Wall clock time and date at job start Sat Apr 11 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30260 * 125.61801 * 2 1 4 4 C 1.34485 * 108.69814 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.16042 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47591 * 275.02595 * 5 4 3 7 7 C 1.46900 * 111.00051 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47097 * 324.99803 * 7 6 5 9 9 C 1.53001 * 109.47043 * 204.99858 * 7 6 5 10 10 N 1.46498 * 109.46937 * 54.99929 * 9 7 6 11 11 C 1.34780 * 120.00195 * 179.97438 * 10 9 7 12 12 O 1.21292 * 119.99667 * 0.02562 * 11 10 9 13 13 C 1.50693 * 120.00503 * 179.97438 * 11 10 9 14 14 S 1.80998 * 109.47453 * 180.02562 * 13 11 10 15 15 C 1.76203 * 100.00081 * 180.02562 * 14 13 11 16 16 H 1.07997 * 119.99598 * 359.97438 * 15 14 13 17 17 C 1.38797 * 119.99995 * 180.02562 * 15 14 13 18 18 N 1.31629 * 120.00007 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00090 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46738 * 90.00312 * 19 17 15 21 21 H 1.48500 * 109.47508 * 210.00607 * 19 17 15 22 22 H 1.48502 * 109.47253 * 330.00877 * 19 17 15 23 23 C 1.53000 * 109.47204 * 85.00347 * 7 6 5 24 24 C 1.52995 * 109.47587 * 64.99586 * 23 7 6 25 25 C 1.53001 * 109.47243 * 184.99824 * 23 7 6 26 26 C 1.34330 * 107.66950 * 359.97438 * 4 3 2 27 27 O 1.33967 * 125.62312 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.46498 * 90.00168 * 1 2 3 29 29 H 1.09000 * 109.46598 * 209.99572 * 1 2 3 30 30 H 1.08993 * 109.47221 * 329.99839 * 1 2 3 31 31 H 1.09003 * 109.47426 * 35.03204 * 5 4 3 32 32 H 1.09006 * 109.47012 * 155.02282 * 5 4 3 33 33 H 1.00904 * 110.99803 * 303.95504 * 6 5 4 34 34 H 1.09000 * 109.47139 * 175.00231 * 9 7 6 35 35 H 1.09005 * 109.47403 * 295.00277 * 9 7 6 36 36 H 0.96996 * 120.00077 * 0.02562 * 10 9 7 37 37 H 1.09000 * 109.47397 * 300.00556 * 13 11 10 38 38 H 1.09005 * 109.46538 * 60.00230 * 13 11 10 39 39 H 0.97000 * 119.99817 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.47064 * 304.99770 * 23 7 6 41 41 H 1.08997 * 109.47160 * 59.99832 * 24 23 7 42 42 H 1.08998 * 109.47605 * 179.97438 * 24 23 7 43 43 H 1.09005 * 109.47185 * 300.00571 * 24 23 7 44 44 H 1.08998 * 109.47272 * 179.97438 * 25 23 7 45 45 H 1.08997 * 109.46710 * 299.99682 * 25 23 7 46 46 H 1.08999 * 109.47008 * 59.99825 * 25 23 7 47 47 H 1.08000 * 126.44082 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 0.0006 5 6 4.7570 1.5727 0.0002 6 7 5.0760 1.9630 -1.3796 7 6 6.2484 2.8473 -1.4189 8 1 6.2478 3.4906 -0.5390 9 6 6.1944 3.7099 -2.6814 10 7 4.9186 4.4286 -2.7275 11 6 4.6476 5.2552 -3.7570 12 8 5.4598 5.4036 -4.6456 13 6 3.3351 5.9941 -3.8048 14 16 3.2713 7.0147 -5.2983 15 6 1.6794 7.7443 -5.1025 16 1 1.0759 7.5003 -4.2407 17 6 1.2006 8.6317 -6.0563 18 7 0.0117 9.1772 -5.9097 19 14 2.2442 9.0531 -7.5472 20 1 1.9462 8.0990 -8.6455 21 1 1.9340 10.4349 -7.9941 22 1 3.6819 8.9602 -7.1874 23 6 7.5241 2.0028 -1.4325 24 6 7.5851 1.1918 -2.7284 25 6 8.7447 2.9213 -1.3477 26 6 3.5698 -0.6757 0.0015 27 8 2.2873 -1.0890 0.0005 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 4.5419 2.4642 0.5895 32 1 5.6070 1.0465 0.4348 33 1 5.2163 1.1509 -1.9617 34 1 7.0151 4.4270 -2.6669 35 1 6.2843 3.0725 -3.5611 36 1 4.2693 4.3103 -2.0168 37 1 2.5146 5.2768 -3.8200 38 1 3.2446 6.6311 -2.9249 39 1 -0.3227 9.7976 -6.5761 40 1 7.5198 1.3244 -0.5793 41 1 7.5893 1.8701 -3.5816 42 1 8.4941 0.5905 -2.7384 43 1 6.7154 0.5375 -2.7889 44 1 9.6536 2.3196 -1.3570 45 1 8.7489 3.5996 -2.2009 46 1 8.7013 3.4989 -0.4244 47 1 4.4470 -1.3058 0.0025 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268208577.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:46 Heat of formation + Delta-G solvation = -53.341301 kcal Electronic energy + Delta-G solvation = -27004.455527 eV Core-core repulsion = 23120.674081 eV Total energy + Delta-G solvation = -3883.781446 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -44.26384 -40.78450 -39.36875 -36.31454 -35.16543 -34.66743 -34.57420 -32.73641 -31.40922 -29.38612 -28.26851 -28.02947 -27.77952 -25.98884 -24.11913 -22.59504 -21.91487 -21.72854 -20.51237 -19.73437 -18.26224 -17.79141 -17.74136 -17.53777 -17.08699 -16.81340 -16.38047 -16.02228 -15.81569 -15.62493 -15.19040 -15.02319 -14.86771 -14.70896 -14.41130 -14.31085 -13.94948 -13.88519 -13.67380 -13.48525 -13.34057 -13.19005 -13.01108 -12.96629 -12.81469 -12.62622 -12.50307 -12.09291 -12.01572 -11.85752 -11.73567 -11.49004 -11.38307 -11.16714 -10.95850 -10.53800 -9.98343 -9.73950 -9.33977 -8.98836 -8.51113 -6.21910 0.50772 1.00016 1.31755 1.47607 1.57303 1.62340 1.64413 1.89354 2.25217 2.34376 2.73685 2.86839 3.05497 3.27526 3.72251 3.78166 3.91774 3.97196 4.02701 4.07433 4.22424 4.26915 4.36226 4.43299 4.48001 4.51740 4.62522 4.65454 4.69814 4.78710 4.82013 4.84678 4.92012 5.00572 5.01273 5.05831 5.11025 5.20646 5.36556 5.38314 5.41513 5.57236 5.71315 5.97992 6.11680 6.37966 6.57554 6.84055 6.93748 7.27247 8.61659 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009293 B = 0.002728 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.356880 B =10262.019633 C =12843.764508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.178 3.822 3 N -0.505 5.505 4 C -0.030 4.030 5 C 0.147 3.853 6 N -0.688 5.688 7 C 0.092 3.908 8 H 0.096 0.904 9 C 0.128 3.872 10 N -0.698 5.698 11 C 0.532 3.468 12 O -0.568 6.568 13 C -0.110 4.110 14 S -0.171 6.171 15 C -0.530 4.530 16 H 0.059 0.941 17 C 0.045 3.955 18 N -0.918 5.918 19 Si 0.916 3.084 20 H -0.262 1.262 21 H -0.257 1.257 22 H -0.236 1.236 23 C -0.110 4.110 24 C -0.156 4.156 25 C -0.150 4.150 26 C -0.068 4.068 27 O -0.213 6.213 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.347 0.653 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.414 0.586 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.277 0.723 40 H 0.092 0.908 41 H 0.048 0.952 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.047 0.953 46 H 0.062 0.938 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.010 -25.323 17.796 33.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.029 4.029 3 N -0.236 5.236 4 C -0.149 4.149 5 C 0.018 3.982 6 N -0.321 5.321 7 C -0.018 4.018 8 H 0.114 0.886 9 C 0.004 3.996 10 N -0.350 5.350 11 C 0.317 3.683 12 O -0.447 6.447 13 C -0.261 4.261 14 S 0.055 5.945 15 C -0.678 4.678 16 H 0.077 0.923 17 C -0.160 4.160 18 N -0.556 5.556 19 Si 0.738 3.262 20 H -0.186 1.186 21 H -0.181 1.181 22 H -0.160 1.160 23 C -0.131 4.131 24 C -0.213 4.213 25 C -0.208 4.208 26 C -0.139 4.139 27 O -0.100 6.100 28 H 0.118 0.882 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.168 0.832 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.251 0.749 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 13.493 -23.887 16.293 31.908 hybrid contribution -0.516 -0.921 0.724 1.280 sum 12.977 -24.808 17.017 32.763 Atomic orbital electron populations 1.20446 0.79313 1.06202 1.05613 1.27066 0.97836 0.78331 0.99665 1.70381 1.02937 1.31283 1.19020 1.21954 0.93171 0.93290 1.06506 1.20161 0.90768 0.97018 0.90239 1.60412 1.38648 1.22964 1.10049 1.21784 0.88665 0.94123 0.97222 0.88621 1.21581 0.84770 0.94319 0.98913 1.45614 1.20795 1.44194 1.24429 1.19892 0.87135 0.79321 0.81937 1.90668 1.49655 1.65411 1.38971 1.23245 0.98967 1.01732 1.02156 1.84603 1.23342 1.55502 1.31022 1.22475 1.01891 1.31226 1.12211 0.92255 1.25584 0.95772 0.94153 1.00489 1.70022 1.18462 1.30040 1.37068 0.85846 0.81425 0.79148 0.79810 1.18644 1.18145 1.16030 1.21660 0.94515 0.97560 0.99354 1.21963 1.02328 0.99953 0.97044 1.21873 0.97409 0.99498 1.02046 1.25450 0.85446 0.96165 1.06828 1.84454 1.17591 1.38055 1.69933 0.88208 0.87300 0.87856 0.90007 0.90441 0.83187 0.91581 0.92189 0.74876 0.87700 0.87273 0.91327 0.88942 0.93321 0.91378 0.92273 0.91686 0.93347 0.91893 0.73533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.65 10.51 71.24 0.75 0.09 16 2 C 0.18 3.35 8.34 88.34 0.74 4.09 16 3 N -0.51 -11.58 11.30 -291.98 -3.30 -14.87 16 4 C -0.03 -0.51 6.62 41.26 0.27 -0.24 16 5 C 0.15 1.85 6.02 85.56 0.52 2.36 16 6 N -0.69 -9.88 5.68 -495.58 -2.82 -12.69 16 7 C 0.09 1.24 1.97 44.92 0.09 1.33 16 8 H 0.10 1.19 7.80 -2.39 -0.02 1.17 16 9 C 0.13 2.78 4.67 86.38 0.40 3.18 16 10 N -0.70 -18.88 5.39 -463.05 -2.49 -21.37 16 11 C 0.53 19.91 7.85 87.65 0.69 20.60 16 12 O -0.57 -25.50 15.86 -3.07 -0.05 -25.55 16 13 C -0.11 -4.54 6.16 71.23 0.44 -4.10 16 14 S -0.17 -9.06 18.55 -56.49 -1.05 -10.10 16 15 C -0.53 -32.07 10.04 67.95 0.68 -31.39 16 16 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 17 C 0.05 2.73 5.50 84.86 0.47 3.20 16 18 N -0.92 -57.21 13.97 21.65 0.30 -56.91 16 19 Si 0.92 46.12 27.74 68.60 1.90 48.02 16 20 H -0.26 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 22 H -0.24 -11.88 6.74 99.48 0.67 -11.21 16 23 C -0.11 -1.05 2.79 -10.80 -0.03 -1.08 16 24 C -0.16 -1.71 8.52 71.98 0.61 -1.09 16 25 C -0.15 -1.58 8.95 71.98 0.64 -0.94 16 26 C -0.07 -0.90 12.08 66.93 0.81 -0.09 16 27 O -0.21 -3.70 10.77 -3.68 -0.04 -3.74 16 28 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.20 8.06 -2.39 -0.02 1.18 16 32 H 0.08 0.51 7.36 -2.38 -0.02 0.49 16 33 H 0.35 4.73 6.55 -89.69 -0.59 4.14 16 34 H 0.07 1.52 6.81 -2.39 -0.02 1.51 16 35 H 0.06 1.45 6.06 -2.38 -0.01 1.44 16 36 H 0.41 9.95 8.14 -92.71 -0.75 9.19 16 37 H 0.10 4.14 8.14 -2.40 -0.02 4.12 16 38 H 0.11 4.19 8.14 -2.39 -0.02 4.17 16 39 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 40 H 0.09 0.57 7.35 -2.39 -0.02 0.56 16 41 H 0.05 0.74 6.23 -2.39 -0.01 0.72 16 42 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.06 0.59 6.43 -2.38 -0.02 0.58 16 44 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.05 0.67 6.68 -2.39 -0.02 0.65 16 46 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.25 0.95 8.06 -2.91 -0.02 0.92 16 Total: -1.00 -80.91 397.23 -0.84 -81.76 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -0.38 Total: 19.55 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 7.08 Total: -4.08 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -8.31 Total: -105.85 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.09 Total: -29.29 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.90 Total: 48.02 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.05 Total: -10.10 kcal Total: -80.91 -0.84 -81.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268208577.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.415 kcal (2) G-P(sol) polarization free energy of solvation -80.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds