7 6 5 10 10 N 1.46498 * 109.46937 * 54.99929 * 9 7 6 11 11 C 1.34780 * 120.00195 * 179.97438 * 10 9 7 12 12 O 1.21292 * 119.99667 * 0.02562 * 11 10 9 13 13 C 1.50693 * 120.00503 * 179.97438 * 11 10 9 14 14 S 1.80998 * 109.47453 * 180.02562 * 13 11 10 15 15 C 1.76203 * 100.00081 * 180.02562 * 14 13 11 16 16 H 1.07997 * 119.99598 * 359.97438 * 15 14 13 17 17 C 1.38797 * 119.99995 * 180.02562 * 15 14 13 18 18 N 1.31629 * 120.00007 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00090 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46738 * 90.00312 * 19 17 15 21 21 H 1.48500 * 109.47508 * 210.00607 * 19 17 15 22 22 H 1.48502 * 109.47253 * 330.00877 * 19 17 15 23 23 C 1.53000 * 109.47204 * 85.00347 * 7 6 5 24 24 C 1.52995 * 109.47587 * 64.99586 * 23 7 6 25 25 C 1.53001 * 109.47243 * 184.99824 * 23 7 6 26 26 C 1.34330 * 107.66950 * 359.97438 * 4 3 2 27 27 O 1.33967 * 125.62312 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.46498 * 90.00168 * 1 2 3 29 29 H 1.09000 * 109.46598 * 209.99572 * 1 2 3 30 30 H 1.08993 * 109.47221 * 329.99839 * 1 2 3 31 31 H 1.09003 * 109.47426 * 35.03204 * 5 4 3 32 32 H 1.09006 * 109.47012 * 155.02282 * 5 4 3 33 33 H 1.00904 * 110.99803 * 303.95504 * 6 5 4 34 34 H 1.09000 * 109.47139 * 175.00231 * 9 7 6 35 35 H 1.09005 * 109.47403 * 295.00277 * 9 7 6 36 36 H 0.96996 * 120.00077 * 0.02562 * 10 9 7 37 37 H 1.09000 * 109.47397 * 300.00556 * 13 11 10 38 38 H 1.09005 * 109.46538 * 60.00230 * 13 11 10 39 39 H 0.97000 * 119.99817 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.47064 * 304.99770 * 23 7 6 41 41 H 1.08997 * 109.47160 * 59.99832 * 24 23 7 42 42 H 1.08998 * 109.47605 * 179.97438 * 24 23 7 43 43 H 1.09005 * 109.47185 * 300.00571 * 24 23 7 44 44 H 1.08998 * 109.47272 * 179.97438 * 25 23 7 45 45 H 1.08997 * 109.46710 * 299.99682 * 25 23 7 46 46 H 1.08999 * 109.47008 * 59.99825 * 25 23 7 47 47 H 1.08000 * 126.44082 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 0.0006 5 6 4.7570 1.5727 0.0002 6 7 5.0760 1.9630 -1.3796 7 6 6.2484 2.8473 -1.4189 8 1 6.2478 3.4906 -0.5390 9 6 6.1944 3.7099 -2.6814 10 7 4.9186 4.4286 -2.7275 11 6 4.6476 5.2552 -3.7570 12 8 5.4598 5.4036 -4.6456 13 6 3.3351 5.9941 -3.8048 14 16 3.2713 7.0147 -5.2983 15 6 1.6794 7.7443 -5.1025 16 1 1.0759 7.5003 -4.2407 17 6 1.2006 8.6317 -6.0563 18 7 0.0117 9.1772 -5.9097 19 14 2.2442 9.0531 -7.5472 20 1 1.9462 8.0990 -8.6455 21 1 1.9340 10.4349 -7.9941 22 1 3.6819 8.9602 -7.1874 23 6 7.5241 2.0028 -1.4325 24 6 7.5851 1.1918 -2.7284 25 6 8.7447 2.9213 -1.3477 26 6 3.5698 -0.6757 0.0015 27 8 2.2873 -1.0890 0.0005 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 4.5419 2.4642 0.5895 32 1 5.6070 1.0465 0.4348 33 1 5.2163 1.1509 -1.9617 34 1 7.0151 4.4270 -2.6669 35 1 6.2843 3.0725 -3.5611 36 1 4.2693 4.3103 -2.0168 37 1 2.5146 5.2768 -3.8200 38 1 3.2446 6.6311 -2.9249 39 1 -0.3227 9.7976 -6.5761 40 1 7.5198 1.3244 -0.5793 41 1 7.5893 1.8701 -3.5816 42 1 8.4941 0.5905 -2.7384 43 1 6.7154 0.5375 -2.7889 44 1 9.6536 2.3196 -1.3570 45 1 8.7489 3.5996 -2.2009 46 1 8.7013 3.4989 -0.4244 47 1 4.4470 -1.3058 0.0025 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268208577.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:48 Heat of formation + Delta-G solvation = -23.838190 kcal Electronic energy + Delta-G solvation = -27003.176176 eV Core-core repulsion = 23120.674081 eV Total energy + Delta-G solvation = -3882.502095 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.62197 -39.63568 -38.34096 -35.64632 -33.97434 -33.91822 -32.36619 -32.16159 -29.99023 -28.61256 -27.67207 -27.21862 -25.57326 -25.21778 -23.43344 -21.93395 -21.29323 -20.32397 -19.71252 -17.79765 -17.51281 -17.07263 -16.69035 -16.21152 -15.85868 -15.56925 -15.05041 -14.92167 -14.77638 -14.52589 -14.45037 -14.03410 -13.63291 -13.54194 -13.43695 -13.36521 -13.03206 -12.96634 -12.72788 -12.71758 -12.37003 -12.28442 -12.08204 -11.61683 -11.50677 -11.32908 -11.19808 -11.17503 -10.94794 -10.84879 -10.72423 -10.50510 -9.78902 -9.36467 -9.13991 -8.93632 -8.76557 -8.67412 -8.40235 -6.82315 -6.21918 -3.92308 1.11927 2.31011 2.44686 2.89589 3.16821 3.37926 3.43848 3.56429 3.61447 3.77401 3.92370 4.33984 4.39644 4.42127 4.47303 4.51895 4.60526 4.81783 4.87654 4.95629 5.00807 5.05607 5.07130 5.16069 5.17167 5.24484 5.31774 5.36364 5.43755 5.50023 5.54256 5.59195 5.61382 5.64002 5.69908 5.83604 5.90321 5.94006 5.97247 6.00250 6.17795 6.56419 6.76914 6.99348 7.48473 7.89570 8.01618 8.49858 8.70515 9.24619 10.87492 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009293 B = 0.002728 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.356880 B =10262.019633 C =12843.764508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.191 3.809 3 N -0.464 5.464 4 C -0.004 4.004 5 C 0.140 3.860 6 N -0.675 5.675 7 C 0.080 3.920 8 H 0.088 0.912 9 C 0.131 3.869 10 N -0.722 5.722 11 C 0.529 3.471 12 O -0.529 6.529 13 C -0.121 4.121 14 S -0.145 6.145 15 C -0.519 4.519 16 H 0.088 0.912 17 C 0.095 3.905 18 N -0.882 5.882 19 Si 0.857 3.143 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.235 1.235 23 C -0.121 4.121 24 C -0.156 4.156 25 C -0.149 4.149 26 C -0.078 4.078 27 O -0.205 6.205 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.345 0.655 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.405 0.595 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.270 0.730 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.056 0.944 47 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.405 -23.512 16.851 31.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.016 4.016 3 N -0.193 5.193 4 C -0.125 4.125 5 C 0.011 3.989 6 N -0.307 5.307 7 C -0.031 4.031 8 H 0.106 0.894 9 C 0.006 3.994 10 N -0.376 5.376 11 C 0.315 3.685 12 O -0.405 6.405 13 C -0.272 4.272 14 S 0.082 5.918 15 C -0.666 4.666 16 H 0.106 0.894 17 C -0.114 4.114 18 N -0.519 5.519 19 Si 0.682 3.318 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.159 1.159 23 C -0.141 4.141 24 C -0.213 4.213 25 C -0.207 4.207 26 C -0.149 4.149 27 O -0.091 6.091 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.066 0.934 33 H 0.165 0.835 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.241 0.759 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.075 0.925 47 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 11.895 -22.049 15.299 29.355 hybrid contribution -0.009 -1.372 0.881 1.630 sum 11.886 -23.421 16.180 30.848 Atomic orbital electron populations 1.20292 0.81211 1.05102 1.05024 1.26437 0.96657 0.78503 0.99985 1.70404 1.01436 1.29909 1.17591 1.21591 0.93359 0.92152 1.05370 1.20170 0.90470 0.97319 0.90959 1.60508 1.38440 1.22569 1.09175 1.21924 0.87695 0.94281 0.99165 0.89412 1.21361 0.86642 0.94280 0.97070 1.45761 1.19729 1.46030 1.26045 1.20235 0.88294 0.78759 0.81230 1.90680 1.48796 1.63768 1.37236 1.23253 0.97161 1.02061 1.04735 1.84723 1.25672 1.54282 1.27147 1.22345 1.00516 1.30774 1.12993 0.89408 1.24713 0.94618 0.94314 0.97715 1.69946 1.16991 1.29292 1.35700 0.86731 0.83280 0.78480 0.83334 1.19267 1.20043 1.15899 1.21725 0.95855 0.97778 0.98787 1.21975 1.01567 1.00137 0.97649 1.21865 0.96879 0.99523 1.02468 1.24728 0.85120 0.96133 1.08953 1.84440 1.16820 1.37973 1.69911 0.88662 0.89470 0.87895 0.88995 0.93395 0.83460 0.91263 0.91374 0.75945 0.88571 0.88661 0.92033 0.91089 0.91325 0.92364 0.92768 0.92549 0.91740 0.92482 0.77250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 36.01 0.38 0.03 16 2 C 0.19 1.86 8.34 -12.94 -0.11 1.75 16 3 N -0.46 -5.42 11.30 -7.36 -0.08 -5.51 16 4 C 0.00 -0.04 6.62 -82.81 -0.55 -0.59 16 5 C 0.14 1.04 6.02 -4.98 -0.03 1.01 16 6 N -0.67 -5.55 5.68 -107.99 -0.61 -6.17 16 7 C 0.08 0.62 1.97 -67.71 -0.13 0.49 16 8 H 0.09 0.66 7.80 -51.93 -0.41 0.26 16 9 C 0.13 1.50 4.67 -4.04 -0.02 1.48 16 10 N -0.72 -10.14 5.39 -60.29 -0.32 -10.47 16 11 C 0.53 10.04 7.85 -10.99 -0.09 9.95 16 12 O -0.53 -11.90 15.86 5.55 0.09 -11.81 16 13 C -0.12 -2.52 6.16 36.00 0.22 -2.30 16 14 S -0.14 -3.81 18.55 -107.50 -1.99 -5.81 16 15 C -0.52 -15.41 10.04 30.94 0.31 -15.10 16 16 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 17 C 0.09 2.84 5.50 -17.43 -0.10 2.74 16 18 N -0.88 -27.21 13.97 55.49 0.78 -26.43 16 19 Si 0.86 22.32 27.74 -169.99 -4.71 17.60 16 20 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 22 H -0.24 -6.11 6.74 56.52 0.38 -5.73 16 23 C -0.12 -0.74 2.79 -90.62 -0.25 -0.99 16 24 C -0.16 -1.02 8.52 37.15 0.32 -0.70 16 25 C -0.15 -0.95 8.95 37.16 0.33 -0.62 16 26 C -0.08 -0.60 12.08 29.35 0.35 -0.25 16 27 O -0.20 -1.92 10.77 5.38 0.06 -1.86 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.75 8.06 -51.93 -0.42 0.33 16 32 H 0.05 0.25 7.36 -51.93 -0.38 -0.13 16 33 H 0.34 2.74 6.55 -39.29 -0.26 2.48 16 34 H 0.07 0.83 6.81 -51.93 -0.35 0.47 16 35 H 0.07 0.85 6.06 -51.93 -0.31 0.53 16 36 H 0.41 5.16 8.14 -40.82 -0.33 4.83 16 37 H 0.10 1.91 8.14 -51.92 -0.42 1.49 16 38 H 0.10 1.85 8.14 -51.91 -0.42 1.43 16 39 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 40 H 0.07 0.37 7.35 -51.93 -0.38 -0.01 16 41 H 0.07 0.55 6.23 -51.93 -0.32 0.23 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.05 0.33 6.43 -51.93 -0.33 0.00 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.48 6.68 -51.93 -0.35 0.13 16 46 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.21 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 397.23 15.07 5.99 5.99 Total: -1.00 -36.86 397.23 -7.41 -44.27 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.23 Total: 3.28 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 0.64 Total: -3.09 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -0.25 Total: -48.58 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.15 Total: -13.67 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.60 kcal Atomic # 16 Polarization: -3.81 SS G_CDS: -1.99 Total: -5.81 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.86 -7.41 -44.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268208577.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.432 kcal (2) G-P(sol) polarization free energy of solvation -36.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds