Wall clock time and date at job start Sat Apr 11 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30251 * 125.62491 * 2 1 4 4 C 1.34477 * 108.70505 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.16546 * 179.97438 * 4 3 2 6 6 N 1.46902 * 109.47385 * 275.02472 * 5 4 3 7 7 C 1.46894 * 110.99995 * 175.61774 * 6 5 4 8 8 H 1.09000 * 109.47230 * 37.01320 * 7 6 5 9 9 C 1.52994 * 109.47148 * 157.01582 * 7 6 5 10 10 N 1.46501 * 109.47244 * 305.00133 * 9 7 6 11 11 C 1.34778 * 119.99693 * 180.02562 * 10 9 7 12 12 O 1.21269 * 120.00270 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99500 * 180.02562 * 11 10 9 14 14 S 1.80998 * 109.47010 * 179.97438 * 13 11 10 15 15 C 1.76198 * 100.00307 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99742 * 359.97438 * 15 14 13 17 17 C 1.38792 * 120.00217 * 179.97438 * 15 14 13 18 18 N 1.31625 * 120.00357 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99896 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47060 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47123 * 119.99871 * 19 17 15 22 22 H 1.48501 * 109.46507 * 239.99874 * 19 17 15 23 23 C 1.53005 * 109.47210 * 277.01966 * 7 6 5 24 24 C 1.53001 * 109.47177 * 174.24980 * 23 7 6 25 25 C 1.53003 * 109.46573 * 294.24698 * 23 7 6 26 26 C 1.34330 * 107.66790 * 0.26566 * 4 3 2 27 27 O 1.33971 * 125.61570 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47126 * 89.99591 * 1 2 3 29 29 H 1.08997 * 109.47645 * 210.00304 * 1 2 3 30 30 H 1.08999 * 109.46672 * 329.99993 * 1 2 3 31 31 H 1.09006 * 109.46581 * 155.02914 * 5 4 3 32 32 H 1.08999 * 109.46800 * 35.03023 * 5 4 3 33 33 H 1.00897 * 110.99328 * 51.66384 * 6 5 4 34 34 H 1.09004 * 109.46907 * 184.99876 * 9 7 6 35 35 H 1.08997 * 109.46963 * 65.00212 * 9 7 6 36 36 H 0.96991 * 119.99855 * 359.97438 * 10 9 7 37 37 H 1.09001 * 109.46975 * 299.99144 * 13 11 10 38 38 H 1.08994 * 109.47149 * 59.99501 * 13 11 10 39 39 H 0.97001 * 120.00396 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.47051 * 54.24583 * 23 7 6 41 41 H 1.09002 * 109.46891 * 65.53056 * 24 23 7 42 42 H 1.09000 * 109.46518 * 185.52848 * 24 23 7 43 43 H 1.08991 * 109.46807 * 305.53105 * 24 23 7 44 44 H 1.09007 * 109.46979 * 60.00571 * 25 23 7 45 45 H 1.09003 * 109.46781 * 179.97438 * 25 23 7 46 46 H 1.08992 * 109.47608 * 300.00127 * 25 23 7 47 47 H 1.07998 * 126.44508 * 179.73732 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0587 0.0000 4 6 3.5522 0.6674 0.0006 5 6 4.7572 1.5725 0.0002 6 7 5.0762 1.9627 -1.3796 7 6 6.1824 2.9287 -1.4112 8 1 6.9079 2.6757 -0.6380 9 6 6.8607 2.8827 -2.7817 10 7 7.2763 1.5089 -3.0751 11 6 7.8997 1.2269 -4.2363 12 8 8.1162 2.1102 -5.0384 13 6 8.3267 -0.1865 -4.5383 14 16 9.1293 -0.2409 -6.1597 15 6 9.5152 -1.9576 -6.2528 16 1 9.2487 -2.6158 -5.4390 17 6 10.1614 -2.4639 -7.3718 18 7 10.4857 -1.6619 -8.3638 19 14 10.5698 -4.2841 -7.4708 20 1 10.1026 -4.9641 -6.2361 21 1 9.8932 -4.8798 -8.6508 22 1 12.0390 -4.4551 -7.6038 23 6 5.6379 4.3361 -1.1584 24 6 6.8031 5.3216 -1.0486 25 6 4.7297 4.7474 -2.3190 26 6 3.5698 -0.6758 -0.0050 27 8 2.2872 -1.0891 0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 5.6071 1.0461 0.4347 32 1 4.5420 2.4639 0.5895 33 1 4.2619 2.3299 -1.8489 34 1 7.7351 3.5336 -2.7764 35 1 6.1604 3.2213 -3.5452 36 1 7.1035 0.8024 -2.4334 37 1 9.0266 -0.5256 -3.7746 38 1 7.4521 -0.8369 -4.5442 39 1 10.9377 -2.0157 -9.1458 40 1 5.0670 4.3435 -0.2300 41 1 7.3150 5.3874 -2.0087 42 1 6.4224 6.3047 -0.7717 43 1 7.5017 4.9747 -0.2874 44 1 3.8995 4.0453 -2.3972 45 1 4.3414 5.7499 -2.1388 46 1 5.3005 4.7400 -3.2475 47 1 4.4468 -1.3060 -0.0101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268208581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:50 Heat of formation + Delta-G solvation = -26.212123 kcal Electronic energy + Delta-G solvation = -26897.492236 eV Core-core repulsion = 23014.887200 eV Total energy + Delta-G solvation = -3882.605036 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.63127 -39.56301 -38.25929 -35.64152 -33.93125 -33.85471 -32.38722 -32.18200 -29.90706 -28.61614 -27.56354 -27.20296 -25.49475 -25.09202 -23.34770 -21.90112 -21.41307 -20.25892 -19.60212 -17.77928 -17.47415 -17.08298 -16.62898 -16.14068 -15.81300 -15.44036 -15.14005 -14.77411 -14.71489 -14.54421 -14.46300 -13.97769 -13.64519 -13.53177 -13.41765 -13.28754 -13.05820 -12.91320 -12.72993 -12.49251 -12.33945 -12.19946 -11.96384 -11.59500 -11.43081 -11.35157 -11.10930 -11.04066 -10.97190 -10.88217 -10.76132 -10.70323 -9.75640 -9.27841 -9.11737 -9.03629 -8.72175 -8.62275 -8.16359 -6.43988 -6.17597 -3.87122 1.15223 2.25974 2.45761 3.13720 3.23698 3.25923 3.31492 3.37931 3.57777 3.81451 4.01737 4.24686 4.38749 4.45497 4.52752 4.60803 4.69885 4.83366 4.93930 5.01319 5.09973 5.11863 5.14741 5.17505 5.27363 5.30773 5.37743 5.40641 5.54257 5.58922 5.61249 5.61631 5.68046 5.73645 5.79950 5.94262 5.95121 5.98072 6.01436 6.08205 6.23521 6.60810 6.81956 7.04318 7.42032 7.63973 7.95063 8.39711 8.79067 9.27820 10.89899 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009494 B = 0.002516 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.490446 B =11126.627287 C =13504.270206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.187 3.813 3 N -0.481 5.481 4 C -0.017 4.017 5 C 0.141 3.859 6 N -0.678 5.678 7 C 0.080 3.920 8 H 0.087 0.913 9 C 0.131 3.869 10 N -0.724 5.724 11 C 0.530 3.470 12 O -0.525 6.525 13 C -0.151 4.151 14 S -0.062 6.062 15 C -0.533 4.533 16 H 0.072 0.928 17 C 0.072 3.928 18 N -0.868 5.868 19 Si 0.918 3.082 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.121 4.121 24 C -0.148 4.148 25 C -0.155 4.155 26 C -0.051 4.051 27 O -0.203 6.203 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.350 0.650 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.402 0.598 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.267 0.733 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.768 7.725 22.740 29.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.020 4.020 3 N -0.211 5.211 4 C -0.137 4.137 5 C 0.012 3.988 6 N -0.310 5.310 7 C -0.031 4.031 8 H 0.105 0.895 9 C 0.006 3.994 10 N -0.379 5.379 11 C 0.315 3.685 12 O -0.400 6.400 13 C -0.302 4.302 14 S 0.164 5.836 15 C -0.681 4.681 16 H 0.091 0.909 17 C -0.137 4.137 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.142 4.142 24 C -0.206 4.206 25 C -0.212 4.212 26 C -0.123 4.123 27 O -0.089 6.089 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.171 0.829 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.236 0.764 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -17.183 9.242 21.114 28.748 hybrid contribution -0.188 -2.450 1.483 2.870 sum -17.371 6.792 22.597 29.300 Atomic orbital electron populations 1.20249 0.81423 1.04997 1.04798 1.26277 0.96534 0.78689 1.00491 1.70309 1.01702 1.30421 1.18705 1.21569 0.92750 0.92886 1.06468 1.20172 0.91827 0.96114 0.90710 1.60690 1.11564 1.44020 1.14770 1.21924 0.93325 0.89744 0.98081 0.89519 1.21356 0.98547 0.84382 0.95112 1.45785 1.61202 1.10144 1.20729 1.20261 0.76817 0.90579 0.80802 1.90684 1.54254 1.48283 1.46789 1.23504 1.04341 0.95459 1.06869 1.85381 1.73442 1.11958 1.12796 1.22912 1.44502 0.93638 1.07058 0.90949 1.24991 0.95053 0.98900 0.94724 1.70030 1.38388 1.35060 1.06871 0.86126 0.78158 0.83074 0.78186 1.19638 1.20607 1.20610 1.21717 0.97561 0.95535 0.99374 1.21857 0.97640 0.98641 1.02490 1.21964 0.99390 1.01267 0.98620 1.24857 0.84810 0.96196 1.06417 1.84464 1.17083 1.37735 1.69662 0.88849 0.89379 0.88232 0.89225 0.93235 0.82900 0.91268 0.91352 0.76373 0.89461 0.89367 0.92300 0.91000 0.91816 0.92616 0.92529 0.92682 0.92418 0.91406 0.76634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 36.01 0.38 0.11 16 2 C 0.19 1.69 8.34 -12.95 -0.11 1.58 16 3 N -0.48 -5.07 11.29 -7.36 -0.08 -5.15 16 4 C -0.02 -0.16 6.57 -82.81 -0.54 -0.71 16 5 C 0.14 1.09 6.03 -4.97 -0.03 1.06 16 6 N -0.68 -5.87 5.70 -107.99 -0.62 -6.49 16 7 C 0.08 0.66 1.95 -67.72 -0.13 0.53 16 8 H 0.09 0.66 7.88 -51.93 -0.41 0.25 16 9 C 0.13 1.55 4.67 -4.04 -0.02 1.53 16 10 N -0.72 -10.11 5.39 -60.30 -0.32 -10.43 16 11 C 0.53 10.23 7.85 -10.98 -0.09 10.14 16 12 O -0.52 -12.26 15.86 5.57 0.09 -12.17 16 13 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 14 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 15 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 16 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 17 C 0.07 2.09 5.49 -17.44 -0.10 1.99 16 18 N -0.87 -26.50 13.22 55.49 0.73 -25.76 16 19 Si 0.92 21.65 29.55 -169.99 -5.02 16.62 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.12 -0.91 2.78 -90.62 -0.25 -1.16 16 24 C -0.15 -1.08 8.83 37.16 0.33 -0.75 16 25 C -0.16 -1.26 8.50 37.16 0.32 -0.95 16 26 C -0.05 -0.45 12.08 29.35 0.35 -0.09 16 27 O -0.20 -1.97 10.78 5.34 0.06 -1.92 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.39 7.14 -51.93 -0.37 0.02 16 33 H 0.35 3.41 6.57 -39.29 -0.26 3.15 16 34 H 0.07 0.86 6.96 -51.93 -0.36 0.50 16 35 H 0.07 0.90 6.05 -51.93 -0.31 0.59 16 36 H 0.40 4.72 8.14 -40.82 -0.33 4.39 16 37 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 38 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.07 0.53 7.15 -51.93 -0.37 0.15 16 41 H 0.06 0.52 6.98 -51.93 -0.36 0.16 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.05 0.46 6.47 -51.93 -0.34 0.12 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.63 6.23 -51.93 -0.32 0.30 16 47 H 0.22 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 399.98 15.07 6.03 6.03 Total: -1.00 -36.46 399.98 -7.94 -44.40 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.21 Total: 3.55 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 0.63 Total: -4.73 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.29 Total: -47.83 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.15 Total: -14.09 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.46 -7.94 -44.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268208581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.183 kcal (2) G-P(sol) polarization free energy of solvation -36.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds